These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7800#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1225 fasta sequence [GTGCATCAGGCGCTGGCCCCAACGGAAATGGTAGCCGAAGCCGCCGAGGAGGAAGATGGATGGGGAGTAGACGACGATTTGCACGATGGTGACCGATTTGAGGATGCGAAGGAAAACGACGAAGCTAAGACTGGCGAAGGAGGCGAGGGAGCCGGTTGGGATGTGGGCGATGATGATCTGGAGCTGCCCGAAGAATTGATATCGAAAATTTCAGCTTCAAATGCGGCCGGCACCAAGAACTTCTTTGCGGCACCACCAAAAGGACATCCCCCGTCTCATTTTTGGACCATCAATTCACAGCTGGCTGCCGATCATGTACGAGCGGGTTCCTACGATTCTGCTTGCCGTTTGCTGAACGATCAAGTCGGTGTAGTTAACTTTGCCCCGTACAAGGAACTTTTTATGGAATCATACGCAGCCTCGAAAACGTCGTACAGCAGTTTGCCACACGTCAGTTCGCTGTCTGCCCATCCTAACCGAAATTGGAAGGAACTGAATCCCAAGAACGGTCACCCCACGCTTGCCTACAAGTTGAATGATCTTGTGCAAAATTTGCAAACATGCTACCAACTAACAACTACCGGCAAATTCGTTGAAGCAATCGATAAACTGCAAAATATCATCCTCTGCATTCCGCTGCTAGTCGTGGAAACGCGACAGGAAATAGCCGAAGCGCAACAGTTGCTCACCATTTGCCGAGAATACGTGGTGGGTCTCCAAATGGAAACAGTACGGAAAACGCTACCGAAGAACACACTCGACGAGCAAAAGCGTATATGTGAACTGGCCGCATACTTTACTCACGTGAACTTGCAACCCGTTCATCAGATACTTACCCTGCGAACAGCACTAAATCTGTTTTTCAAGCTAAAGAACTACAAAACAGCGGCTTCCTTTGCCCGTCGTTTGCTCGAGCTCGGTCCACGTCCTGAGGTAGCTCAGCAGGCACGCAAAATATTGCAAGCATGCGAAATGAATGAATCAGACGAACACACTTTGCATTACGATGAGCATAATCCGTTCACATTGTGTGCCGTTACTTACAAACCCATCTATCGCGGTAAACCGGAGGAAAAGTGTTCTCTATGTTCTGCTTCGTACCAGCCCCCGTATAAGGGTGTCACGTGCGTCGTCTGCAAGGTGGCCGAAGTGGGCAAAGATGTAATTGGTTTGCGCATTAGTGCATCACAGTTCAAGTAAGGTTAATGGTAATAGTAATGTATGC] [+] EMBL BX628016 [GTGCATCAGGCGCTGGCCCCAACGGAAATGGTAGCCGAAGCCGCCGAGGAGGAAGATGGATGGGGAGTAGACGACGATTTGCACGATGGTGACCGATTTGAGGATGCGAAGGAAAACGACGAAGCTAAGACTGGCGAAGGAGGCGAGGGAGCCGGTTGGGATGTGGGCGATGATGATCTGGAGCTGCCCGAAGAATTGATATCGAAAATTTCAGCTTCAAATGCGGCCGGCACCAAGAACTTCTTTGCGGCACCACCAAAAGGACATCCCCCGTCTCATTTTTGGACCATCAATTCACAGCTGGCTGCCGATCATGTACGAGCGGGTTCCTACGATTCTGCTTGCCGTTTGCTGAACGATCAAGTCGGTGTAGTTAACTTTGCCCCGTACAAGGAACTTTTTATGGAATCATACGCAGCCTCGAAAACGTCGTACAGCAGTTTGCCACACGTCAGTTCGCTGTCTGCCCATCCTAACCGAAATTGGAAGGAACTGAATCCCAAGAACGGTCACCCCACGCTTGCCTACAAGTTGAATGATCTTGTGCAAAATTTGCAAACATGCTACCAACTAACAACTACCGGCAAATTCGTTGAAGCAATCGATAAACTGCAAAATATCATCCTCTGCATTCCGCTGCTAGTCGTGGAAACGCGGCAGGAAATAGCCGAAGCGCAACAGTTGCTCACCATTT ] [+] EMBL BX608960 [ ATTCACAGCTGGCTGCCGATCATGTACGAGCGGGTTCCTACGATTCTGCTTGCCGTTTGCTGAACGATCAAGTCGGTGTAGTTAACTTTGCCCCGTACAAGGAACTTTTTATGGAATCATACGCAGCCTCGAAAACGTCGTACAGCAGTTTGCCACACGTCAGTTCGCTGTCTGCCCATCCTAACCGAAATTGGAAGGAACTGAATCCCAAGAACGGTCACCCCACGCTTGCCTACAAGTTGAATGATCTTGTGCAAAATTTGCAAACATGCTACCAACTAACAACTACCGGCAAATTCGTTGAAGCAATCGATAAACTGCAAAATATCATCCTCTGCATTCCGCTGCTAGTCGTGGAAACGCGACAGGAAATAGCTGAAGCGCAACAGTTGCTCACCATTTGCCGAGAATACGTGGTGGGTCTCCAAATGGAAACAGTACGGAAAACGCTACCGAAGAACACACTCGACGAGCAAAAGCGTATATGTGAACTGGCCGCATACTTTACTCACGTGAACTTGCAACCCGTTCATCAGATACTTACCCTGCGAACAGCACTAAATCTGTTTTTCAAGCTAAAGAACTACAAAACAGCGGCTTCCTTTGCCCGTCGTTTGCTCGAGCTCGGTCCACGTCCTGAGGTAGCTCAGCAGGCACGCAAAATATTGCAAGC ] [+] EMBL BX610432 [ ATTCACAGCTGGCTGCCGATCATGTACGAGCGGGTTCCTACGATTCTGCTTGCCGTTTGCTGAACGATCAAGTCGGTGTAGTTAACTTTGCCCCGTACAAGGAACTTTTTATGGAATCATACGCAGCCTCGAAAACGTCGTACAGCAGTTTGCCACACGTCAGTTCGCTGTCTGCCCATCCTAACCGAAATTGGAAGGAACTGAATCCCAAGAACGGTCACCCCACGCTTGCCTACAAGTTGAATGATCTTGTGCAAAATTTGCAAACATGCTACCAACTAACAACTACCGGCAAATTCGTTGAAGCAATCGATAAACTGCAAAATATCATCCTCTGCATTCCGCTGCTAGTCGTGGAAACGCGACAGGAAATAGCTGAAGCGCAACAGTTGCTCACCATTTGCCGAGAATACGTGGTGGGTCTCCAAATGGAAACAGTACGGAAAACGCTACCGAAGAACACACTCGACGAGCAAAAGCGTATATGTGAACTGGCCGCATACTTTACTCACGTGAACTTGCAACCCGTTCATCAGATACTTACCCTGCGAACAGCACTAAATCTGTTTTTCAAGCTAAAGAACTACAAAACAGCGGCTTCCTTTGCCCGTCGTTTGCTCGAGCTCGGTCCACGTCCTGAGGTA ] [+] EMBL BX629000 [ AGCAGTTTGCCACACGTCAGTTCGCTGTCTGCCCATCCTAACCGAAATTGGAAGGAACTGAATCCCAAGAACGGTCACCCCACGCTTGCCTACAAGTTGAATGATCTTGTGCAAAATTTGCAAACATGCTACCAACTAACAACTACCGGCAAATTCGTTGAAGCAATCGATAAACTGCAAAATATCATCCTCTGCATTCCGCTGCTAGTCGTGGAAACGCGGCAGGAAATAGCCGAAGCGCAACAGTTGCTCACCATTTGCCGAGAATACGTGGTGGGTCTCCAAATGGAAACAGTGCGGAAAACGCTACCGAAGAACACACTCGACGAGCAAAAGCGTATATGTGAACTGGCCGCATACTTTACTCACGTGAACTTGCAACCCGTTCATCAGATACTTACCCTGCGAACAGCACTAAATCTGTTTTTCAAGCTAAAGAACTACAAAACAGCGGCTTCCTTTGCCCGTCGTTTGCTCGAGCTCGGTCCACGTCCTGAGGTAGCTCAGCAGGCACGCAAAATATTGCAAGCATGCGAAATGAATGAATCAGACGAACACACTTTGCATTACGATGAGCATAATCCGTTCACATTGTGTGCCGTTACTTACAAACCCATCTATCGCGGTAAACCGGAGGAAAAGTGTTCTCTATGTTCTGCTTCGTACCAGCCCCCGTATAAGGGTGTCACGTGCGTCGTCTGCAANGTGGCCGAAGTGGGCAAAGATGTAATTGGTTTGCGCA ] [+] EMBL BM603582 [ ccgCAACTAACAACTACCGGCAAATTCGTTGAAGCAATCGATAAACTGCAAAATATCATCCTCTGCATTCCGCTGCTAGTCGTGGAAACGCGACAGGAAATAGCCGAAGCGCAACAGTTGCTCACCATTTGCCGAGAATACGTGGTAGGTCTCCAAATGGAAACAGTGCGGAAAACGCTACCGAAGAACACACTCGACGAGCAAAAGCGTATATGTGAACTGGCCGCATACTTTACTCATGTGAACTTGCAACCCGTTCATCAGATACTTACCCTGCGAACAGCACTAAATCTGTTTTTCAAGCTAAAGAACTACAAAACAGCGGCTTCCTTTGCCCGTCGTTTGCTGGAGCTCGGTCCACGTCCTGAGGTAGCTCAGCAGGCACGCAAAATATTGCAAGCATGCGAAATGAATGAATCAGACGAACATACTTTGCATTACGATGAGCATAATCCGTTCACATTGTGTGCCGTTACTTACAAACCCATCTATCGCGGTAAACCGGAGGAAAAGTGTTCTCTATGTTCTGCTTCGTACCAGCCCCCGTATAAGGGTGTCACGTGCGTCGTCTGCAAGGTGGCCGAAGTGGGCAAAGATGTAATTGGTTTGCGCATTAGTGCATCACAGTTCA ] [+] EMBL BX614474 [ CCGCATACTTTACTCACGTGAACTTGCAACCCGTTCATCATATACTTACCCTGCGAACAGCACTAAATCTGTTTTTCAAGCTAAAGAACTACAAAACAGCGGCTTCCTTTGCCCGTCGTTTGCTCGAGCTCGGTCCACGTCCTGAGGTAGCTCAGCAGGCACGCAAAATATTGCAAGCATGCGAAATGAATGAATCAGACGAACACACTTTGCATTACGATGAGCATAATCCGTTCACATTGTGTGCCGTTACTTACAAACCCATCTATCGCGGTAAACCGGAGGAAAAGTGTTCTCTATGTTCTGCTTCGTACCAGCCCCCGTATAAGGGTGTCACGTGCGTCGTCTGCAAGGTGGCCGAAGTGGGCAAAGATGTAATTGGTTTGCGCATTAGTGCATCACAGTTCAAGTAAGGTTAATGGTAATAGTAATGTATGC] consensusID : consensus_7800#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 470 fasta sequence [GGCAGAATCGCCACGAGTGGTACTGGCCGCATACTTTACTCACCGTGAACTTGCAACCCGTTCATCAGATACTTACCCTGCGAACAGCACTAAATCTGTTTTTCAAGCTAAAGAACTACAAAACAGCGGCTTCCTTTGCCCGTCGTTTGCTCGAGCTCGGTCCACGTCCTGAGGTAGCTCAGCAGGCACGCAAAATATTGCAAGCATGCGAAATGAATGAATCAGACGAACACACTTTGCATTACGATGGAGCATAATCCGTTCACATTGTGTGCCGTTACTTACAAAGCCCATCTATCGCGGTAAACCGGAGGAAAAGTGTTCTCTATGTTCTGCGTTCGTACCAGGGCCCCCGTATAAGGGTGTCACGTGCGTCGTCTGCAAAGNTGGCCGAANTGGGCAAAGATGTANATTGGGNNTTGCGCATTAGTGGCATCACAGGNGTCAAAGTAAGGTGAATAGGTAATAGT] [+] EMBL BX468035 [GGCAGAATCGCCACGAGTGGTACTGGCCGCATACTTTACTCACCGTGAACTTGCAACCCGTTCATCAGATACTTACCCTGCGAACAGCACTAAATCTGTTTTTCAAGCTAAAGAACTACAAAACAGCGGCTTCCTTTGCCCGTCGTTTGCTCGAGCTCGGTCCACGTCCTGAGGTAGCTCAGCAGGCACGCAAAATATTGCAAGCATGCGAAATGAATGAATCAGACGAACACACTTTGCATTACGATGGAGCATAATCCGTTCACATTGTGTGCCGTTACTTACAAAGCCCATCTATCGCGGTAAACCGGAGGAAAAGTGTTCTCTATGTTCTGCGTTCGTACCAGGGCCCCCGTATAAGGGTGTCACGTGCGTCGTCTGCAAAGNTGGCCGAANTGGGCAAAGATGTANATTGGGNNTTGCGCATTAGTGGCATCACAGGNGTCAAAGTAAGGTGAATAGGTAATAGT] consensusID : consensus_7800#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 466 fasta sequence [TTGGCGTCCAGGCAGACTCGGTTTTAAGGCGAAATTGGAAGGAACTGAATCCCAAGAACGGTCGACCCCACGCTTGGCCTACAACGTTGAATGATCTTGTGCAAACATTTGCAAGACATGCTACCAACTAACAACTACCGGGCAAATTCGTTGAAGCAATCGATAAACTGCAAAATATCATCCTCTGCATTCCGCTGCTAGTCGTGGAAACGCGGCAGGAAATAGCCGAAGCGCAACAGTTGCTCACCATTTGCCGAGAATACGTGGTGGGTACTCCAAATGGAAACAGTGCGGAAAACGCTACCGAAGAACACACTCGACGAGCAAAAGCGTATATGTGAACTGGCCGCATACTTTACTCACGTGAACTTGCAACCCGTTCATCAGATACTTACCCTGCGAACAGCGACTAAGATCTGGTTNTTTCAAGGCTGAAAGGAACTACAAGAAGCAGCGGCTTCCTTTA] [+] EMBL BX469055 [TTGGCGTCCAGGCAGACTCGGTTTTAAGGCGAAATTGGAAGGAACTGAATCCCAAGAACGGTCGACCCCACGCTTGGCCTACAACGTTGAATGATCTTGTGCAAACATTTGCAAGACATGCTACCAACTAACAACTACCGGGCAAATTCGTTGAAGCAATCGATAAACTGCAAAATATCATCCTCTGCATTCCGCTGCTAGTCGTGGAAACGCGGCAGGAAATAGCCGAAGCGCAACAGTTGCTCACCATTTGCCGAGAATACGTGGTGGGTACTCCAAATGGAAACAGTGCGGAAAACGCTACCGAAGAACACACTCGACGAGCAAAAGCGTATATGTGAACTGGCCGCATACTTTACTCACGTGAACTTGCAACCCGTTCATCAGATACTTACCCTGCGAACAGCGACTAAGATCTGGTTNTTTCAAGGCTGAAAGGAACTACAAGAAGCAGCGGCTTCCTTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7800#0 GTGCATCAGGCGCTGGCCCCAACGGAAATGGTAGCCGAAGCCGCCGAGGAGGAAGATGGA 60 consensus_7800#1 ------------------------------------------------------------ consensus_7800#2 ------------------------------------------------------------ consensus_7800#0 TGGGGAGTAGACGACGATTTGCACGATGGTGACCGATTTGAGGATGCGAAGGAAAACGAC 120 consensus_7800#1 ------------------------------------------------------------ consensus_7800#2 ------------------------------------------------------------ consensus_7800#0 GAAGCTAAGACTGGCGAAGGAGGCGAGGGAGCCGGTTGGGATGTGGGCGATGATGATCTG 180 consensus_7800#1 ------------------------------------------------------------ consensus_7800#2 ------------------------------------------------------------ consensus_7800#0 GAGCTGCCCGAAGAATTGATATCGAAAATTTCAGCTTCAAATGCGGCCGGCACCAAGAAC 240 consensus_7800#1 ------------------------------------------------------------ consensus_7800#2 ------------------------------------------------------------ consensus_7800#0 TTCTTTGCGGCACCACCAAAAGGACATCCCCCGTCTCATTTTTGGACCATCAATTCACAG 300 consensus_7800#1 ------------------------------------------------------------ consensus_7800#2 ------------------------------------------------------------ consensus_7800#0 CTGGCTGCCGATCATGTACGAGCGGGTTCCTACGATTCTGCTTGCCGTTTGCTGAACGAT 360 consensus_7800#1 ------------------------------------------------------------ consensus_7800#2 ------------------------------------------------------------ consensus_7800#0 CAAGTCGGTGTAGTTAACTTTGCCCCGTACAAGGAACTTTTTATGGAATCATACGCAGCC 420 consensus_7800#1 ------------------------------------------------------------ consensus_7800#2 ------------------------------------------------------------ consensus_7800#0 TCGAAAACGTCGTACAGCAGTTTGCCACACGTCAGTTCGCTGTCTGCCCATCCTAACCGA 480 consensus_7800#1 ------------------------------------------------------------ consensus_7800#2 ------------------------------------------------------------ consensus_7800#0 AATTGGAAGGAACTGAATCCCAAGAACGGTCACCCCACGCTTGCCTACAAGTTGAATGAT 540 consensus_7800#1 ------------------------------------------------------------ consensus_7800#2 ------------------------------------------------------------ consensus_7800#0 CTTGTGCAAAATTTGCAAACATGCTACCAACTAACAACTACCGGCAAATTCGTTGAAGCA 600 consensus_7800#1 ------------------------------------------------------------ consensus_7800#2 ------------------------------------------------------------ consensus_7800#0 ATCGATAAACTGCAAAATATCATCCTCTGCATTCCGCTGCTAGTCGTGGAAACGCGACAG 660 consensus_7800#1 ------------------------------------------------------------ consensus_7800#2 ------------------------------------------------------------ consensus_7800#0 GAAATAGCCGAAGCGCAACAGTTGCTCACCATTTGCCGAGAATACGTGGTGGGTCTCCAA 720 consensus_7800#1 ------------------------------------------------------------ consensus_7800#2 ------------------------------------------------------------ consensus_7800#0 ATGGAAACAGTACGGAAAACGCTACCGAAGAACACACTCGACGAGCAAAAGCGT-ATATG 779 consensus_7800#1 -------------------------------------------GGCAGAATCGCCACGAG 17 consensus_7800#2 -----------------------------------------TTGGCGTCCAGGC-AGACT 18 ** * * consensus_7800#0 TGA-ACTGGCCGCATACTTTACTCAC-GTGAACTTGCAACCCGTTCATCAGATACTTACC 837 consensus_7800#1 TGGTACTGGCCGCATACTTTACTCACCGTGAACTTGCAACCCGTTCATCAGATACTTACC 77 consensus_7800#2 CGGTTTTAAGGCGAAATTGGAAGGAACTGAATCCCAAGAACGGTCGACCCCACGCTTGGC 78 * * * * * * * * * * * ** * * * *** * consensus_7800#0 CTGCGAACAGCACTAAATCTGTTTTTCAAGCTAAAGAACTACAAAACAGCGGCTTCCTTT 897 consensus_7800#1 CTGCGAACAGCACTAAATCTGTTTTTCAAGCTAAAGAACTACAAAACAGCGGCTTCCTTT 137 consensus_7800#2 CT----ACAACGTTGAATGATCTTGTG----CAAACATTTGCAAGACAT--GCTACCAAC 128 ** *** * * *** ** * *** * * *** *** *** ** consensus_7800#0 GCCCGTCGTTTGCTCGAGCTCGGTCCACGTCCTGAGGTAGCTCAGCAGGCACGCAAAATA 957 consensus_7800#1 GCCCGTCGTTTGCTCGAGCTCGGTCCACGTCCTGAGGTAGCTCAGCAGGCACGCAAAATA 197 consensus_7800#2 TAACAACTACCGGGCAAATTCG---------TTGAAGCAA-TCGATAAAC-TGCAAAATA 177 * * * * * *** *** * * ** * * ******** consensus_7800#0 TTGCAAGCATGCGAAATGA-ATGAATCAGACGAACACACTTTGCATTACGATG-AGCATA 1015 consensus_7800#1 TTGCAAGCATGCGAAATGA-ATGAATCAGACGAACACACTTTGCATTACGATGGAGCATA 256 consensus_7800#2 TCATCCTC-TGCATTCCGCTGCTAGTCGTGGAAACGCGGCAGGAAATA-GCCGAAGCGCA 235 * * *** * * ** *** * * * ** * * *** * consensus_7800#0 ATCCGTTCACATTGTGTGCCGTTACTTACAAA-CCCATCTATCGCG-GTAAACCGGAGGA 1073 consensus_7800#1 ATCCGTTCACATTGTGTGCCGTTACTTACAAAGCCCATCTATCGCG-GTAAACCGGAGGA 315 consensus_7800#2 ACAGTTGCTCACCATTTGCCGAGAAT-ACGTGGTGGGTACTCCAAATGGAAACAGTGCGG 294 * * * ** * ***** * * ** * * * **** * * consensus_7800#0 AAAGTGTTCTCTATGTTCTGC-TT--CGTACCAG--CCCCCGTATAAGGGTGTCACGTGC 1128 consensus_7800#1 AAAGTGTTCTCTATGTTCTGCGTT--CGTACCAGGGCCCCCGTATAAGGGTGTCACGTGC 373 consensus_7800#2 AAAACGCTACCGAAGAACACACTCGACGAGCAAAAGCGTATATGTGAACTGGCCGCATAC 354 *** * * * * * * * ** * * * * * * * * * * * consensus_7800#0 GTCGTCTGCA-A-GGTGGC--CGAAGTGGGCAAAGATGTAATT---GGTTTGCGCATTAG 1181 consensus_7800#1 GTCGTCTGCA-AAGNTGGC--CGAANTGGGCAAAGATGTANATTGGGNNTTGCGCATTAG 430 consensus_7800#2 TTTACTCACGTGAACTTGCAACCCGTTCATCAGATACTTACCCTGCGAACAGCGACTAAG 414 * * * ** * * ** * * ** * *** * ** consensus_7800#0 ---TG--CATCACAG---TTCAAGTAAGGTTAAT-GGTAATAGTAATGTATGC 1225 consensus_7800#1 ---TGG-CATCACAGGNGTCAAAGTAAGGTGAATAGGTAATAGT--------- 470 consensus_7800#2 ATCTGGTTNTTTCAAGGCTGAAAGGAACTACAAGAAGCAGCGGCTTCCTTTA- 466 ** * ** * *** ** ** * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||