These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7811#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 996 fasta sequence [ATCGCCCGAGGTTAGTCCGGTTTGGTTTGTGGTGTGGTGCTTTCGGGCTTTGGCGATTTTGTGATTTTTCCCCCGACGTTACCGAC-GGTGGTTGAGAAACAAATCCCTGTGCAGAGCGCAGGATTGTGTGTTGTGAAA-----AAATCAGTGAAGAAAGCATAGTTTGGGCAAAATGAAGCTTTTGATTGTACTCGCACTGGTTGCATCCGCTTACGCGTATCCGCAGCATGAACATCATGAACGTCACGAGCATCACGAAACAACCACGTACATTCCGATCCTAAAGTATGACAAACAACAGGGAGAAGATGGCAGTTATAGAACTATCTACCAGACGGGCAACAACATTGTTCACGAAGAGTCCGGCTACCTGAAGGACGCTTCGGAAGACCATCCGAATGGAATCTTGGTCCAACAGGGCGCCTACTCGTACGAAGCCCCCAACGGTGACGTCATCCAGGTGCAGTATACGGCCGACGAGAATGGGTTCCGTGTGCAGAGCGACAGCCTGCCGACGCCACCCCCTGTGCCGCCAGCAATCCAGGAAGGTCTGAAGGAGATCTACGAGGGCATCAAGCGCCGGGAGCAGGAAGCGAAGAACAATCCCAAGTACGCGGAGGACGAAGCCAGACGGGCTCAGCTAGACTACAACGGACAGTACTACAACCAGTAGAGCCGGTGTGGTGTACCCTCTTGTACGGTGACCAACCGCCAGGTGGCTTCGTTCAATG-AAGAACT-CCTTCGTCTAGCTTCGTTCGTAGCGTGCACGAGCTGTTAAGAAAGCGTTCTAGCGCTGTTCAGTAGATTTCCTCTCGACGCATATTTATAATATTTAAGCCTCTCAAAGCGATGGCTACGCGAAGCGCGCATTGCTACCACCCAATGCAACACGTCACGATATTCATGACAAACTTCATAGCTGCCTTCAGCCAAGAATAGAGATCACGTTTACGACAACCACTAAACAAAAAGCAGTAAAGAAAGCGCAACCAACATAGA] [+] EMBL AL932195 [ATCGCCCGAGGTTAGTCCGGTTTGGTTTGTGGTGTGGTGC TTCGGGCTTTGGCGATTTTGTGATTTTTCCCCCGACGTTACCGACGGGTGGTTGAGAAACAAATCCCTGTGCAGAGCGCAGGATTGTGTGTTGTGAAA AAATCAGTGAAGAAAGCATAGTTTGGGCAAAATGAAGCTTTTGATTGTACTCGCACTGGTTGCATCCGCTTACGCGTATCCGCAGCATGAACATCATGAACGTCACGAGCATCACGAAACAACCACGTACATTCCGATCCTAAAGTATGACAAACAACAGGGAGAAGATGGCAGTTATAGAACTATCTACCAGACGGGCAACAACATTGTTCACGAAGAGTCCGGCT ] [+] EMBL BX628755 [ CGGTTTGGTTTGTGGTGTGGTGCTTTCGGGCTTTGGCGATTTTGTGATTTTTCCCCCGACGTTACCGAC GGTGGTTGAGAAACAAATCCCTGTGCAGAGCGCAGGATTGTGTGTTGTGAAA AAATCAGTGAAGAAAGCATAGTTTGGGCAAAATGAAGCTTTTGATTGTACTCGCACTGGTTGCATCCGCTTACGCGTATCCGCAGCATGAACATCATGAACGTCACGAGCATCACGAAACAACCACGTACATTCCGATCCTAAAGTATGACAAACAACAGGGAGAAGATGGCAGTTATAGAACTATCTACCAGACGGGCAACAACATTGTTCACGAAGAGTCCGGCTACCTGAAGGACGCTTCGGAAGACCATCCGAATGGAATCTTGGTCCAACAGGGCGCCTACTCGTACGAAGCCCCCAACGGTGACGTCATCCAGGTGCAGTATACGGCCGACGAGAATGGGTTCCGTGTGCAGAGCGACAGCCTGCCGACGCCACCCCCTGTGCCGCCAGCAATCCAGGAAGGTCTGAAGGAGATCTACGAGGGCATCAAGCGCCGGGAGCAGGAAGCGAAGAACAATCCCAAGTACGCGGAGGACGAAGCCAGACGGGCTCAGCTAGACTACAACGGACAGTACTACAACCAGTAGAGCCGGTGTGGTGTACCCTCTTGTACGGTGACCAACCGCCAGGTGGCTTCGTTCAATG AAGAACT CCTTCGTCTAGCTTCGTTCGTAGCGTGCACGAGCTGTTAAGAAAGCGTTCTAGCGCTGTTCAGTAGATTTCCTC ] [+] EMBL BX610115 [ GTTTGTGGTGTGGTGCTTTCGGGCTTTGGCGATTTTGTGACTTTTTCCCC CGTTACCGAC GGTGGTTGAGAAACAAATCCCTGTGCAGAGCGCAGGATTGTGTGTTGTGAAAAAACTAAATCAGTGAAGAAAGAATAGTTTGGGCAAAATGAAGCTTTTGATTGTACTCGCACTGGTTGCATCCGCTTACGCGTATCCGCAGCATGAACATCATGAACGTCACGAGCATCACGAAACAACCACGTACATTCCGATCCTAAAGTATGACAAACAACAGGGAGAGGATGGCAGTTATAGAACTATCTACCAGACGGGCAACAACATTGTTCACGAAGAGTCCGGCTACCTGAAGGACGCTTCGGAAGACCATCCGAATGGAATCTTGGTCCAACAGGGCGCCTACTCGTACGAAGCCCCCAACGGTGACGTCATCCAGGTGCAGTATACGGCCGACGAGAATGGGTTCCGTGTGCAGAGCGACAGCCTGCCGACGCCACCCCTTGTGCCGCCAGCAATCCAGGAAGGTCTGAAGGAAATCTACGAAGGCATCAAACGCCGGGAGCAGGAAGCGAAGAACAATCCCAAGTACGCGGAGGACGAAGCCAGACGGGCTCAGCTAGACTACAACGGACAGTACTACAACCAGTAGAGCCGGTGTGGTGTACCCTCTTGTACGGTGACC ] [+] EMBL BX621160 [ CTTTCGGGCTTTGGCGATTTTGTGATTTTTCCCCCGACGTTACCGAC GGTGGTTGAGAAACAAATCCCTGTGCAGAGCGCAGGATTGTGTGTTGTGAAA AAATCAGTGAAGAAAGCATAGTTTGGGCAAAATGAAGCTTTTGATTGTACTCGCACTGGTTGCATCCGCTTACGCGTATCCGCAGCATGAACATCATGAACGTCACGAGCATCACGAAACAACCACGTACATTCCGATCCTAAAGTATGACAAACAACAGGGAGAAGATGGCAGTTATAGAACTATCTACCAGACGGGCAACAACATTGTTCACGAAGAGTCCGGCTACCTGAAGGACGCTTCGGAAGACCATCCGAATGGAATCTTGGTCCAACAGGGCGCCTACTCGTACGAAGCCCCCAACGGTGACGTCATCCAGGTGCAGTATACGGCCGACGAGAATGGGTTCCGTGTGCAGAGCGACAGCCTGCCGACGCCACCCCCTGTGCCGCCAGCAATCCAGGAAGGTCTGAAGGAGATCTACGAGGGCATCAAGCGCCGGGAGCAGGAAGCGAAGAACAATCCCAAGTACGCGGAGGACGAAGCCAGACGGGCTCAGCTAGACTACAACGGACAGTACTACAACCAGTAGAGCCGGTGTGGTGTACCCTCTTGTACGGTGACCAACCGNCAGGTGGCTTCGTTCAATGAAAGAACTCCCTTCGTCTAGCTTCGTTCGTAGCGT ] [+] EMBL BX627331 [ TTTGTGATTTTTCCCCCGACGTTACCGAC GGTGGTTGAGAAACAAATCCCTGTGCAGAGCGCAGGATTGTGTGTTGTGAAA AAATCAGTGAAGAAAGCATAGTTTGGGCAAAATGAAGCTTTTGATTGTACTCGCACTGGTTGCATCCGCTTACGCGTATCCGCAGCATGAACATCATGAACGTCACGAGCATCACGAAACAACCACGTACATTCCGATCCTAAAGTATGACAAACAACAGGGAGAAGATGGCAGTTATAGAACTATCTACCAGACGGGCAACAACATTGTTCACGAAGAGTCCGGCTACCTGAAGGACGCTTCGGAAGACCATCCGAATGGAATCTTGGTCCAACAGGGCGCCTACTCGTACGAAGCCCCCAACGGTGACGTCATCCAGGTGCAGTATACGGCCGACGAGAATGGGTTCCGTGTGCAGAGCGACAGCCTGCCGACGCCACCCCCTGTGCCGCCAGCAATCCAGGAAGGTCTGAAGGAGATCTACGAGGGCATCAAGCGCCGGGAGCAGGAAGCGAAGAACAATCCCAAGTACGCGGAGGACGAAGCCAGACGGGCTCAGCTAGACTACAACGGACAGTACTACNACCAGTAGAGCCGGTGTGGTGTACCCTCTTGTACGGNGACCAACCGNCAGGTGGCTTCGTTCAATG AAGAACT CCT ] [+] EMBL BX610451 [ TCCGATCCTAAAGTATGACAAACAACAGGGAGAGGATGGCTTTTATAGAACTATCTACCAGACGGGCAACAACATTGTTCACGAAGAGTCCGGCTACCTGAAGGACGCTTCGGAAGACCATCCGAATGGAATCTTGGTCCAACAGGGCGCCTACTCGTACGAAGCCCCCAACGGTGACGTCATCCAGGTGCAGTATACGGCCGACGAGAATGGGTTCCGTGTGCAGAGCGACAGCCTGCCGACGCCACCCCCTGTGCCGCCAGCAATCCAGGAAGGTCTGAAGGAAATCTACGAAGGCATCAAACGCCGGGAGCAGGAAGCGAAGAACAATCCCAAGTACGCGGAGGACGAAGCCAGACGGGCTCAGCTAGACTACAACGGACAGTACTACAACCAGTAGAGCCGGTGTGGTGTACCCTCTTGTACGGTGACCAACCGCCAGGTGGCTTCGTTCAATG AAGAACT CCTTCGCCTAGCTTCGTTCGTAGCGTGCACGAGCTGTTAAGAAAGCGTTCTAGCGCTGTTCAGTAGATTTCCTCTCGACGCATATTTATAATATTTAAGCCTCTCAAAGCGATGGCTACGCGAAGCGCGCATTGCTACCACCCAATGCAACACGTCACGATATTCATGACAAACTTCATAGCTGCCTTCAGCCAAGAATAGAGATCACGTTTACGACAACCACTAAACAAAAAGCAGTAAAGAAAGCGCAACCAACATAGA] consensusID : consensus_7811#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence [CAGATCNCCACGAGNTCTTTCTTCAAACAACAAGTGGCGTTCCGGTTTGGTTTGTGGTGTGGTGCTTTCGGGCTTTGGCGATTTTGTGATTTTTCCCCCGACGTTACCGACGGTGGTTGAGAAACAAATCCCTGTGCAGAGCGCAGGATTGTGTGTTGTGAAAAAATCAGTGAAGAAAGCATAGTTTGGGCAAAATGAAGCTTTTGATTGTACTCGCACTGGTTGCATCCGCTTACGCGTATCCGCAGCATGAACATCATGAACGTCACGAGCATCACGAAACAACCACGTACATTCCGATCCTAAAGTATGACAAACAACAGGGAGAAGATGGCAGTTATAGAACTATCTACCAGACGGGCAACAACATTGTTCACGAAGAGTCCGGCTACCTGAAGGACGCTTCGGAAGACCATCCGAATGGCAATCTTGGTCCAACAGGGCGCCTACTCGTACGAAGCCCCCAACGGTGACGTCATCCAGGTGCAGTATACCGGCCGACGAGAATGGGTTCCGTGTGCAGAGCGACAGCCTGCCGACGCCACCCCATGTGCCGCCAGCAA] [+] EMBL BX467311 [CAGATCNCCACGAGNTCTTTCTTCAAACAACAAGTGGCGTTCCGGTTTGGTTTGTGGTGTGGTGCTTTCGGGCTTTGGCGATTTTGTGATTTTTCCCCCGACGTTACCGACGGTGGTTGAGAAACAAATCCCTGTGCAGAGCGCAGGATTGTGTGTTGTGAAAAAATCAGTGAAGAAAGCATAGTTTGGGCAAAATGAAGCTTTTGATTGTACTCGCACTGGTTGCATCCGCTTACGCGTATCCGCAGCATGAACATCATGAACGTCACGAGCATCACGAAACAACCACGTACATTCCGATCCTAAAGTATGACAAACAACAGGGAGAAGATGGCAGTTATAGAACTATCTACCAGACGGGCAACAACATTGTTCACGAAGAGTCCGGCTACCTGAAGGACGCTTCGGAAGACCATCCGAATGGCAATCTTGGTCCAACAGGGCGCCTACTCGTACGAAGCCCCCAACGGTGACGTCATCCAGGTGCAGTATACCGGCCGACGAGAATGGGTTCCGTGTGCAGAGCGACAGCCTGCCGACGCCACCCCATGTGCCGCCAGCAA] consensusID : consensus_7811#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 512 fasta sequence [CACAATCGCCNAGGTTATTCAAACAACAAGTGGCGTTCGGCTTCGGTTTGTGGTGTGGTGCTTTCGGGCTTTGGCGATTTTGTAGATNTTTTCCCCCGTTACCGACGGTGGTTGAGAAACAAATCCCTGTGCAGAGCGCAGGATAAGTGTGTTGTGAAAAAATCAGTGAAGAAAGCATAGTTTGGGCAACAATGAAGCTTTTGATTGTACTCGCACTGGTTGCATCCGCTTATGCGTATCCGCAGCATGAACATCATGAACGCCACGAGCATCACGAAACAACCACGGTACATTCCGATCCTAAAGTATGACAAACAACAGGGAGAGGATGGCAGTTATAGAACTATCTACCAGACGGGCAACAACATTGTTCACGAAGAGTCCGGCTACCTGAAGGACGCTTCGGAAGACATCCGAATGGAATCTTGGTCCAACAGGGCGCCTACTCGGTACGAAGNCCCCGAACGGACGTCATCCAGGTGCAGTATACCGGCGACGAGAACTGGATTCCG] [+] EMBL AL933372 [CACAATCGCCNAGGTTATTCAAACAACAAGTGGCGTTCGGCTTCGGTTTGTGGTGTGGTGCTTTCGGGCTTTGGCGATTTTGTAGATNTTTTCCCCCGTTACCGACGGTGGTTGAGAAACAAATCCCTGTGCAGAGCGCAGGATAAGTGTGTTGTGAAAAAATCAGTGAAGAAAGCATAGTTTGGGCAACAATGAAGCTTTTGATTGTACTCGCACTGGTTGCATCCGCTTATGCGTATCCGCAGCATGAACATCATGAACGCCACGAGCATCACGAAACAACCACGGTACATTCCGATCCTAAAGTATGACAAACAACAGGGAGAGGATGGCAGTTATAGAACTATCTACCAGACGGGCAACAACATTGTTCACGAAGAGTCCGGCTACCTGAAGGACGCTTCGGAAGACATCCGAATGGAATCTTGGTCCAACAGGGCGCCTACTCGGTACGAAGNCCCCGAACGGACGTCATCCAGGTGCAGTATACCGGCGACGAGAACTGGATTCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7811#1 CAGATCNCCACGAGNTCTTTCTTCAAACAACAAGTGGCGTTCCGGTTTGGTTTGTGGTGT 60 consensus_7811#2 CACAATCGC-CNAGGT---TATTCAAACAACAAGTGGCGTTCGGCTTCGGTTTGTGGTGT 56 consensus_7811#0 -------------------------ATCGCCCGAGGTTAGTCCGGTTTGGTTTGTGGTGT 35 * * * * ** * ** ************ consensus_7811#1 GGTGCTTTCGGGCTTTGGCGATTTTGT-GATTTTTCCCCCGACGTTACCGACGGTGGTTG 119 consensus_7811#2 GGTGCTTTCGGGCTTTGGCGATTTTGTAGATNTTTTCCCC--CGTTACCGACGGTGGTTG 114 consensus_7811#0 GGTGCTTTCGGGCTTTGGCGATTTTGT-GATTTTTCCCCCGACGTTACCGACGGTGGTTG 94 *************************** *** *** **** ****************** consensus_7811#1 AGAAACAAATCCCTGTGCAGAGCGCAGGATT-GTGTGTTGTGAAAAAATCAGTGAAGAAA 178 consensus_7811#2 AGAAACAAATCCCTGTGCAGAGCGCAGGATAAGTGTGTTGTGAAAAAATCAGTGAAGAAA 174 consensus_7811#0 AGAAACAAATCCCTGTGCAGAGCGCAGGATT-GTGTGTTGTGAAAAAATCAGTGAAGAAA 153 ****************************** **************************** consensus_7811#1 GCATAGTTTGGGCAA-AATGAAGCTTTTGATTGTACTCGCACTGGTTGCATCCGCTTACG 237 consensus_7811#2 GCATAGTTTGGGCAACAATGAAGCTTTTGATTGTACTCGCACTGGTTGCATCCGCTTATG 234 consensus_7811#0 GCATAGTTTGGGCAA-AATGAAGCTTTTGATTGTACTCGCACTGGTTGCATCCGCTTACG 212 *************** ****************************************** * consensus_7811#1 CGTATCCGCAGCATGAACATCATGAACGTCACGAGCATCACGAAACAACCACG-TACATT 296 consensus_7811#2 CGTATCCGCAGCATGAACATCATGAACGCCACGAGCATCACGAAACAACCACGGTACATT 294 consensus_7811#0 CGTATCCGCAGCATGAACATCATGAACGTCACGAGCATCACGAAACAACCACG-TACATT 271 **************************** ************************ ****** consensus_7811#1 CCGATCCTAAAGTATGACAAACAACAGGGAGAAGATGGCAGTTATAGAACTATCTACCAG 356 consensus_7811#2 CCGATCCTAAAGTATGACAAACAACAGGGAGAGGATGGCAGTTATAGAACTATCTACCAG 354 consensus_7811#0 CCGATCCTAAAGTATGACAAACAACAGGGAGAAGATGGCAGTTATAGAACTATCTACCAG 331 ******************************** *************************** consensus_7811#1 ACGGGCAACAACATTGTTCACGAAGAGTCCGGCTACCTGAAGGACGCTTCGGAAGACCAT 416 consensus_7811#2 ACGGGCAACAACATTGTTCACGAAGAGTCCGGCTACCTGAAGGACGCTTCGGAAGAC-AT 413 consensus_7811#0 ACGGGCAACAACATTGTTCACGAAGAGTCCGGCTACCTGAAGGACGCTTCGGAAGACCAT 391 ********************************************************* ** consensus_7811#1 CCGAATGGCAATCTTGGTCCAACAGGGCGCCTACTCG-TACGAAGCCCCCAACGGTGACG 475 consensus_7811#2 CCGAATGG-AATCTTGGTCCAACAGGGCGCCTACTCGGTACGAAGNCCCCGAACG-GACG 471 consensus_7811#0 CCGAATGG-AATCTTGGTCCAACAGGGCGCCTACTCG-TACGAAGCCCCCAACGGTGACG 449 ******** **************************** ******* **** * * **** consensus_7811#1 TCATCCAGGTGCAGTATACCGGCCGACGAGAA-TGGGTTCCGTGTGCAGAGCGACAGCCT 534 consensus_7811#2 TCATCCAGGTGCAGTATACCGGC-GACGAGAACTGGATTCCG------------------ 512 consensus_7811#0 TCATCCAGGTGCAGTATAC-GGCCGACGAGAA-TGGGTTCCGTGTGCAGAGCGACAGCCT 507 ******************* *** ******** *** ***** consensus_7811#1 GCCGACGCCACCCCATGTGCCGCCAGCAA------------------------------- 563 consensus_7811#2 ------------------------------------------------------------ consensus_7811#0 GCCGACGCCACCCCCTGTGCCGCCAGCAATCCAGGAAGGTCTGAAGGAGATCTACGAGGG 567 consensus_7811#1 ------------------------------------------------------------ consensus_7811#2 ------------------------------------------------------------ consensus_7811#0 CATCAAGCGCCGGGAGCAGGAAGCGAAGAACAATCCCAAGTACGCGGAGGACGAAGCCAG 627 consensus_7811#1 ------------------------------------------------------------ consensus_7811#2 ------------------------------------------------------------ consensus_7811#0 ACGGGCTCAGCTAGACTACAACGGACAGTACTACAACCAGTAGAGCCGGTGTGGTGTACC 687 consensus_7811#1 ------------------------------------------------------------ consensus_7811#2 ------------------------------------------------------------ consensus_7811#0 CTCTTGTACGGTGACCAACCGCCAGGTGGCTTCGTTCAATGAAGAACTCCTTCGTCTAGC 747 consensus_7811#1 ------------------------------------------------------------ consensus_7811#2 ------------------------------------------------------------ consensus_7811#0 TTCGTTCGTAGCGTGCACGAGCTGTTAAGAAAGCGTTCTAGCGCTGTTCAGTAGATTTCC 807 consensus_7811#1 ------------------------------------------------------------ consensus_7811#2 ------------------------------------------------------------ consensus_7811#0 TCTCGACGCATATTTATAATATTTAAGCCTCTCAAAGCGATGGCTACGCGAAGCGCGCAT 867 consensus_7811#1 ------------------------------------------------------------ consensus_7811#2 ------------------------------------------------------------ consensus_7811#0 TGCTACCACCCAATGCAACACGTCACGATATTCATGACAAACTTCATAGCTGCCTTCAGC 927 consensus_7811#1 ------------------------------------------------------------ consensus_7811#2 ------------------------------------------------------------ consensus_7811#0 CAAGAATAGAGATCACGTTTACGACAACCACTAAACAAAAAGCAGTAAAGAAAGCGCAAC 987 consensus_7811#1 --------- consensus_7811#2 --------- consensus_7811#0 CAACATAGA 996 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||