These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7798#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1821 fasta sequence [CCGGGCACCGGCGCCTTCGGAACGCTAGGATTCGGCGGGGCCACCGGTGGAACGACGACGGCATTCGGAGCGACCCCCGCCAGTTCGGCACCGACGTTCGGGTTCGGCACCAACACTGCTACAGCGGCAACACCCGCGTTCGGTGGTTTCGGTACGGCCACATCGACCGCTGGTACCGGATTCGGAGGATTTGGAGCCACCACTGCCACCAGCACGAGTGCTCCAGCGTTCGGTGGGTTCGGCGCGACCGCACAACCGTTCGGCAGTTCGATAGCGACCACCTCCGCCCCATCGTTCTTCGGTGGGCTTGGAGCGAGCCAGCCACAAGCAAGCACGGCCACCGGGTTCGGTGGCTTCGGCACTGGCAGCACGTTTGGTGCGTCGACTTTTGGCCAGCCGGCCGCCGGTGGATTAAACTTTGGACAGTCAGCGTTCGGGCAGCAGCAGCAGCAACAGCAGCAGCTGCAACAACAACAACAGCAGCTCGCTCAAGCCCTCTCGCCCGAGGAAGCGTTCGTGCAGTCCGTGTTCAATGTGTCCATCTTTGGCGACGAGCGGGACACGGTCATTTCGAAATGGAACTACCTGCAGGCGATGCTCGGTACGGGCAAATCGTTCTACTCGCACAATGCACCGCCGGTCGAGATTACGCCGTCCAAC-TTTCTGTGCCGGTTCAAGACGATGGGCTACAGCAAGCTGCCCGGCCGGGACAACAAAACCGGCCTGGTGGGTTTGACCATCAACAAAACGGTGGCACAGATTAAAGAGCAGCAGCAACAGTTCATTGCCAGCATGAACCAAATCTTTGGCAACAAACCGAACATTACGATCGTGGTGGAGAACGTCAAGTCGATCAACGACACGAAGGTGCAGGTCATTATCTACATCGAGGAGAAGTCAACCATCTCGAACGAGGTGAAGCGCGTGCTGGCCACCGAGGTGGCCAGCTACCTCAATCAACCGATGCCAAAGCAGCAGCTTACCCAGCTCGGCATTGAGTCGGTCGTTGCGTTGGTGCTGCCGGAGGAGGACCAGCTGAAGGAGTATCTGGACAATCCGCCCAAGGGTATCGATCCGCGCATGTGGGAACAGGCCAAGATGGATAATCCCGACCCGAAGAGATTCATACCGGTGCCGATGATTGGTTTTCAGGATCTCAAATGGCGCATCAAGTGTCAGGAGAACGAAACCGAAATCCATGCCTCGTACCTTGCGAAGGTGGAGAAAGAGATCGCCGAGCTGAAGCAGCGGCACATGAACACGACCGCCAAGATAGCGGAGCATCGGCGCAACTTTGCCGAGCTGAGCCACCGCATACTGCGCGTCATTGTGAAGCAGGAAAGTACGCGCAAGCTTGGGCTGGCGCTGTCCCCGGAGGAGGAAGCGATACGGACGAAGCTGGAAAACATGCACGCGCTCGTGTCCACCCCGACCCAGTTCCGGGGCCGGCTGAGCGAGCTGCTGTCGCAGATGCGCATGCAGCGGAACCAGTGGGCACACGGCAACTTCCTGAACGAGTACACGCTGGATAAGGACGCCACGCAGGAGATGCAATCGTTCCTGACGATGCAGCAGAAGGCGGTCTCGTTCCTGATCGACACGATACACAAGGACATGAAAACGCTCAAGATCATTAGCGAGGGCATGACGCAGCTGGTGCAGAGCTAGGTGGAATGAAGGTGGTGGTGGTAGATTTGATTCAGGAACAGAAACCGCCAAACAAAATTCCTTATTGGTTCGATGTACGTTTATTGCGGAATAAAATTAATGCTAAATCGTAAAAAAAAAAAAAAAAAAAAAAAAAACTCCACGCGTCCGCGG] [+] EMBL BM641189 [CCGGGCACCGGCGCCTTCGGAACGCTAGGATTCGGCGGGGCCACCGGTGGAACGACGACGGCATTCGGAGCGACCCCCGCCAGTTCGGCACCGACGTTCGGGTTCGGCACCAACACTGCTACAGCGGCAACACCCGCGTTCGGTGGTTTCGGTACGGCCACATCGACCGCTGGTACCGGATTCGGAGGATTTGGAGCCACCACTGCCACCAGCACGAGTGCTCCAGCGTTCGGTGGGTTCGGCGCGACCGCACAACCGTTCGGCAGTTCGATAGCGACCACCTCCGCCCCATCGTTCTTCGGTGGGCTTGGAGCGAGCCAGCCACAAGCAAGCACGGCCACCGGGTTCGGTGGCTTCGGCACTGGCAGCACGTTTGGTGCGTCGACTTTTGGCCAGCCGGCCGCCGGTGGATTAAACTTTGGACAGTCAGCGTTCGGGCAGCAGCAGCAGCAACAGCAGCAGCTGCAACAACAACAACAGCAGCTCGCTCAAGCCCTCTCGCCCGAGGAAGCGTTCGTGCAGTCCGTGTTCAATGTGTCCATCTTTGGCGACGAGCGGGACACGGTCATTTCGAAATGGAACTACCTGCAGGCGATGCTCGGTACGGGCAAATCGTTCTACTCGCACAATGCACCGCCGGTCGAGATTACGCCGTCCAACTTTTCTGTGC ] [+] EMBL BM577714 [ ccGCAACACCCGCGTTCGGTGGTTTCGGTACGGCCACATCGACCGCTGGTACCGGATTCGGAGGATTTGGAGCCACCACTGCCACCAGCACGAGTGCTCCAGCGTTCGGTGGGTTCGGCGCGACCGCACAACCGTTCGGCAGTTCGATAGCGACCACCTCCGCCCCATCGTTCTTCGGTGGGCTTGGAGCGAGCCAGCCACAAGCAAGCACGGCCACCGGGTTCGGTGGCTTCGGCACTGGCAGCACGTTTGGTGCGTCGACTTTTGGCCAGCCGGCCGCCGGTGGATTAAACTTTGGACAGTCAGCGTTCGGGCAGCAGCAGCAGCAACAGCAGCAGCTGCAACAACAACAACAGCAGCTCGCTCAAGCCCTCTCGCCCGAGGAAGCGTTCGTGCAGTCCGTGTTCAATGTGTCCATCTTTGGCGACGAGCGGGACACGGTCATTTCGAAATGGAACTACCTGCAGGCGATGCTCGGTACGGGCAAATCGTTCTACTCGCACAATGCACCGCCGGTCGAGATTACGCCGTCCAAC TTTCTGTGCCGGTTCAAGACGATGGGCTACAGCAAGCTGCCCGGCCGGGACAACAAAACCGGCCTGGTGGGTTTGA ] [+] EMBL BX614575 [ TTTCTAAATGGAACTACCTGCAGGCGATGCTCGGCACGGGCAAATCGTTCTACTCGCACAATGCACCGCCGGTCGAGATTACGCCGTGCAAC TTCCTGTGCCGGTTCAAGACGATGGGCTACAGCAAG ] [+] EMBL BM609244 [ AATGGAACTACCTGCAGGCGATGCTCGGCACGGGCAAATCGTTCTACTCGCACAATGCACCGCCGGTCGAGATTACGCCGTCCAAC TTCCTGTGCCGGTTCAAGACGATGGGCTACAGCAAGCTGCCCGGCCGCGACAACAAAACCGGCCTGGTGGGTTTGACCATCAACAAAACGGTGGCACAGATTAAAGAGCAGCAGCAACAGTTCATTGCCAGCATGAACCAAATCTTTGGCAACAAACCGAACATTACGATCGTGGTGGAGAACGTCAAGTCGATCAACGACACGAAGGTGCAGGTCATTATCTACATCGAGGAGAAGTCAACCATCTCGAACGAGGTGAAGCGCGTGCTGGCCACCGAGGTGGCCAGCTACCTCAATCAACCGATGCCAAAGCAGCAGCTTACCCAGCTCGGCATTGAG ] [+] EMBL BM594186 [ ccgCAACAAAACGGTGGCACAGATTAAAGAGCAGCAGCAACAGTTCATTGCCAGCATGAACCAAATCTTTGGCAACAAACCGAACATTACGATCGTGGTGGAGAACGTCAAGTCGATCAACGACACGAAGGTGCAGGTCATTATCTACATCGAGGAAAAGTCAACCATCTCGAACGAGGTGAAGCGCGTGCTAGCCACCGAGGTGGCCAGCTACCTCAATCAACCGATGCCAAAGCAGCAGCTTACCCAGCTCGGCATTGAGTCGGTCGTTGCGTTGGTGCTGCCGGAGGAGGACCAGCTGAAGGAGTATCTGGACAATCCGCCCAAGGGTATCGATCCGCGCATGTGGGAACAGGCCAAGATGGATAATCCCGACCCGAAGAGATTCATACCGGTGCCGATGATTGGTTTTCAGGATCTCAAATGGCGCATCAAGTGTCAGGAGAACGAAACCGAAATCCATGCCTCGTACCTTGCGAAGGTGGAGAAAGAGATCGCCGAGCTGAAGCAGCGGCACATGAACACGACCGCCAAGATAGCGGAGCATCGGCGCAACTTTGCCGAGCTGAGCCACCGCATACTGCGCGTCATTGTG ] [-] EMBL BM623022 [ CGGAGCATCGGCGCAACTTTGCCGAGCTGAGCCACCGCATACTGCGCGTCATTGTGAAGCAGGAAAGTACGCGCAAGCTTGGGCTGGCGCTGTCCCCGGAGGAGGAAGCGATACGGACGAAGCTGGAAAACATGCACGCGCTCGTGTCCACCCCGACCCAGTTCCGGGGCCGGCTGAGCGAGCTGCTGTCGCAGATGCGCATGCAGCGGAACCAGTGGGCACACGGCAACTTCCTGAACGAGTACACGCTGGATAAGGACGCCACGCAGGAGATGCAATCGTTCCTGACGATGCAGCAGAAGGCGGTCTCGTTCCTGATCGACACGATACACAAGGACATGAAAACGCTCAAGATCATTAGCGAGGGCATGACGCAGCTGGTGCAGAGCTAGGTGGAATGAAGGTGGTGGTGGTAGATTTGATTCAGGAACAGAAACCGCCA ] [-] EMBL BM623061 [ CACACGGCAACTTCCTGAACGAGTACACGCTGGATAAGGACGCCACGCAGGAGATGCAATCGTTCCTGACGATGCAGCAGAAGGCGGTCTCGTTCCTGATCGACACGATACACAAGGACATGAAAACGCTCAAGATCATTAGCGAGGGCATGACGCAGCTGGTGCAGAGCTAGGTGGAATGAAGGTGGTGGTGGTAGATTTGATTCAGGAACAGAAACCGACAAACAAAATTCCTTATTGGTTCGATGTACGTTTATTGCGGAATAAAATTAATGCTAAATCGTAAAAAAAAAAAAAAAAAAAAAAAAAACTCCACGCGTCCGCGG] consensusID : consensus_7798#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 500 fasta sequence [TGCCCCGAGGTTTANGATGGGCTACAGCAAGCTGCCCGGCCGCGACAACAAAACCGGCCTGGTGGGTTTGACCATCAACAAAACGGTGGCACAGATTAAAGAGCAGCAGCAACAGTTCATTGCCAGCATGAACCAAATCTTTGGCAACAAACCGAACATTACGATCGTGGTGGAGAACGTCAAGTCGATCAACGACACGAAGGTGCAGGTCATTATCTACATCGAGGAGAAGTCAACCATCTCGAACGAGGTGAACGCGCGTTGCTGGCACCGAGGTGGCCAGCTACCTCAATCAACGATGCCAAAGCAGCCAGCTTAACCCAGCTACGGCCATTTGAGTCGGTACGTTTGCGTATGGTGCTGCCGGAGGAGGACCACTGAAGGAGTATCTGGACGAAACCGGCGAAGGGTATCGCATCCGCGCATTGTGGGAACCAGGCCCACGATTGGATTAATTCCCGACCGAAGCGATTCATACCTGGTGCCCAATGATTGGTNTN] [+] EMBL AL697467 [TGCCCCGAGGTTTANGATGGGCTACAGCAAGCTGCCCGGCCGCGACAACAAAACCGGCCTGGTGGGTTTGACCATCAACAAAACGGTGGCACAGATTAAAGAGCAGCAGCAACAGTTCATTGCCAGCATGAACCAAATCTTTGGCAACAAACCGAACATTACGATCGTGGTGGAGAACGTCAAGTCGATCAACGACACGAAGGTGCAGGTCATTATCTACATCGAGGAGAAGTCAACCATCTCGAACGAGGTGAACGCGCGTTGCTGGCACCGAGGTGGCCAGCTACCTCAATCAACGATGCCAAAGCAGCCAGCTTAACCCAGCTACGGCCATTTGAGTCGGTACGTTTGCGTATGGTGCTGCCGGAGGAGGACCACTGAAGGAGTATCTGGACGAAACCGGCGAAGGGTATCGCATCCGCGCATTGTGGGAACCAGGCCCACGATTGGATTAATTCCCGACCGAAGCGATTCATACCTGGTGCCCAATGATTGGTNTN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7798#0 CCGGGCACCGGCGCCTTCGGAACGCTAGGATTCGGCGGGGCCACCGGTGGAACGACGACG 60 consensus_7798#1 ------------------------------------------------------------ consensus_7798#0 GCATTCGGAGCGACCCCCGCCAGTTCGGCACCGACGTTCGGGTTCGGCACCAACACTGCT 120 consensus_7798#1 ------------------------------------------------------------ consensus_7798#0 ACAGCGGCAACACCCGCGTTCGGTGGTTTCGGTACGGCCACATCGACCGCTGGTACCGGA 180 consensus_7798#1 ------------------------------------------------------------ consensus_7798#0 TTCGGAGGATTTGGAGCCACCACTGCCACCAGCACGAGTGCTCCAGCGTTCGGTGGGTTC 240 consensus_7798#1 ------------------------------------------------------------ consensus_7798#0 GGCGCGACCGCACAACCGTTCGGCAGTTCGATAGCGACCACCTCCGCCCCATCGTTCTTC 300 consensus_7798#1 ------------------------------------------------------------ consensus_7798#0 GGTGGGCTTGGAGCGAGCCAGCCACAAGCAAGCACGGCCACCGGGTTCGGTGGCTTCGGC 360 consensus_7798#1 ------------------------------------------------------------ consensus_7798#0 ACTGGCAGCACGTTTGGTGCGTCGACTTTTGGCCAGCCGGCCGCCGGTGGATTAAACTTT 420 consensus_7798#1 ------------------------------------------------------------ consensus_7798#0 GGACAGTCAGCGTTCGGGCAGCAGCAGCAGCAACAGCAGCAGCTGCAACAACAACAACAG 480 consensus_7798#1 ------------------------------------------------------------ consensus_7798#0 CAGCTCGCTCAAGCCCTCTCGCCCGAGGAAGCGTTCGTGCAGTCCGTGTTCAATGTGTCC 540 consensus_7798#1 ------------------------------------------------------------ consensus_7798#0 ATCTTTGGCGACGAGCGGGACACGGTCATTTCGAAATGGAACTACCTGCAGGCGATGCTC 600 consensus_7798#1 ------------------------------------------------------------ consensus_7798#0 GGTACGGGCAAATCGTTCTACTCGCACAATGCACCGCCGGTCGAGATTACGCCGTCCAAC 660 consensus_7798#1 ------------------------------------------------------------ consensus_7798#0 TTTCTGTGCCGGTTCAAGACGATGGGCTACAGCAAGCTGCCCGGCCGGGACAACAAAACC 720 consensus_7798#1 ----TGCCCCGAGGTTT-ANGATGGGCTACAGCAAGCTGCCCGGCCGCGACAACAAAACC 55 ** *** * *************************** ************ consensus_7798#0 GGCCTGGTGGGTTTGACCATCAACAAAACGGTGGCACAGATTAAAGAGCAGCAGCAACAG 780 consensus_7798#1 GGCCTGGTGGGTTTGACCATCAACAAAACGGTGGCACAGATTAAAGAGCAGCAGCAACAG 115 ************************************************************ consensus_7798#0 TTCATTGCCAGCATGAACCAAATCTTTGGCAACAAACCGAACATTACGATCGTGGTGGAG 840 consensus_7798#1 TTCATTGCCAGCATGAACCAAATCTTTGGCAACAAACCGAACATTACGATCGTGGTGGAG 175 ************************************************************ consensus_7798#0 AACGTCAAGTCGATCAACGACACGAAGGTGCAGGTCATTATCTACATCGAGGAGAAGTCA 900 consensus_7798#1 AACGTCAAGTCGATCAACGACACGAAGGTGCAGGTCATTATCTACATCGAGGAGAAGTCA 235 ************************************************************ consensus_7798#0 ACCATCTCGAACGAGGTGAA-GCGCGTGCTGGCCACCGAGGTGGCCAGCTACCTCAATCA 959 consensus_7798#1 ACCATCTCGAACGAGGTGAACGCGCGTTGCTGGCACCGAGGTGGCCAGCTACCTCAATCA 295 ******************** ****** * *************************** consensus_7798#0 ACCGATGCCAAAGCAGC-AGCTTA-CCCAGCT-CGGCA--TTGAGTCGGT-CGTT-GCGT 1012 consensus_7798#1 AC-GATGCCAAAGCAGCCAGCTTAACCCAGCTACGGCCATTTGAGTCGGTACGTTTGCGT 354 ** ************** ****** ******* **** ********** **** **** consensus_7798#0 -TGGTGCTGCCGGAGGAGGACCAGCTGAAGGAGTATCTGGAC-AATCCGCCCAAGGGTAT 1070 consensus_7798#1 ATGGTGCTGCCGGAGGAGGACCA-CTGAAGGAGTATCTGGACGAAACCGGCGAAGGGTAT 413 ********************** ****************** ** *** * ******** consensus_7798#0 CG-ATCCGCGCAT-GTGGGAACAGG--CCAAGATGGA--TAATCCCGACCCGAAGAGATT 1124 consensus_7798#1 CGCATCCGCGCATTGTGGGAACCAGGCCCACGATTGGATTAATTCCCGACCGAAGCGATT 473 ** ********** ******** * *** *** * **** ** ****** **** consensus_7798#0 CATACC-GGTGCC-GATGATTGGTTTTCAGGATCTCAAATGGCGCATCAAGTGTCAGGAG 1182 consensus_7798#1 CATACCTGGTGCCCAATGATTGGTNTN--------------------------------- 500 ****** ****** ********* * consensus_7798#0 AACGAAACCGAAATCCATGCCTCGTACCTTGCGAAGGTGGAGAAAGAGATCGCCGAGCTG 1242 consensus_7798#1 ------------------------------------------------------------ consensus_7798#0 AAGCAGCGGCACATGAACACGACCGCCAAGATAGCGGAGCATCGGCGCAACTTTGCCGAG 1302 consensus_7798#1 ------------------------------------------------------------ consensus_7798#0 CTGAGCCACCGCATACTGCGCGTCATTGTGAAGCAGGAAAGTACGCGCAAGCTTGGGCTG 1362 consensus_7798#1 ------------------------------------------------------------ consensus_7798#0 GCGCTGTCCCCGGAGGAGGAAGCGATACGGACGAAGCTGGAAAACATGCACGCGCTCGTG 1422 consensus_7798#1 ------------------------------------------------------------ consensus_7798#0 TCCACCCCGACCCAGTTCCGGGGCCGGCTGAGCGAGCTGCTGTCGCAGATGCGCATGCAG 1482 consensus_7798#1 ------------------------------------------------------------ consensus_7798#0 CGGAACCAGTGGGCACACGGCAACTTCCTGAACGAGTACACGCTGGATAAGGACGCCACG 1542 consensus_7798#1 ------------------------------------------------------------ consensus_7798#0 CAGGAGATGCAATCGTTCCTGACGATGCAGCAGAAGGCGGTCTCGTTCCTGATCGACACG 1602 consensus_7798#1 ------------------------------------------------------------ consensus_7798#0 ATACACAAGGACATGAAAACGCTCAAGATCATTAGCGAGGGCATGACGCAGCTGGTGCAG 1662 consensus_7798#1 ------------------------------------------------------------ consensus_7798#0 AGCTAGGTGGAATGAAGGTGGTGGTGGTAGATTTGATTCAGGAACAGAAACCGCCAAACA 1722 consensus_7798#1 ------------------------------------------------------------ consensus_7798#0 AAATTCCTTATTGGTTCGATGTACGTTTATTGCGGAATAAAATTAATGCTAAATCGTAAA 1782 consensus_7798#1 ------------------------------------------------------------ consensus_7798#0 AAAAAAAAAAAAAAAAAAAAAAACTCCACGCGTCCGCGG 1821 consensus_7798#1 --------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||