These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7796#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 653 fasta sequence [CCGCTTCCTCCGCGAACGGTTCGATAGTCCTTGACGGTGTTACACCATGGTTTCTGCTCCGACCTGTGTTCGCAAACGTACGCTGGACTTTAGCTGCAAGTATCGCAACTTAGACAAATTTTCCACCGATGTGGAACATTTCCTGGAAACGTACGATCAAATAGTGCAACACTCGCTGGCATACCACCGAAGCTTTCGGCGCCATCTGAAGCAACTGTACGAATGCGTGGTGGAGTTGTTACAAAAATTCCAGTACATTCAATCCAGCGGTACCAAAGGGCAGCTGTACATGGAGAAGTATTGCTGTGGCGTTTTGTTTGATGACTGCGAGGAACTTAAAAGGCACTACTTTGAGTTTCATAACTTTGCCCGACTCATTCATCCCAGCATAGTGGAGCTCCGGTCAGGGCATGGTAAGCTGCAGTTCTTCCATCGCCGTGTGCAGGAGTACACATTCTACGGTACCGAATTTACTGCCGTTTTGCTGATGAACTTGAAAAAGATAGCCAACAACTTGTACACCACGTTGGAGCGTGGCCCAAAGTGGTAGAATGGGATTTGCTTTTGTTCCTGCTCGTGGGTAAAACAACGGCAAAGAACTAGGGTGTCGTTCTTATTTTTAGTGCATAGAATAAATAAACTCGTGACGTTAC] [+] EMBL BM588233 [CCGCTTCCTAATCGAACGGTTCGATAGTCCTTGACGGTGTTACACCATGGTTTCTGCTCCGACCTGTGTTCGCAAACGTACGCTGGACTTTAGCTGCAAGTATCGCAACTTAGACAAATTTTCCACCGATGTGGAACATTTCCTGGAAACGTACGATCAAATAGTGCAACACTCGCTGGCATACCACCGAAGCTTTCGGCGCCATCTGAAGCAACTGTACGAATGCGTGGTGGAGTTGTTACAAAAATTCCAGTACATTCAATCCAGCGGTACCAAAGGGCAGCTGTACATGGAGAAGTATTGCTGTGGCGTTTTGTTTGATGACTGCGAGGAACTTAAAAGGCACTACTTTGAGTTTCATAACTTTGCCCGACTCATTCATCCCAGCATAGTGGAGCTCCGGTCAGGGCATGGTAAGCTGCAGTTCTTCCATCGCCGTGTGCAGGAGTACACATTCTACGGTACCGAATTTACTGCCGTTTTGCTGATGAACTTGAAAAAGATAGCCAACAACTTGTACACCACGTTGGAGCGTGGCCCAAAGTGGTAGAATGGGATTTGCTTTTGTTCCTGCTCGTGGGTAAAACAACGGCAAAGAACTAGGGTGTCGTTCTT ] [+] EMBL BM627680 [ CCGCGAACGGTTCGATAGTCCTTGACGGTGTTACACCATGGTTTCTGCTCCGACCTGTGTTCGCAAACGTACGCTGGACTTTAGCTGCAAGTATCGCAACTTAGACAAATTTTCCACCGATGTGGAACATTTCCTGGAAACGTACGATCAAATAGTGCAACACTCGCTGGCATACCACCGAAGCTTTCGGCGCCATCTGAAGCAACTGTACGAATGCGTGGTGGAGTTGTTACAAAAATTCCAGTACATTCAATCCAGCGGTACCAAAGGGCAGCTGTACATGGAGAAGTATTGCTGTGGTGTTTTGTTTGATGACTGCGAGGAACTTAAAAGGCACTACTTTGAGTTTCATAACTTTGCCCGACTCATTCATCCCAGCATAGTCGAGCTCCGGTCAGGGCATGGTAAGCTGCAGTTCTTCCATCGCCGTGTGCAGGAGTACACATTCTACGGTACCGAATTTACTGCCGTTTTGCTGATGAACTTGAAAAAGATAGCCAACAACTTGTACACCACGTTGGAGCGTGGCCCAAAGTGGTAGAATGGGATTTGATTTTGTTCCTGCTCGTGGGTAAAACAACGGCAAAGAACTAGGGTGTCGTTC ] [+] EMBL BM580796 [ CCGCGAACGGTTCGATAGTCCTTGACGGTGTTACACCATGGTTTCTGCTCCGACCTGTGTTCGCAAACGTACGCTGGACTTTAGCTGCAAGTATCGCAACTTAGACAAATTTTCCACCGATGTGGAACATTTCCTGGAAACGTACGATCAAATAGTGCAACACTCGCTGGCATACCACCGAAGCTTTCGGCGCCATCTGAAGCAACTGTACGAATGCGTGGTGGAGTTGTTACAAAAATTCCAGTACATTCAATCCAGCGGTACCAAAGGGCAGCTGTACATGGAGAAGTATTGCTGTGGCGTTTTGTTTGATGACTGCGAGGAACTTAAAAGGCACTACTTTGAGTTTCATAACTTTGCCCGACTCATTCATCCCAGCATAGTGGAGCTCCGGTCAGGGCATGGTAAGCTGCAGTTCTTCCATCGCCGTGTGCAGGAGTACACATTCTACGGTACCGAATTTACTGCCGTTTTGCTGATGAACTTGAAAAAGATAGCCAACAACTTGTACACCACGTTGGga ] [+] EMBL BX626969 [ GATAGTCCTTGACGGTGTTACACCATGGTTTCTGCTCCGACCTGTGTTCGCAAACGTACGCTGGACTTTAGCTGCAAGTATCGCAACTTAGACAAATTTTCCACCGATGTGGAACATTTCCTGGAAACGTACGATCAAATAGTGCAACACTCGCTGGCATACCACCGAAGCTTTCGGCGCCATCTGAAGCAACTGTACGAATGCGTGGTGGAGTTGTTACAAAAATTCCAGTACATTCAATCCAGCGGTACCAAAGGGCAGCTGTACATGGAGAAGTATTGCTGTGGCGTTTTGTTTGATGACTGCGAGGAACTTAAAAGGCACTACTTTGAGTTTCATAACTTTGCCCGACTCATTCATCCCAGCATAGTGGAGCTCCGGTCAGGGCATGGTAAGCTGCAGTTCTTCCATCGCCGTGTGCAGGAGTACACATTCTACGGTACCGAATTTACTGCCGTTTTGCTGATGAACTTGAAAAAGATAGCCAACAACTTGTACACCACGTTGGAGCGTGGCCCAAAGTGGTAGAATGGGATTTGCTTTTGTTCCTGCTCGTGGGTAAAACAACGGCAAAGAACTAGGGTGTCGTTCTTATTTTTAGTGCATAGAATAAATA ] [+] EMBL BX625592 [ GACCTGTGTTCGC AACGTACGCTGGACTTTAGCTGCAAGTATCGCAACTTAGACAAATTTTCCACCGATGTGGAACATTTCCTGGAAACGTACGATCAAATAGTGCAACACTCGCTGGCATACCACCGAAGCTTTCGGCGCCATCTGAAGCAACTGTACGAATGCGTGGTGGAGTTGTTACAAAAATTCCAGTACATTCAATCCAGCGGTACCAAAGGGCAGCTGTACATGGAGAAGTATTGCTGTGGCGTTTTGTTTGATGACTGCGAGGAACTTAAAAGGCACTACTTTGAGTTTCATAACTTTGCCCGACTCATTCATCCCAGCATAGTGGAGCTCCGGTCAGGGCATGGTAAGCTGCAGTTCTTCCATCGCCGTGTGCAGGAGTACACATTCTACGGTACCGAATTTACTGCCGTTTTGCTGATGAACTTGAAAAAGATAGCCAACAACTTGTACACCACGTTGGAGCGTGGCCCAAAGTGGTAGAATGGGATTTGCTTTTGTTCCTGCTCGTGGGTAAAACAACGGCAAAGAACTANGGTGTCGTTCTTATTTTTAGTGCATAGAATAAATAAACTCGTGA ] [+] EMBL BM591797 [ ccgGGCGTTTTGTTTGATGACTGCGAGGAACTTAAAAGGCACTACTTTGAGTTTCATAACTATGCCCGACTCATTCATCCCAGCATAGTGGAGCTCCGGTCAGGGCATGGTAAGCTGCAGTTCTTCCATCGCCGTGTGCAGGAGTACACATTCTACGGTACCGAATTTACTGCCGTTTTGCTGATGAACTTGAAAAAGATAGCCAACAACTTGTGCGCCACGTTGGAGCGTGGCCCAAAGTGGTAGAATGGGATTTGCTTTTGTTCCTGCTCGTGGGTAAAACAACGGCAAAGAACTAGGGTGTCGTTCTTATTTTTAGTGCATAGAATAAATAAACTCGTGACGTTAC] consensusID : consensus_7796#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence [GTGCAACACTCGCTGGCATACCACCGAAGCTTTCGGCGCCATCTGAAGCAACTGTACGAATGCGTGGTGGAGTTGTTACAAAAATTCCAGTACATTCAATCCAGCGGTACCAAAGGGCAGCTGTACATGGAGAAGTATTGCTGTGGTGTTTGTTTGATGACTGCGAGGAACTTAAAAGGCACTACTTTGAGTTTCATAACTTTGCCCGACTCATTCATCCCAGCATAGTCGAGCATTTTAAATTGTATCCTAATTTGTCCTGCAGCTCCGGTCAGGGCATGGTAAGCTGCAGTTCTTCCATCGCCGTGTGCAGGAGTACACATTCTACGGTACCGAATTTACTGCCGTTTTGCTGATGAACTTGAAAAAGATAGCCAACAACTTGTACACCACGTTGGAGCGTGGCCCAAAGTGGTAGAATGGGATTTGATTTTGTTCCTGCTCGTGGGTAAAACAACGGCAAAGAACTAGGGTGTCGTTCTTATTTTTAGTGCATAGAATAAATAAACTCGTGACGTTACAAAAAAAAANAAAAAAAAAC] [+] EMBL AL931990 [GTGCAACACTCGCTGGCATACCACCGAAGCTTTCGGCGCCATCTGAAGCAACTGTACGAATGCGTGGTGGAGTTGTTACAAAAATTCCAGTACATTCAATCCAGCGGTACCAAAGGGCAGCTGTACATGGAGAAGTATTGCTGTGGTGTTTGTTTGATGACTGCGAGGAACTTAAAAGGCACTACTTTGAGTTTCATAACTTTGCCCGACTCATTCATCCCAGCATAGTCGAGCATTTTAAATTGTATCCTAATTTGTCCTGCAGCTCCGGTCAGGGCATGGTAAGCTGCAGTTCTTCCATCGCCGTGTGCAGGAGTACACATTCTACGGTACCGAATTTACTGCCGTTTTGCTGATGAACTTGAAAAAGATAGCCAACAACTTGTACACCACGTTGGAGCGTGGCCCAAAGTGGTAGAATGGGATTTGATTTTGTTCCTGCTCGTGGGTAAAACAACGGCAAAGAACTAGGGTGTCGTTCTTATTTTTAGTGCATAGAATAAATAAACTCGTGACGTTACAAAAAAAAANAAAAAAAAAC] consensusID : consensus_7796#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 382 fasta sequence [CCGCGGACGCGTGGGTGTACATGGAGAAGTATTGCTGTGGTGTTTTGTTTGATGACTGCGAGGAACTTAAAAGGCACTACTTTGAGTTTCATAACTTTGCCCGACTCATTCATCCCAGCATAGTCGAGCTCCGGTCAGGGCATGGTAAGCTGCAGTTCTTCCATCGCCGTGTGCAGGAGTACACATTCTACGGTACCGAATTTACTGCCGTTTTGCTGATGAACTTGAAAAAGATAGCCAACAACTTGTACACCACGTTGGAGCGTGGCCCAAAGTGGTAGAATGGGATTTGATTTTGTTCCTGCTCGTGGGTAAAACAACGGCAAAGAACTAGGGTGTCGTTCTTATTTTTAGTGCATAGAATAAATAAACTCGTGACGTT] [+] EMBL BM648229 [CCGCGGACGCGTGGGTGTACATGGAGAAGTATTGCTGTGGTGTTTTGTTTGATGACTGCGAGGAACTTAAAAGGCACTACTTTGAGTTTCATAACTTTGCCCGACTCATTCATCCCAGCATAGTCGAGCTCCGGTCAGGGCATGGTAAGCTGCAGTTCTTCCATCGCCGTGTGCAGGAGTACACATTCTACGGTACCGAATTTACTGCCGTTTTGCTGATGAACTTGAAAAAGATAGCCAACAACTTGTACACCACGTTGGAGCGTGGCCCAAAGTGGTAGAATGGGATTTGATTTTGTTCCTGCTCGTGGGTAAAACAACGGCAAAGAACTAGGGTGTCGTTCTTATTTTTAGTGCATAGAATAAATAAACTCGTGACGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7796#1 ------------------------------------------------------------ consensus_7796#2 ------------------------------------------------------------ consensus_7796#0 CCGCTTCCTCCGCGAACGGTTCGATAGTCCTTGACGGTGTTACACCATGGTTTCTGCTCC 60 consensus_7796#1 ------------------------------------------------------------ consensus_7796#2 ------------------------------------------------------------ consensus_7796#0 GACCTGTGTTCGCAAACGTACGCTGGACTTTAGCTGCAAGTATCGCAACTTAGACAAATT 120 consensus_7796#1 -------------------------------------------GTGCAACACTCGCTGGC 17 consensus_7796#2 ------------------------------------------------------------ consensus_7796#0 TTCCACCGATGTGGAACATTTCCTGGAAACGTACGATCAAATAGTGCAACACTCGCTGGC 180 consensus_7796#1 ATACCACCGAAGCTTTCGGCGCCATCTGAAGCAACTGTACGAATGCGTGGTGGAGTTGTT 77 consensus_7796#2 ------------------------------------------------------------ consensus_7796#0 ATACCACCGAAGCTTTCGGCGCCATCTGAAGCAACTGTACGAATGCGTGGTGGAGTTGTT 240 consensus_7796#1 ACAAAAATTCCAGTACATTCAATCCAGCGGTACCAAAGGGCAGCTGTACATGGAGAAGTA 137 consensus_7796#2 -----------------------------CCGCGGACGCGTGGGTGTACATGGAGAAGTA 31 consensus_7796#0 ACAAAAATTCCAGTACATTCAATCCAGCGGTACCAAAGGGCAGCTGTACATGGAGAAGTA 300 * * * * * **************** consensus_7796#1 TTGCTGTGGTGTTT-GTTTGATGACTGCGAGGAACTTAAAAGGCACTACTTTGAGTTTCA 196 consensus_7796#2 TTGCTGTGGTGTTTTGTTTGATGACTGCGAGGAACTTAAAAGGCACTACTTTGAGTTTCA 91 consensus_7796#0 TTGCTGTGGCGTTTTGTTTGATGACTGCGAGGAACTTAAAAGGCACTACTTTGAGTTTCA 360 ********* **** ********************************************* consensus_7796#1 TAACTTTGCCCGACTCATTCATCCCAGCATAGTCGAGCATTTTAAATTGTATCCTAATTT 256 consensus_7796#2 TAACTTTGCCCGACTCATTCATCCCAGCATAGTCGAGC---------------------- 129 consensus_7796#0 TAACTTTGCCCGACTCATTCATCCCAGCATAGTGGAGC---------------------- 398 ********************************* **** consensus_7796#1 GTCCTGCAGCTCCGGTCAGGGCATGGTAAGCTGCAGTTCTTCCATCGCCGTGTGCAGGAG 316 consensus_7796#2 ----------TCCGGTCAGGGCATGGTAAGCTGCAGTTCTTCCATCGCCGTGTGCAGGAG 179 consensus_7796#0 ----------TCCGGTCAGGGCATGGTAAGCTGCAGTTCTTCCATCGCCGTGTGCAGGAG 448 ************************************************** consensus_7796#1 TACACATTCTACGGTACCGAATTTACTGCCGTTTTGCTGATGAACTTGAAAAAGATAGCC 376 consensus_7796#2 TACACATTCTACGGTACCGAATTTACTGCCGTTTTGCTGATGAACTTGAAAAAGATAGCC 239 consensus_7796#0 TACACATTCTACGGTACCGAATTTACTGCCGTTTTGCTGATGAACTTGAAAAAGATAGCC 508 ************************************************************ consensus_7796#1 AACAACTTGTACACCACGTTGGAGCGTGGCCCAAAGTGGTAGAATGGGATTTGATTTTGT 436 consensus_7796#2 AACAACTTGTACACCACGTTGGAGCGTGGCCCAAAGTGGTAGAATGGGATTTGATTTTGT 299 consensus_7796#0 AACAACTTGTACACCACGTTGGAGCGTGGCCCAAAGTGGTAGAATGGGATTTGCTTTTGT 568 ***************************************************** ****** consensus_7796#1 TCCTGCTCGTGGGTAAAACAACGGCAAAGAACTAGGGTGTCGTTCTTATTTTTAGTGCAT 496 consensus_7796#2 TCCTGCTCGTGGGTAAAACAACGGCAAAGAACTAGGGTGTCGTTCTTATTTTTAGTGCAT 359 consensus_7796#0 TCCTGCTCGTGGGTAAAACAACGGCAAAGAACTAGGGTGTCGTTCTTATTTTTAGTGCAT 628 ************************************************************ consensus_7796#1 AGAATAAATAAACTCGTGACGTTACAAAAAAAAANAAAAAAAAAC 541 consensus_7796#2 AGAATAAATAAACTCGTGACGTT---------------------- 382 consensus_7796#0 AGAATAAATAAACTCGTGACGTTAC-------------------- 653 *********************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||