These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7835#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 802 fasta sequence [CCGCCCACGCGTCCGGAACAAGCAACATCCTCTCGTTACATGAAAAT---CAGCAAACTCGCATCAAACGGCGAAACAACAAGAGACACAGAGAGAGAGAGAGAGAGATAGACAGTGTGCGAGATACAGAGAGTTTTATTAGTAAGGAAAGCGTTTAAAGCAGCACGCAAAGTAGCAAAGAGAGACGTGTTAAAATCCGATTTTTTAACAAAAGCTCAAGTGACACTGCTGAATGGGAAAGAGAAACGGCAAAATAGTGTATTTGTGCGACAAAGTGAGTGTCTGAAAATTCCGGCCCTGCCATAAGTCAACCTGCA------ACACACACACAACCCCAAGTTTGAAAAAGGAAATGAGGAAACATTGATTTTTCCCGTTTTCTTCGCATCCAATTTGCAAAGTAATAATACGGGGCTTTTGCTAGTTCAGCGGTTGACAGGTTCTCTGCTTCATGTTTGACGTTTGTCAGGTACAGGGACACAACACGGTACAGCGGCGAAAGCGCAAGCGAAGTGGGCTGGAAAAATCGTTGTGACACCCCGTTTCAACCCAACCCCGTGTGAAGGCGTAAGTGTGTATTGTGCGTGCGTGTTCGAGGCAAAAAACCGACGACGACGACGACGACACGATCGATCCAAGTGATAATCAAGTGCTGTGAAATTACAAATAATACATTTTAATCAAGG----AAAGTTAAGG-CCCAGAAAGTACAAGACACACACACGCTGCTCACTACAAGCAGCAGAGCACAAGCTGGACAGTTCAAATAGCATTACTAAGGCGAGAAAAGGAGCACAAACCGATTTTCGGG] [+] EMBL BM591287 [CCGCCCACGCGTCCGGAACAAGCAACATCCTCTCGTTACATGAAAAT CAGCAAACTCGCATCAAACGGCGAAACAACAAGAGACACAGAGAGAGAGAGAGAGAGATAGACAGTGTGCGAGATACAGAGAGTTTTATTAGTAAGGAAAGCGTTTAAAGCAGCACGCAAAGTAGCAAAGAGAGACGTGTTAAAATCCGATTTTTTAACAAAAGCTCAAGTGACACTGCTGAATGGGAAAGAGAAACGGCAAAATAGTGTATTTGTGCGACAAAGTGAGTGTCTGAAAATTCCGGCCCTGCCATAAGTCAACCTGCA ACACACACACAACCCCAAGTTTGAAAAAGGAAATGAGGAAACATTGATTTTTCCCGTTTTCTTCGCATCCAATTTGCAAAGTAATAATACGGGGCTTTTGCTAGTTCAGCGGTTGACAGGTTCTCTGCTTCATGTTTGACGTTTGTCAGGTACAGGGACACAACACGGTACAGCGGCGAAAGCGCAAGCGAAGTGGGCTGGAAAAATCGTTGTGACACCCCGTTTCAACCCAACCCCGTGTGAAGGCGTAAGTGTGTATTGTGCGTGCGTGTTCGAGGCAAAAAACCGACGACGACGACGACGACACGATCGATCCAAGTGATAATCAAGTGCTGTGAAATTACAAATAATA ] [+] EMBL BM618067 [ ccgGCAACATCCTCTCGTTACATGAAAAT CAGCAAACTCGCATCAAACGGCGAAACAACAAGAGACACAGAGAGAGAGAGAGAGAGATAGACAGTGTGCGAGATACAGAGAGTTTTATTAGTAAGGAAAGCGTTTAAAGCAGCACGCAAAGTAGCAAAGAGAGACGTGTTAAAATCCGATTTTTTAACAAAAGCTCAAGTGACACTGCTGAATGGGAAAGAGAAACGGCAAAATAGTGTATTTGTGCGACAAAGTGAGTGTCTGAAAATTCCGGCCCTGCCATAAGTCAACCTGCA ACACACACACAACCCCAAGTTTGAAAAAGGAAATGAGGAAACATTGATTTTTCCCGTTTTCTTCGCATCCAA TTGCAAAGTAATAATACGGGGCTTTTGCTAGTTCAGCGGTTGACAGGTTCTCTGCTTCATGTTTGACGTTTGTCAGGTACAGGGACACAACACGGTACAGCGGCGAAAGCGCAAGCGAAGTGGGCTGGAAAAATCGTTGTGACACCCCGTTTCAACCCAACCCCGTGTGAAGGCGTAAGTGTGTATTGTGCGTGCGTGTTCGAGGCAAAAAACCGACGACGACGACGACGACACGATCGATCCAAGTGATAATCAAGTGCTGTGAAATTACAAATAATACATTTTAATCAAGG AAAGTTAAGG CCCAGAAAGTACAAGACACACACACGCTGCTCACTACAAGCAGCAGAGCACAAGCTGGACAGTTCAAATAGCATTACTAAGGCGAGAAAAGGAGCACAAACCGATTTTCGGG] [+] EMBL BM599780 [ ccgCTCTCGTTACATGAAAATCAGCAGCAAACTCGCATCAAACGGCGA AACAAGAGACACAGAGAGAGAGAGAGAGAGATAGACAGTGTGCGAGATACAGAGAGTTTTATTAGTAAGGAAAGCGTTTAAAGCAGCACGCAAAGTAGCAAAGAGAGACGTGTTAAAATCCGATTTTTTAACAAAAGCTCAAGTGACACTGCTGAATGGGAAAGAGAAACGACAAAAAAGTGTTTTTGTGCGACGAAGTGAGTGTCTGAAAATTCCGGCCCTGCCATAAGTCAACCTGCAACACACACACACACACAACCCCAAGTTTGAAAAAGGAAATGAGGAAACATTGATTTTTCCCGTTTTCTTCGCATCCAATTTGCAAAGTAATAATACGGGGCTTTTGCTAGTTCAGCGGTTGACAGGTTCTCTGCTTCATGTTTGACGTTTGTCAGGTACAGGGACACAACACGGTACAGCGGCGAAAGCGCAAGCGAAGTGGGCTGGAAAAATCGTTGTGACACCCCGTTTCAACCCAACCCCGTGTGAAGGCGTAAGTGTGTATTGTGCGTGCGTGTTCGAGGCAAAAAACCGACGACGACGACGACGACACGATCGATCCAAGTGATAATCAAGTGCTGTGAAATTACAAATAATACATTTTAATCAAGGAAGAAAAGTTAAGGTCCCAGAAAGTACAAGA ] consensusID : consensus_7835#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 692 fasta sequence [CCGAATTGAACAAGCAACATCCTCTCGTTACATGAAAATCAGCAAACTCGCATCAAACGGCGAAACAACAAGAGACACAGAGAGAGAGAGAGAGAGAGATA--GACAGTGTGCGAGATACAGAGAGTTTTATTAGTAAGGAAAGCGTTTAAAGCAGCACGCAAAGTAGCAAAGAGAGACGTGTTAAAATCCGATTTTTTAACAAAAGCTCAAGTGACACTGCTGAATGGGAAAGAGAAACGACAAAAAAGTGTATTTGTGCGACGAAGTGAGTGTCTGAAAATTCCGGCCCTGCCATAAGTCAACCTGCAGCACACACACACAC-------C-CAACCCCAAGTTTGGAAAGGAAATGAGGAAACATTGATTTTTCCCGTTTTCTTCGCATCCAATTTGCAAAGTAATAATACGGGGCTTTTGCTAGTTCAGCGGTTGACAGGTTCTCTGCTTCATGTTTGACGTTTGTCAGGTACAGGGACACAACACGGTACAGCGGCGAAAGCGCAAGCGAAGTGGGCTGGAAAAATCGTTGTGACACCCCGTTTCAACCCAACCCCGTGTGAAGGCGTAAGTGTGTATTGTGCGTGCGTGTTCGAGGC-AAAAAACCGACGACGACGACACGATCGATCCAAGTGATAATCAAGTGCTGTGAAATTACAAAGAATACATTTTAATCGAAGAAGGAAAAGAAAAGTAAGA] [+] EMBL BM615748 [CCGAATTGAACAAGCAACATCCTCTCGTTACATGAAAATCAGCAAACTCGCATCAAACGGCGAAACAACAAGAGACACAGAGAGAGAGAGAGAGAGAGATA GACAGTGTGCGAGATACAGAGAGTTTTATTAGTAAGGAAAGCGTTTAAAGCAGCACGCAAAGTAGCAAAGAGAGACGTGTTAAAATCCGATTTTTTAACAAAAGCTCAAGTGACACTGCTGAATGGGAAAGAGAAACGACAAAAAAGTGTATTTGTGCGACGAAGTGAGTGTCTGAAAATTCCGGCCCTGCCATAAGTCAACCTGCAGCACACACACACAC C CAACCCCAAGTTTGGAAAGGAAATGAGGAAACATTGATTTTTCCCGTTTTCTTCGCATCCAATTTGCAAAGTAATAATACGGGGCTTTTGCTAGTTCAGCGGTTGACAGGTTCTCTGCTTCATGTTTGACGTTTGTCAGGTACAGGGACACAACACGGTACAGCGGCGAAAGCGCAAGCGAAGTGGGCTGGAAAAATCGTTGTGACACCCCGTTTCAACCCAACCCCGTGTGAAGGCGTAAGTGTGTATTGTGCGTGCGTGTTCGAGGC AAAAAACCGACGACGACGACACGATCGATCCAAGTGATAATCAAGTGCTGTGAAATTACAAAGAATACATTTTAATCGAAGAAGGAAAAGAAAAGTAAGA] [+] EMBL BM633895 [CCGAATTGAACAAGCAACATCCTCTCGTTACATGAAAATCAGCAAACTCGCATCAAACGGCGAAACAACAAGAGACAC AGAGAGAGAGAGAGAGAGATA GACAGTGTGCGAGATACAGAGAGTTTTATTAGTAAGGAAAGCGTTTAAAGCAGCACGCAAAGTAGCAAAGAGAGACGTGTTAAAATCCGATTTTTTAACAAAAGCTCAAGTGACACTGCTGAATGGGAAAGAGAAACGACAAAAAAGTGTATTTGTGCGACGAAGTGAGTGTCTGAAAATTCCGGCCCTGCCATAAGTCAACCTGCAGCACACACACACAC C CAACCCCAAGTTTGGAAAGGAAATGAGGAAACATTGATTTTTCCCGTTTTCTTCGCATCCAATTTGCAAAGTAATAATACGGGGCTTTTGCTAGTTCAGCGGTTGACAGGTTCTCTGCTTCATGTTTGACGTTTGTCAGGTACAGGGACACAACACGGTACAGCGGCGAAAGCGCAAGCGAAGTGGGCTGGAAAAATCGTTGTGACACCCCGTTTCAACCCAACCCCGTGTGAAGGCGTAAGTGTGTATTGTGCGTGCGTGTTCGAGGC AAAAAACCGACGACGACGACACGATCGATCCAAGTGATAATCAAGTGCTGTGAAATTACAAATAATACATT ] [+] EMBL BM619820 [CCGAATTGAACAAGCAACATCCTCTCGTTACATGAAAATCAGCAAACTCGCATCAAACGGCGAAACAACAAGAGACACAGAGAGAGAGAGAGAGAGAGATA GACAGTGTGCGAGATACAGAGAGTTTTATTAGTAAGGAAAGCGTTTAAAGCAGCACGCAAAGTAGCAAAGAGAGACGTGTTAAAATCCGATTTTTTAACAAAAGCTCAAGTGACACTGCTGAATGGGAAAGAGAAACGACAAAAAAGTGTATTTGTGCGACGAAGTGAGTGTCTGAAAATTCCGGCCCTGCCATAAGTCAACCTGCAGCACACACACACAC C CAACCCCAAGTTTGGAAAGGAAATGAGGAAACATTGATTTTTCCCGTTTTCTTCGCATCCAATTTGCAAAGTAATAATACGGGGCTTTTGCTAGTTCAGCGGTTGACAGGTTCTCTGCTTCATGTTTGACGTTTGTCAGGTACAGGGACACAACACGGTACAGCGGCGAAAGCGCAAGCGAAGTGGGCTGGAAAAATCGTTGTGACACCCCGTTTCAACCCAACCCCGTGTGAAGGCGTAAGTGTGTATTGTGCGTGCGTGTTCGAGGCAAAAAAACCGACGACGACGAC ] [+] EMBL BM580505 [ ccgGAACAAGCAACATCCTCTCGTTACATGAAAATCAGCAAACTCGCATCAAACGGCGAAACAACAAGAGACAGAGAGAGAGAGAGAAAGAGAGATATTGACAGTGAGCGAGATACAGAGAGTTTTATTAGTAAGGAAAGCGTTTAAAGCAGCACGCAAAGTAGCAA AGAGACGTGTTAAAATCAGATTTTTTAACAAAAGCTCAAGTGACACTGCTGAATGGGAAAAAGAAACGTAAAAAAAGTGTTTTTGTGCGACAAAGTGAGTGTCTGAAAATTCCGGCCCTGCCATAAGTCAACCTGCAGCACACACACACACACACACACACAACCCCAAGTTTGGAAAGGAAATGAGGAAACATTGATTTTTCCCGTTTTCTTCGCATCCAATTTGCAAAGTAATAATACGGGGCTTTTGCTAGTTCAGCGGTTGACAGGTTCTCTGCTTCATGTTTGACGTTTGTCAGGTACAGGGACACAACACGGTACAGCGGCGAAAGCGCAAGCGAAGTGGGCTGGAAAAATCGTTGTGACACCCCGTTTCAACCCAACCCCGTGTGAAGGCGTAAGTGTGTATTGTGCGTGCGTG ] [+] EMBL BX612609 [ GAGAGTTTTATTAGTAAGGAAAGCGTTTAAAGCAGCACGCAAAGTAGCAAAGAGAGACGGGTTAAAATCCGATTTTTTAACAAAAGCTCAAGGGACACTGCTGAATGGGAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7835#0 CCGCCCACGCGTCCGGAACAAGCAACATCCTCTCGTTACATGAAAATCAGCAAACTCGCA 60 consensus_7835#1 --------CCGAATTGAACAAGCAACATCCTCTCGTTACATGAAAATCAGCAAACTCGCA 52 ** ********************************************* consensus_7835#0 TCAAACGGCGAAACAACAAGAGACACAGAGAGAGAGAGAGAGAGA--TAGACAGTGTGCG 118 consensus_7835#1 TCAAACGGCGAAACAACAAGAGACACAGAGAGAGAGAGAGAGAGAGATAGACAGTGTGCG 112 ********************************************* ************* consensus_7835#0 AGATACAGAGAGTTTTATTAGTAAGGAAAGCGTTTAAAGCAGCACGCAAAGTAGCAAAGA 178 consensus_7835#1 AGATACAGAGAGTTTTATTAGTAAGGAAAGCGTTTAAAGCAGCACGCAAAGTAGCAAAGA 172 ************************************************************ consensus_7835#0 GAGACGTGTTAAAATCCGATTTTTTAACAAAAGCTCAAGTGACACTGCTGAATGGGAAAG 238 consensus_7835#1 GAGACGTGTTAAAATCCGATTTTTTAACAAAAGCTCAAGTGACACTGCTGAATGGGAAAG 232 ************************************************************ consensus_7835#0 AGAAACGGCAAAATAGTGTATTTGTGCGACAAAGTGAGTGTCTGAAAATTCCGGCCCTGC 298 consensus_7835#1 AGAAACGACAAAAAAGTGTATTTGTGCGACGAAGTGAGTGTCTGAAAATTCCGGCCCTGC 292 ******* ***** **************** ***************************** consensus_7835#0 CATAAGTCAACCTGCAACACACACACA------ACCCCAAGTTTGAAAAAGGAAATGAGG 352 consensus_7835#1 CATAAGTCAACCTGCAGCACACACACACACCCAACCCCAAGTTTGGAAA-GGAAATGAGG 351 **************** ********** ************ *** ********** consensus_7835#0 AAACATTGATTTTTCCCGTTTTCTTCGCATCCAATTTGCAAAGTAATAATACGGGGCTTT 412 consensus_7835#1 AAACATTGATTTTTCCCGTTTTCTTCGCATCCAATTTGCAAAGTAATAATACGGGGCTTT 411 ************************************************************ consensus_7835#0 TGCTAGTTCAGCGGTTGACAGGTTCTCTGCTTCATGTTTGACGTTTGTCAGGTACAGGGA 472 consensus_7835#1 TGCTAGTTCAGCGGTTGACAGGTTCTCTGCTTCATGTTTGACGTTTGTCAGGTACAGGGA 471 ************************************************************ consensus_7835#0 CACAACACGGTACAGCGGCGAAAGCGCAAGCGAAGTGGGCTGGAAAAATCGTTGTGACAC 532 consensus_7835#1 CACAACACGGTACAGCGGCGAAAGCGCAAGCGAAGTGGGCTGGAAAAATCGTTGTGACAC 531 ************************************************************ consensus_7835#0 CCCGTTTCAACCCAACCCCGTGTGAAGGCGTAAGTGTGTATTGTGCGTGCGTGTTCGAGG 592 consensus_7835#1 CCCGTTTCAACCCAACCCCGTGTGAAGGCGTAAGTGTGTATTGTGCGTGCGTGTTCGAGG 591 ************************************************************ consensus_7835#0 CAAAAAACCGACGACGACGACGACGACACGATCGATCCAAGTGATAATCAAGTGCTGTGA 652 consensus_7835#1 CAAAAAACCGACGACGACGAC------ACGATCGATCCAAGTGATAATCAAGTGCTGTGA 645 ********************* ********************************* consensus_7835#0 AATTACAAATAATACATTTTAATCAAGGAAAGTTAAGGCCCAGAAAGTACAAGACACACA 712 consensus_7835#1 AATTACAAAGAATACATTTTAATCGAAGAAGGAAAAG-----AAAAGTAAGA-------- 692 ********* ************** * *** * *** ****** * consensus_7835#0 CACGCTGCTCACTACAAGCAGCAGAGCACAAGCTGGACAGTTCAAATAGCATTACTAAGG 772 consensus_7835#1 ------------------------------------------------------------ consensus_7835#0 CGAGAAAAGGAGCACAAACCGATTTTCGGG 802 consensus_7835#1 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||