cluster # 7796

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Anopheles gambiae
cluster # 7796 cluster # 7796 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7796#0 length = 653 sequences # 6

consensus_7796#1 length = 541 sequences # 1
consensus_7796#2 length = 382 sequences # 1

consensusID : consensus_7796#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 653
fasta sequence

                              [CCGCTTCCTCCGCGAACGGTTCGATAGTCCTTGACGGTGTTACACCATGGTTTCTGCTCCGACCTGTGTTCGCAAACGTACGCTGGACTTTAGCTGCAAGTATCGCAACTTAGACAAATTTTCCACCGATGTGGAACATTTCCTGGAAACGTACGATCAAATAGTGCAACACTCGCTGGCATACCACCGAAGCTTTCGGCGCCATCTGAAGCAACTGTACGAATGCGTGGTGGAGTTGTTACAAAAATTCCAGTACATTCAATCCAGCGGTACCAAAGGGCAGCTGTACATGGAGAAGTATTGCTGTGGCGTTTTGTTTGATGACTGCGAGGAACTTAAAAGGCACTACTTTGAGTTTCATAACTTTGCCCGACTCATTCATCCCAGCATAGTGGAGCTCCGGTCAGGGCATGGTAAGCTGCAGTTCTTCCATCGCCGTGTGCAGGAGTACACATTCTACGGTACCGAATTTACTGCCGTTTTGCTGATGAACTTGAAAAAGATAGCCAACAACTTGTACACCACGTTGGAGCGTGGCCCAAAGTGGTAGAATGGGATTTGCTTTTGTTCCTGCTCGTGGGTAAAACAACGGCAAAGAACTAGGGTGTCGTTCTTATTTTTAGTGCATAGAATAAATAAACTCGTGACGTTAC]

[+] EMBL BM588233             [CCGCTTCCTAATCGAACGGTTCGATAGTCCTTGACGGTGTTACACCATGGTTTCTGCTCCGACCTGTGTTCGCAAACGTACGCTGGACTTTAGCTGCAAGTATCGCAACTTAGACAAATTTTCCACCGATGTGGAACATTTCCTGGAAACGTACGATCAAATAGTGCAACACTCGCTGGCATACCACCGAAGCTTTCGGCGCCATCTGAAGCAACTGTACGAATGCGTGGTGGAGTTGTTACAAAAATTCCAGTACATTCAATCCAGCGGTACCAAAGGGCAGCTGTACATGGAGAAGTATTGCTGTGGCGTTTTGTTTGATGACTGCGAGGAACTTAAAAGGCACTACTTTGAGTTTCATAACTTTGCCCGACTCATTCATCCCAGCATAGTGGAGCTCCGGTCAGGGCATGGTAAGCTGCAGTTCTTCCATCGCCGTGTGCAGGAGTACACATTCTACGGTACCGAATTTACTGCCGTTTTGCTGATGAACTTGAAAAAGATAGCCAACAACTTGTACACCACGTTGGAGCGTGGCCCAAAGTGGTAGAATGGGATTTGCTTTTGTTCCTGCTCGTGGGTAAAACAACGGCAAAGAACTAGGGTGTCGTTCTT                                      ]
[+] EMBL BM627680             [         CCGCGAACGGTTCGATAGTCCTTGACGGTGTTACACCATGGTTTCTGCTCCGACCTGTGTTCGCAAACGTACGCTGGACTTTAGCTGCAAGTATCGCAACTTAGACAAATTTTCCACCGATGTGGAACATTTCCTGGAAACGTACGATCAAATAGTGCAACACTCGCTGGCATACCACCGAAGCTTTCGGCGCCATCTGAAGCAACTGTACGAATGCGTGGTGGAGTTGTTACAAAAATTCCAGTACATTCAATCCAGCGGTACCAAAGGGCAGCTGTACATGGAGAAGTATTGCTGTGGTGTTTTGTTTGATGACTGCGAGGAACTTAAAAGGCACTACTTTGAGTTTCATAACTTTGCCCGACTCATTCATCCCAGCATAGTCGAGCTCCGGTCAGGGCATGGTAAGCTGCAGTTCTTCCATCGCCGTGTGCAGGAGTACACATTCTACGGTACCGAATTTACTGCCGTTTTGCTGATGAACTTGAAAAAGATAGCCAACAACTTGTACACCACGTTGGAGCGTGGCCCAAAGTGGTAGAATGGGATTTGATTTTGTTCCTGCTCGTGGGTAAAACAACGGCAAAGAACTAGGGTGTCGTTC                                        ]
[+] EMBL BM580796             [         CCGCGAACGGTTCGATAGTCCTTGACGGTGTTACACCATGGTTTCTGCTCCGACCTGTGTTCGCAAACGTACGCTGGACTTTAGCTGCAAGTATCGCAACTTAGACAAATTTTCCACCGATGTGGAACATTTCCTGGAAACGTACGATCAAATAGTGCAACACTCGCTGGCATACCACCGAAGCTTTCGGCGCCATCTGAAGCAACTGTACGAATGCGTGGTGGAGTTGTTACAAAAATTCCAGTACATTCAATCCAGCGGTACCAAAGGGCAGCTGTACATGGAGAAGTATTGCTGTGGCGTTTTGTTTGATGACTGCGAGGAACTTAAAAGGCACTACTTTGAGTTTCATAACTTTGCCCGACTCATTCATCCCAGCATAGTGGAGCTCCGGTCAGGGCATGGTAAGCTGCAGTTCTTCCATCGCCGTGTGCAGGAGTACACATTCTACGGTACCGAATTTACTGCCGTTTTGCTGATGAACTTGAAAAAGATAGCCAACAACTTGTACACCACGTTGGga                                                                                                                         ]
[+] EMBL BX626969             [                      GATAGTCCTTGACGGTGTTACACCATGGTTTCTGCTCCGACCTGTGTTCGCAAACGTACGCTGGACTTTAGCTGCAAGTATCGCAACTTAGACAAATTTTCCACCGATGTGGAACATTTCCTGGAAACGTACGATCAAATAGTGCAACACTCGCTGGCATACCACCGAAGCTTTCGGCGCCATCTGAAGCAACTGTACGAATGCGTGGTGGAGTTGTTACAAAAATTCCAGTACATTCAATCCAGCGGTACCAAAGGGCAGCTGTACATGGAGAAGTATTGCTGTGGCGTTTTGTTTGATGACTGCGAGGAACTTAAAAGGCACTACTTTGAGTTTCATAACTTTGCCCGACTCATTCATCCCAGCATAGTGGAGCTCCGGTCAGGGCATGGTAAGCTGCAGTTCTTCCATCGCCGTGTGCAGGAGTACACATTCTACGGTACCGAATTTACTGCCGTTTTGCTGATGAACTTGAAAAAGATAGCCAACAACTTGTACACCACGTTGGAGCGTGGCCCAAAGTGGTAGAATGGGATTTGCTTTTGTTCCTGCTCGTGGGTAAAACAACGGCAAAGAACTAGGGTGTCGTTCTTATTTTTAGTGCATAGAATAAATA               ]
[+] EMBL BX625592             [                                                            GACCTGTGTTCGC AACGTACGCTGGACTTTAGCTGCAAGTATCGCAACTTAGACAAATTTTCCACCGATGTGGAACATTTCCTGGAAACGTACGATCAAATAGTGCAACACTCGCTGGCATACCACCGAAGCTTTCGGCGCCATCTGAAGCAACTGTACGAATGCGTGGTGGAGTTGTTACAAAAATTCCAGTACATTCAATCCAGCGGTACCAAAGGGCAGCTGTACATGGAGAAGTATTGCTGTGGCGTTTTGTTTGATGACTGCGAGGAACTTAAAAGGCACTACTTTGAGTTTCATAACTTTGCCCGACTCATTCATCCCAGCATAGTGGAGCTCCGGTCAGGGCATGGTAAGCTGCAGTTCTTCCATCGCCGTGTGCAGGAGTACACATTCTACGGTACCGAATTTACTGCCGTTTTGCTGATGAACTTGAAAAAGATAGCCAACAACTTGTACACCACGTTGGAGCGTGGCCCAAAGTGGTAGAATGGGATTTGCTTTTGTTCCTGCTCGTGGGTAAAACAACGGCAAAGAACTANGGTGTCGTTCTTATTTTTAGTGCATAGAATAAATAAACTCGTGA      ]
[+] EMBL BM591797             [                                                                                                                                                                                                                                                                                                                ccgGGCGTTTTGTTTGATGACTGCGAGGAACTTAAAAGGCACTACTTTGAGTTTCATAACTATGCCCGACTCATTCATCCCAGCATAGTGGAGCTCCGGTCAGGGCATGGTAAGCTGCAGTTCTTCCATCGCCGTGTGCAGGAGTACACATTCTACGGTACCGAATTTACTGCCGTTTTGCTGATGAACTTGAAAAAGATAGCCAACAACTTGTGCGCCACGTTGGAGCGTGGCCCAAAGTGGTAGAATGGGATTTGCTTTTGTTCCTGCTCGTGGGTAAAACAACGGCAAAGAACTAGGGTGTCGTTCTTATTTTTAGTGCATAGAATAAATAAACTCGTGACGTTAC]




>consensus_7796#0
CCGCTTCCTCCGCGAACGGTTCGATAGTCCTTGACGGTGTTACACCATGGTTTCTGCTCC
GACCTGTGTTCGCAAACGTACGCTGGACTTTAGCTGCAAGTATCGCAACTTAGACAAATT
TTCCACCGATGTGGAACATTTCCTGGAAACGTACGATCAAATAGTGCAACACTCGCTGGC
ATACCACCGAAGCTTTCGGCGCCATCTGAAGCAACTGTACGAATGCGTGGTGGAGTTGTT
ACAAAAATTCCAGTACATTCAATCCAGCGGTACCAAAGGGCAGCTGTACATGGAGAAGTA
TTGCTGTGGCGTTTTGTTTGATGACTGCGAGGAACTTAAAAGGCACTACTTTGAGTTTCA
TAACTTTGCCCGACTCATTCATCCCAGCATAGTGGAGCTCCGGTCAGGGCATGGTAAGCT
GCAGTTCTTCCATCGCCGTGTGCAGGAGTACACATTCTACGGTACCGAATTTACTGCCGT
TTTGCTGATGAACTTGAAAAAGATAGCCAACAACTTGTACACCACGTTGGAGCGTGGCCC
AAAGTGGTAGAATGGGATTTGCTTTTGTTCCTGCTCGTGGGTAAAACAACGGCAAAGAAC
TAGGGTGTCGTTCTTATTTTTAGTGCATAGAATAAATAAACTCGTGACGTTAC

consensusID : consensus_7796#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 541
fasta sequence

                              [GTGCAACACTCGCTGGCATACCACCGAAGCTTTCGGCGCCATCTGAAGCAACTGTACGAATGCGTGGTGGAGTTGTTACAAAAATTCCAGTACATTCAATCCAGCGGTACCAAAGGGCAGCTGTACATGGAGAAGTATTGCTGTGGTGTTTGTTTGATGACTGCGAGGAACTTAAAAGGCACTACTTTGAGTTTCATAACTTTGCCCGACTCATTCATCCCAGCATAGTCGAGCATTTTAAATTGTATCCTAATTTGTCCTGCAGCTCCGGTCAGGGCATGGTAAGCTGCAGTTCTTCCATCGCCGTGTGCAGGAGTACACATTCTACGGTACCGAATTTACTGCCGTTTTGCTGATGAACTTGAAAAAGATAGCCAACAACTTGTACACCACGTTGGAGCGTGGCCCAAAGTGGTAGAATGGGATTTGATTTTGTTCCTGCTCGTGGGTAAAACAACGGCAAAGAACTAGGGTGTCGTTCTTATTTTTAGTGCATAGAATAAATAAACTCGTGACGTTACAAAAAAAAANAAAAAAAAAC]

[+] EMBL AL931990             [GTGCAACACTCGCTGGCATACCACCGAAGCTTTCGGCGCCATCTGAAGCAACTGTACGAATGCGTGGTGGAGTTGTTACAAAAATTCCAGTACATTCAATCCAGCGGTACCAAAGGGCAGCTGTACATGGAGAAGTATTGCTGTGGTGTTTGTTTGATGACTGCGAGGAACTTAAAAGGCACTACTTTGAGTTTCATAACTTTGCCCGACTCATTCATCCCAGCATAGTCGAGCATTTTAAATTGTATCCTAATTTGTCCTGCAGCTCCGGTCAGGGCATGGTAAGCTGCAGTTCTTCCATCGCCGTGTGCAGGAGTACACATTCTACGGTACCGAATTTACTGCCGTTTTGCTGATGAACTTGAAAAAGATAGCCAACAACTTGTACACCACGTTGGAGCGTGGCCCAAAGTGGTAGAATGGGATTTGATTTTGTTCCTGCTCGTGGGTAAAACAACGGCAAAGAACTAGGGTGTCGTTCTTATTTTTAGTGCATAGAATAAATAAACTCGTGACGTTACAAAAAAAAANAAAAAAAAAC]




>consensus_7796#1
GTGCAACACTCGCTGGCATACCACCGAAGCTTTCGGCGCCATCTGAAGCAACTGTACGAA
TGCGTGGTGGAGTTGTTACAAAAATTCCAGTACATTCAATCCAGCGGTACCAAAGGGCAG
CTGTACATGGAGAAGTATTGCTGTGGTGTTTGTTTGATGACTGCGAGGAACTTAAAAGGC
ACTACTTTGAGTTTCATAACTTTGCCCGACTCATTCATCCCAGCATAGTCGAGCATTTTA
AATTGTATCCTAATTTGTCCTGCAGCTCCGGTCAGGGCATGGTAAGCTGCAGTTCTTCCA
TCGCCGTGTGCAGGAGTACACATTCTACGGTACCGAATTTACTGCCGTTTTGCTGATGAA
CTTGAAAAAGATAGCCAACAACTTGTACACCACGTTGGAGCGTGGCCCAAAGTGGTAGAA
TGGGATTTGATTTTGTTCCTGCTCGTGGGTAAAACAACGGCAAAGAACTAGGGTGTCGTT
CTTATTTTTAGTGCATAGAATAAATAAACTCGTGACGTTACAAAAAAAAANAAAAAAAAA
C

consensusID : consensus_7796#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 382
fasta sequence

                              [CCGCGGACGCGTGGGTGTACATGGAGAAGTATTGCTGTGGTGTTTTGTTTGATGACTGCGAGGAACTTAAAAGGCACTACTTTGAGTTTCATAACTTTGCCCGACTCATTCATCCCAGCATAGTCGAGCTCCGGTCAGGGCATGGTAAGCTGCAGTTCTTCCATCGCCGTGTGCAGGAGTACACATTCTACGGTACCGAATTTACTGCCGTTTTGCTGATGAACTTGAAAAAGATAGCCAACAACTTGTACACCACGTTGGAGCGTGGCCCAAAGTGGTAGAATGGGATTTGATTTTGTTCCTGCTCGTGGGTAAAACAACGGCAAAGAACTAGGGTGTCGTTCTTATTTTTAGTGCATAGAATAAATAAACTCGTGACGTT]

[+] EMBL BM648229             [CCGCGGACGCGTGGGTGTACATGGAGAAGTATTGCTGTGGTGTTTTGTTTGATGACTGCGAGGAACTTAAAAGGCACTACTTTGAGTTTCATAACTTTGCCCGACTCATTCATCCCAGCATAGTCGAGCTCCGGTCAGGGCATGGTAAGCTGCAGTTCTTCCATCGCCGTGTGCAGGAGTACACATTCTACGGTACCGAATTTACTGCCGTTTTGCTGATGAACTTGAAAAAGATAGCCAACAACTTGTACACCACGTTGGAGCGTGGCCCAAAGTGGTAGAATGGGATTTGATTTTGTTCCTGCTCGTGGGTAAAACAACGGCAAAGAACTAGGGTGTCGTTCTTATTTTTAGTGCATAGAATAAATAAACTCGTGACGTT]




>consensus_7796#2
CCGCGGACGCGTGGGTGTACATGGAGAAGTATTGCTGTGGTGTTTTGTTTGATGACTGCG
AGGAACTTAAAAGGCACTACTTTGAGTTTCATAACTTTGCCCGACTCATTCATCCCAGCA
TAGTCGAGCTCCGGTCAGGGCATGGTAAGCTGCAGTTCTTCCATCGCCGTGTGCAGGAGT
ACACATTCTACGGTACCGAATTTACTGCCGTTTTGCTGATGAACTTGAAAAAGATAGCCA
ACAACTTGTACACCACGTTGGAGCGTGGCCCAAAGTGGTAGAATGGGATTTGATTTTGTT
CCTGCTCGTGGGTAAAACAACGGCAAAGAACTAGGGTGTCGTTCTTATTTTTAGTGCATA
GAATAAATAAACTCGTGACGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7796#1      ------------------------------------------------------------
consensus_7796#2      ------------------------------------------------------------
consensus_7796#0      CCGCTTCCTCCGCGAACGGTTCGATAGTCCTTGACGGTGTTACACCATGGTTTCTGCTCC 60
                                                                                  

consensus_7796#1      ------------------------------------------------------------
consensus_7796#2      ------------------------------------------------------------
consensus_7796#0      GACCTGTGTTCGCAAACGTACGCTGGACTTTAGCTGCAAGTATCGCAACTTAGACAAATT 120
                                                                                  

consensus_7796#1      -------------------------------------------GTGCAACACTCGCTGGC 17
consensus_7796#2      ------------------------------------------------------------
consensus_7796#0      TTCCACCGATGTGGAACATTTCCTGGAAACGTACGATCAAATAGTGCAACACTCGCTGGC 180
                                                                                  

consensus_7796#1      ATACCACCGAAGCTTTCGGCGCCATCTGAAGCAACTGTACGAATGCGTGGTGGAGTTGTT 77
consensus_7796#2      ------------------------------------------------------------
consensus_7796#0      ATACCACCGAAGCTTTCGGCGCCATCTGAAGCAACTGTACGAATGCGTGGTGGAGTTGTT 240
                                                                                  

consensus_7796#1      ACAAAAATTCCAGTACATTCAATCCAGCGGTACCAAAGGGCAGCTGTACATGGAGAAGTA 137
consensus_7796#2      -----------------------------CCGCGGACGCGTGGGTGTACATGGAGAAGTA 31
consensus_7796#0      ACAAAAATTCCAGTACATTCAATCCAGCGGTACCAAAGGGCAGCTGTACATGGAGAAGTA 300
                                                      *  * * *  * ****************

consensus_7796#1      TTGCTGTGGTGTTT-GTTTGATGACTGCGAGGAACTTAAAAGGCACTACTTTGAGTTTCA 196
consensus_7796#2      TTGCTGTGGTGTTTTGTTTGATGACTGCGAGGAACTTAAAAGGCACTACTTTGAGTTTCA 91
consensus_7796#0      TTGCTGTGGCGTTTTGTTTGATGACTGCGAGGAACTTAAAAGGCACTACTTTGAGTTTCA 360
                      ********* **** *********************************************

consensus_7796#1      TAACTTTGCCCGACTCATTCATCCCAGCATAGTCGAGCATTTTAAATTGTATCCTAATTT 256
consensus_7796#2      TAACTTTGCCCGACTCATTCATCCCAGCATAGTCGAGC---------------------- 129
consensus_7796#0      TAACTTTGCCCGACTCATTCATCCCAGCATAGTGGAGC---------------------- 398
                      ********************************* ****                      

consensus_7796#1      GTCCTGCAGCTCCGGTCAGGGCATGGTAAGCTGCAGTTCTTCCATCGCCGTGTGCAGGAG 316
consensus_7796#2      ----------TCCGGTCAGGGCATGGTAAGCTGCAGTTCTTCCATCGCCGTGTGCAGGAG 179
consensus_7796#0      ----------TCCGGTCAGGGCATGGTAAGCTGCAGTTCTTCCATCGCCGTGTGCAGGAG 448
                                **************************************************

consensus_7796#1      TACACATTCTACGGTACCGAATTTACTGCCGTTTTGCTGATGAACTTGAAAAAGATAGCC 376
consensus_7796#2      TACACATTCTACGGTACCGAATTTACTGCCGTTTTGCTGATGAACTTGAAAAAGATAGCC 239
consensus_7796#0      TACACATTCTACGGTACCGAATTTACTGCCGTTTTGCTGATGAACTTGAAAAAGATAGCC 508
                      ************************************************************

consensus_7796#1      AACAACTTGTACACCACGTTGGAGCGTGGCCCAAAGTGGTAGAATGGGATTTGATTTTGT 436
consensus_7796#2      AACAACTTGTACACCACGTTGGAGCGTGGCCCAAAGTGGTAGAATGGGATTTGATTTTGT 299
consensus_7796#0      AACAACTTGTACACCACGTTGGAGCGTGGCCCAAAGTGGTAGAATGGGATTTGCTTTTGT 568
                      ***************************************************** ******

consensus_7796#1      TCCTGCTCGTGGGTAAAACAACGGCAAAGAACTAGGGTGTCGTTCTTATTTTTAGTGCAT 496
consensus_7796#2      TCCTGCTCGTGGGTAAAACAACGGCAAAGAACTAGGGTGTCGTTCTTATTTTTAGTGCAT 359
consensus_7796#0      TCCTGCTCGTGGGTAAAACAACGGCAAAGAACTAGGGTGTCGTTCTTATTTTTAGTGCAT 628
                      ************************************************************

consensus_7796#1      AGAATAAATAAACTCGTGACGTTACAAAAAAAAANAAAAAAAAAC 541
consensus_7796#2      AGAATAAATAAACTCGTGACGTT---------------------- 382
consensus_7796#0      AGAATAAATAAACTCGTGACGTTAC-------------------- 653
                      ***********************