These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7832#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1720 fasta sequence [CCGCCCACGCGTCCGGATTTGCTCAAGCAAAAATACTTTCTGCAGTCGTTTTGTATCAAGATATATTTTACTATTTTTTTCTATACATACGATCTGTGAAACGTGTTATACGTGCGTAGTTCGGTTAAGATAAACAAGTTTTGTAACTATAATTTGTTTTCGTACAGATCTTCTACTATCTGCTATTTGGCACCTTGTATCGGATTAGTTCCAGTTAATACACCCAAGGACACATTTCTTGTAATATCAATGAGTAAAATGACAAAAAACAAACTCAATTTGACGTTGCCACCTGGTTCCGTGGATGTTCCTGCTGGACAACAAACAACGCCAACACCCTCCTTTAAAACTCCATCAGGTACCGAATACGTGATTGGAAAACACAATCTTTTGGGAAAAGCTAAGAACAGCATCGATGCACTTACCGAAACATTGGAAGAACTTGAAATGGAAGAAAGTGCACGTAAACGCATTAAAGTGTTTCTCAGTCAAAAAGAAAAAATTGGCGAACTCAGTGATGAGGATTTAGAGAAACTAGGCGAGTTGGGTTCCGGAAATGGGGGAGTTGTAATGAAGGTACGTCACATTCCTACGCAGCTCATAATGGCACGCAAATTGATACACCTAGAAGTAAAACCTGCAATCAAAAAGCAGATTATACGAGAACTTAAGGTATTACACGAGTGTAATTTTCCGCACATAGTTGGATTCTATGGCGCATTCTACAGTGATGGAGAGATAAGCATATGTATGGAATACATGGATGGTGGCTCATTAGACCTAATTTTAAAACGAGCAGGAAGAATCCCGGAAGCTATTTTGGCAAAAATAACATCGGCAGTACTGAAAGGACTAAGCTATCTGAGAGATAAGCATGCCATTATGCATAGGGATGTTAAACCGAGCAACATTCTTGTAAATAGCAGTGGAGAGATAAAGATTTGTGATTTCGG-GTTTCCGGTCAGTTGATTGATTCAATGGCCAATTCTTTTGTAGGTACTCGAAGTTATATGTCGCCCGAGCGCTTACAAGGAACGCATTATTCTGTTCAATCTGACATATGGTCACTGGGACTCTCTTTAGTTGAAATGGCGATTGGAATGTATCCGATTCCTCCTCCAGATGCAAAAACATTAGATTTAATATTTCAGGAGCGTGGAGAAGACTGCTCTCCTGGACAAAGCATAATAGAACCTAAACCAATGGCTATTTTCGAACTACTGGACTACATTGTAAACGAACCTCCGCCTAAGTTAGAGCACAATTCTTTTACCGACCGTTTTAAAAATTTTGTTGATCTTTGTCTAAAGAAGAACCCCGAGGAGCGTGCAGATTTAAAAACACTCATGAATCACGAATGGATTAAAAACATTGAAACGGAGGACGTTGACTATTGCAGGATGGGTGTGTAAAACCATGGATCTTGCACCATCTACGCCCAAAAGAAACGCGTCACCATTTTCAAATTAATTCGTGCAAGGGTTANCGAGATTGGATGGGGGAGCTTANAATTGGATCGACGTATTGGAAGGTCATACCACGAACAANTTACTTTGACGTCCAATGGTTANACCGAAGAAATACTTCGGTATGTTATATAACATTGACATATTACTATCCATAGTGCCATAGTACCTAAAAAATTTTAATTNGTAGCGGGAAAGNACGACATCAAAACTGGTCTNCACCTGACCACNTAGTGTNCNCAAAGTNNNTGTTC] [+] EMBL BM606635 [CCGCCCACGCGTCCGGATTTGCTCAAGCAAAAATACTTTCTGCAGTCGTTTTGTATCAAGATATATTTTACTATTTTTTTCTATACATACGATCTGTGAAACGTGTTATACGTGCGTAGTTCGGTTAAGATAAACAAGTTTTGTAACTATAATTTGTTTTCGTACAGATCTTCTACTATCTGCTATTTGGCACCTTGTATCGGATTAGTTCCAGTTAATACACCCAAGGACACATTTCTTGTAATATCAATGAGTAAAATGACAAAAAACAAACTCAATTTGACGTTGCCACCTGGTTCCGTGGATGTTCCTGCTGGACAACAAACAACGCCAACACCCTCCTTTAAAACTCCATCAGGTACCGAATACGTGATTGGAAAACACAATCTTTTGGGAAAAGCTAAGAACAGCATCGATGCACTTACCGAAACATTGGAAGAACTTGAAATGGAAGAAAGTGCACGTAAACGCATTAAAGTGTTTCTCAGTCAAAAAGAAAAAATTGGCGAACTCAGTGATGAGGATTTAGAGAAACTAGGCGAGTTGGGTTCCGGAAATGGGGGAGTTGTAATGAAGGTACGTCACATTCCTACGCAGCTCATAATGGCACGCAAATTGATACACCTAGAAGTAAAACCTGCAATCAAAAAGCAGATTATACGAGAACTTAcgta ] [+] EMBL BM633807 [ ccGCAAAAATACTTTCTGCAGTCGTTTTGTATCAAGATATATTTTACTATTTTTTTCTATACATACGATCTGTGAAACGTGTTATACGTGCGTAGTTCGGTTAAGATAAACAAGTTTTGTAACTATAATTTGTTTTCGTACAGATCTTCTACTATCTGCTATTTGGCACCTTGTATCGGATTAGTTCCAGTTAATACACCCAAGGACACATTTCTTGTAATATCAATGAGTAAAATGACAAAAAACAAACTCAATTTGACGTTGCCACCTGGTTCCGTGGATGTTCCTGCTGGACAACAAACAACGCCAACACCCTCCTTTAAAACTCCATCAGGTACCGAATACGTGATTGGAAAACACAATCTTTTGGGAAAAGCTAAGAACAGCATCGATGCACTTACCGAAACATTGGAAGAACTTGAAATGGAAGAAAGTGCACGTAAACGCATTAAAGTGTTTCTCAGTCAAAAAGAAAAAATTGGCGAACTCAGTGATGAGGATTTAGAGAAACTAGGCGAGTTGGGTTCCGGAAATGGGGGAGTTGTAATGAAGGTACGTCACATTCCTACGCAGCTCATAATGGCACGCAAATTGATACACCTAGAAGTAAAACCTGCAATCAAAAAGCAGATTATACGAGAACTTAAGGTATTACACGAGTGTAATTTTCCGCACATAGTTGGATTCTATGGCGCATTCTAC ] [+] EMBL BX621627 [ GCAATCAAAAAGCAGATTATACGAGAACTTAAGGTATTACACGAGTGTAATTTTCCGCACATAGTTGGATTCTATGGCGCATTCTACAGTGATGGAGAGATAAGCATATGTATGGAATACATGGATGGTGGCTCATTAGACCTAATTTTAAAACGAGCAGGAAGAATCCCGGAAGCTATTTTGGCAAAAATAACATCGGCAGTACTGAAAGGACTAAGCTATCTGAGAGATAAGCATGCCATTATGCATAGGGATGTTAAACCGAGCAACATTCTTGTAAATAGCAGTGGAGAGATAAAGATTTGTGATTTCGG GTTTCCGGTCAGTTGATTGATTCAATGGCCAATTCTTTTGTAGGTACTCGAAGTTATATGTCGCCCGAGCGCTTACAAGGAACGCATTATTCTGTTCAATCTGACATATGGTCACTGGGACTCTCTTTAGTTGAAATGGCGATTGGAATGTATCCGATTCCTCCTCCAGATGCAAAAACATTAGATTTAATATTTCAGGAGCGTGGAGAAGACTGCTCTCCTGGACAAAGCATAATAGAACCTAAACCAATGGCTATTTTCGAACTACTGGACTACATTGTAAACGAACCTCCGCCTAAGTTAGAGCACAA ] [+] EMBL AL932469 [ atgcccgaGGTAATACTGAAAGGACTAAGCTATCTGAGAGATAAGCATGCCATTATGCATAGGGATGTTAAACCGAGCAACATTCTTGTAAATAGCAGTGGAGAGATAAAGATTTGTGATTTCGGCGTTTCCGGTCAGTTGATTGATTCAATGGCCAATTCTTTTGTAGGTACTCGAAGTTATATGTCGCCCGAGCGCTTACAAGGAACGCATTATTCTGTTCAATCTGACATATGGTCACTGGGACTCTCTTTAGTTGAAATGGCGATTGGAATGTATCCGATTCCTCCTCCAGATGCAAAAACATTAGATTTAATATTTCAGGAGCGTGGAGAAGACTGCTCTCCTGGACAAAGCATAATAGAACCTAAACCAATGGCTATTTTCGAACTACTGGACTACATTGTAAACGAACCTCCGCCTAAGTTAGAGCACAATTCTTTTACCGACCGTTTTAAAAATTTTGTTGATCTTTGTCTAAAGAAGAACCCCGAGGAGCGTGCAGATTTAAAAACACTCATGAATCACGAATGGATTAAAAACATTGAAACGGAGGACGTTGACTATTGCAGGATGGGTGTGTAAAACCATGGATCTTGCACCATCTACGCCCAAAAGAAACGCGTCACCATTTTCAAATTAATTCGTGCAAGGGTTANCGAGATTGGATGGGGGAGCTTANAATTGGATCGACGTATTGGAAGGTCATACCACGAACAANTTACTTTGACGTCCAATGGTTANACCGAAGAAATACTTCGGTATGTTATATAACATTGACATATTACTATCCATAGTGCCATAGTACCTAAAAAATTTTAATTNGTAGCGGGAAAGNACGACATCAAAACTGGTCTNCACCTGACCACNTAGTGTNCNCAAAGTNNNTGTTC] consensusID : consensus_7832#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 667 fasta sequence [CCGGTCAGTTTTCCAAATTCATAGAACAGCGAAAATCGAAAAATCTTTGCAGATTTGCTCAAGCAAAAATACTTTCTGCAGTCGTTTTGTATCAAGATATATTTTACTATTTTTTTCTATACATACGATCTGTGAAACGTGTTATACGTGCGTAGTTCGGTTAAGATAAACAAGTTTTGTAACTATAATTTGTTTTCGTACAGATCTTCTACTATCTGCTATTTGGCACCTTGTATCGGATTAGTTCCAGTTAATACACCCAAGGACACATTTCTTGTAATATCAATGAGTAAAATGACAAAAAACAAACTCAATTTGACGTTGCCACCTGGTTCCGTGGATGTTCCTGCTGGACAACAAACAACGCCAACACCCTCCTTTAAAACTCCATCAGGTACCGAATACGTGATTGGAAAACACAATCTTTTGGGAAAAGCTAAGAACAGCATCGATGCACTTACCGAAACATTGGAAGAACTTGAAATGGAAGAAAGTGCACGTAAACGCATTAAAGTGTTTCTCAGTCAAAAAGAAAAAATTGGCGAACTCAGTGATGAGGATTTAGAGAAACTAGGCGAGTTGGGTTCCGGAAATGGGGGAGTTGTAATGAAGGGACGTCACATTCCTACGCAGCTCATAATGGCACGCAAATTGATACACCTAGAAG] [+] EMBL BM618292 [CCGGTCAGTTTTCCAAATTCATAGAACAGCGAAAATCGAAAAATCTTTGCAGATTTGCTCAAGCAAAAATACTTTCTGCAGTCGTTTTGTATCAAGATATATTTTACTATTTTTTTCTATACATACGATCTGTGAAACGTGTTATACGTGCGTAGTTCGGTTAAGATAAACAAGTTTTGTAACTATAATTTGTTTTCGTACAGATCTTCTACTATCTGCTATTTGGCACCTTGTATCGGATTAGTTCCAGTTAATACACCCAAGGACACATTTCTTGTAATATCAATGAGTAAAATGACAAAAAACAAACTCAATTTGACGTTGCCACCTGGTTCCGTGGATGTTCCTGCTGGACAACAAACAACGCCAACACCCTCCTTTAAAACTCCATCAGGTACCGAATACGTGATTGGAAAACACAATCTTTTGGGAAAAGCTAAGAACAGCATCGATGCACTTACCGAAACATTGGAAGAACT ] [+] EMBL BM643512 [ ccgGAAAATCGAAAAATCTTTGCAGATTTGCTCAAGCAAAAATACTTTCTGCAGTCGTTTTGTATCAAGATATATTTTACTATTTTTTTCTATACATACGATCTGTGAAACGTGTTATACGTGCGTAGTTCGGTTAAGATAAACAAGTTTTGTAACTATAATTTGTTTTCGTACAGATCTTCTACTATCTGCTATTTGGCACCTTGTATCGGATTAGTTCCAGTTAATACACCCAAGGACACATTTCTTGTAATATCAATGAGTAAAATGACAAAAAACAAACTCAATTTGACGTTGCCACCTGGTTCCGTGGATGTTCCTGCTGGACAACAAACAACGCCAACACCCTCCTTTAAAACTCCATCAGGTACCGAATACGTGATTGGAAAACACAATCTTTTGGGAAAAGCTAAGAACAGCATCGATGCACTTACCGAAACATTGGAAGAACTTGAAATGGAAGAAAGTGCACGTAAACGCATTAAAGTGTTTCTCAGTCAAAAAGAAAAAATTGGCGAACTCAGTGATGAGGATTTAGAGAAACTAGGCGAGTTGGGTTCCGGAAATGGGGGAGTTGTAATGAAGG ] [+] EMBL BX606893 [ AAAATCGAAAAATCTTTGCAGATTTGCTCAAGCAAAAATACTTTCTGCAGTCGTTTTGTATCAAGATATATTTTACTATTTTTTTCTATACATACGATCTGTGAAACGTGTTATACGTGCGTAGTTCGGTTAAGATAAACAAGTTTTGTAACTATAATTTGTTTTCGTGCAGATCTTCTACTATCTGCTATTTGGCACCTTGTATCGGATTAGTTCCAGTTAATACACCCAAGGACACATTTCTTGTAATATCAATGAGTAAAATGACAAAAAACAAACTCAATTTGACGTTGCCACCTGGTTCCGTGGATGTTCCTGCTGGGCAACAAACAACGCCAACACCCTCCTTTAAAACTCCATCAGGTACCGAATACGTGATTGGAAAACACAATCTTTTGGGAAAAGCTAAGAACAGCATCGA ] [+] EMBL BM656460 [ ccgCGAAAAATCTTTGCAGATTTGCTCAAGCAAAAATACTTTCTGCAGTCGTTTTGTATCAAGATATATTTTACTATTTTTTTCTATACATACGATCTGTGAAACGTGTTATACGTGCGTAGTTCGGTTAAGATAAACAAGTTTTGTAACTATAATTTGTTTTCGTACAGATCTTCTACTATCTGCTATTTGGCACCTTGTATCGGATTAGTTCCAGTTAATACACCCAAGGACACATTTCTTGTAATATCAATGAGTAAAATGACAAAAAACAAACTCAATTTGACGTTGCCACCTGGTTCCGTGGATGTTCCTGCTGGACAACAAACAACGCCAACACCCTCCTTTAAAACTCCATCAGGTACCGAATACGTGATTGGAAAACACAATCTTTTGGGAAAAGCTAAGAACAGCATCGATGCACTTACCGAAACATTGGAAGAACTTGAAATGGAAGAAAGTGCACGTAAACGCATTAAAGTGTTTCTCAGTCAAAAAGAAAAAATTGGCGAACTCAGTGATGAGGATTTAGAGAAACTAGGCGAGTTGGGTTCCGGAAATGGGGGAGTTGTAATGAAGGGACGTCACATTCCTACGCAGCTCATAATGGCACGCAAATTGATACACCTAGAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7832#0 ------------------------------------CCGCCCACGCGTCCGGATTTGCTC 24 consensus_7832#1 CCGGTCAGTTTTCCAAATTCATAGAACAGCGAAAATCGAAAAATCTTTGCAGATTTGCTC 60 * * * * ********* consensus_7832#0 AAGCAAAAATACTTTCTGCAGTCGTTTTGTATCAAGATATATTTTACTATTTTTTTCTAT 84 consensus_7832#1 AAGCAAAAATACTTTCTGCAGTCGTTTTGTATCAAGATATATTTTACTATTTTTTTCTAT 120 ************************************************************ consensus_7832#0 ACATACGATCTGTGAAACGTGTTATACGTGCGTAGTTCGGTTAAGATAAACAAGTTTTGT 144 consensus_7832#1 ACATACGATCTGTGAAACGTGTTATACGTGCGTAGTTCGGTTAAGATAAACAAGTTTTGT 180 ************************************************************ consensus_7832#0 AACTATAATTTGTTTTCGTACAGATCTTCTACTATCTGCTATTTGGCACCTTGTATCGGA 204 consensus_7832#1 AACTATAATTTGTTTTCGTACAGATCTTCTACTATCTGCTATTTGGCACCTTGTATCGGA 240 ************************************************************ consensus_7832#0 TTAGTTCCAGTTAATACACCCAAGGACACATTTCTTGTAATATCAATGAGTAAAATGACA 264 consensus_7832#1 TTAGTTCCAGTTAATACACCCAAGGACACATTTCTTGTAATATCAATGAGTAAAATGACA 300 ************************************************************ consensus_7832#0 AAAAACAAACTCAATTTGACGTTGCCACCTGGTTCCGTGGATGTTCCTGCTGGACAACAA 324 consensus_7832#1 AAAAACAAACTCAATTTGACGTTGCCACCTGGTTCCGTGGATGTTCCTGCTGGACAACAA 360 ************************************************************ consensus_7832#0 ACAACGCCAACACCCTCCTTTAAAACTCCATCAGGTACCGAATACGTGATTGGAAAACAC 384 consensus_7832#1 ACAACGCCAACACCCTCCTTTAAAACTCCATCAGGTACCGAATACGTGATTGGAAAACAC 420 ************************************************************ consensus_7832#0 AATCTTTTGGGAAAAGCTAAGAACAGCATCGATGCACTTACCGAAACATTGGAAGAACTT 444 consensus_7832#1 AATCTTTTGGGAAAAGCTAAGAACAGCATCGATGCACTTACCGAAACATTGGAAGAACTT 480 ************************************************************ consensus_7832#0 GAAATGGAAGAAAGTGCACGTAAACGCATTAAAGTGTTTCTCAGTCAAAAAGAAAAAATT 504 consensus_7832#1 GAAATGGAAGAAAGTGCACGTAAACGCATTAAAGTGTTTCTCAGTCAAAAAGAAAAAATT 540 ************************************************************ consensus_7832#0 GGCGAACTCAGTGATGAGGATTTAGAGAAACTAGGCGAGTTGGGTTCCGGAAATGGGGGA 564 consensus_7832#1 GGCGAACTCAGTGATGAGGATTTAGAGAAACTAGGCGAGTTGGGTTCCGGAAATGGGGGA 600 ************************************************************ consensus_7832#0 GTTGTAATGAAGGTACGTCACATTCCTACGCAGCTCATAATGGCACGCAAATTGATACAC 624 consensus_7832#1 GTTGTAATGAAGGGACGTCACATTCCTACGCAGCTCATAATGGCACGCAAATTGATACAC 660 ************* ********************************************** consensus_7832#0 CTAGAAGTAAAACCTGCAATCAAAAAGCAGATTATACGAGAACTTAAGGTATTACACGAG 684 consensus_7832#1 CTAGAAG----------------------------------------------------- 667 ******* consensus_7832#0 TGTAATTTTCCGCACATAGTTGGATTCTATGGCGCATTCTACAGTGATGGAGAGATAAGC 744 consensus_7832#1 ------------------------------------------------------------ consensus_7832#0 ATATGTATGGAATACATGGATGGTGGCTCATTAGACCTAATTTTAAAACGAGCAGGAAGA 804 consensus_7832#1 ------------------------------------------------------------ consensus_7832#0 ATCCCGGAAGCTATTTTGGCAAAAATAACATCGGCAGTACTGAAAGGACTAAGCTATCTG 864 consensus_7832#1 ------------------------------------------------------------ consensus_7832#0 AGAGATAAGCATGCCATTATGCATAGGGATGTTAAACCGAGCAACATTCTTGTAAATAGC 924 consensus_7832#1 ------------------------------------------------------------ consensus_7832#0 AGTGGAGAGATAAAGATTTGTGATTTCGGGTTTCCGGTCAGTTGATTGATTCAATGGCCA 984 consensus_7832#1 ------------------------------------------------------------ consensus_7832#0 ATTCTTTTGTAGGTACTCGAAGTTATATGTCGCCCGAGCGCTTACAAGGAACGCATTATT 1044 consensus_7832#1 ------------------------------------------------------------ consensus_7832#0 CTGTTCAATCTGACATATGGTCACTGGGACTCTCTTTAGTTGAAATGGCGATTGGAATGT 1104 consensus_7832#1 ------------------------------------------------------------ consensus_7832#0 ATCCGATTCCTCCTCCAGATGCAAAAACATTAGATTTAATATTTCAGGAGCGTGGAGAAG 1164 consensus_7832#1 ------------------------------------------------------------ consensus_7832#0 ACTGCTCTCCTGGACAAAGCATAATAGAACCTAAACCAATGGCTATTTTCGAACTACTGG 1224 consensus_7832#1 ------------------------------------------------------------ consensus_7832#0 ACTACATTGTAAACGAACCTCCGCCTAAGTTAGAGCACAATTCTTTTACCGACCGTTTTA 1284 consensus_7832#1 ------------------------------------------------------------ consensus_7832#0 AAAATTTTGTTGATCTTTGTCTAAAGAAGAACCCCGAGGAGCGTGCAGATTTAAAAACAC 1344 consensus_7832#1 ------------------------------------------------------------ consensus_7832#0 TCATGAATCACGAATGGATTAAAAACATTGAAACGGAGGACGTTGACTATTGCAGGATGG 1404 consensus_7832#1 ------------------------------------------------------------ consensus_7832#0 GTGTGTAAAACCATGGATCTTGCACCATCTACGCCCAAAAGAAACGCGTCACCATTTTCA 1464 consensus_7832#1 ------------------------------------------------------------ consensus_7832#0 AATTAATTCGTGCAAGGGTTANCGAGATTGGATGGGGGAGCTTANAATTGGATCGACGTA 1524 consensus_7832#1 ------------------------------------------------------------ consensus_7832#0 TTGGAAGGTCATACCACGAACAANTTACTTTGACGTCCAATGGTTANACCGAAGAAATAC 1584 consensus_7832#1 ------------------------------------------------------------ consensus_7832#0 TTCGGTATGTTATATAACATTGACATATTACTATCCATAGTGCCATAGTACCTAAAAAAT 1644 consensus_7832#1 ------------------------------------------------------------ consensus_7832#0 TTTAATTNGTAGCGGGAAAGNACGACATCAAAACTGGTCTNCACCTGACCACNTAGTGTN 1704 consensus_7832#1 ------------------------------------------------------------ consensus_7832#0 CNCAAAGTNNNTGTTC 1720 consensus_7832#1 ---------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||