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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7855#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1089 fasta sequence
[GGAAAATGGCCCGATGGTCGTCAACCTGCCAATGGATTACATTATGCCCGCCGTGACCGAGCTGGGGCGCTTCCATGGCGAATGTTACGGCTTGAAGGTGGCGCACCGCCCCCAGTTCGACAGCATGATTGCAAAGTTTAAGGAATCTCGCTACGCCGCCGACATTACGGACCACACGTGGAAAGCGGTCATGACCGTTGCACCGATGCGTGCCATCAAAGCCCTGAAGGAGAGCCGGTTCAAGGGCCTGGTGCCGGCGGGCTACCTGGAAAAGCTGGCCCGCCTGTTCCAGGATCCGTGGGAGCACGCGAAGGGTAAGGTGAAGCCGCGCGAACCGCTCGCCGTCATTTGCCATGGCGACTATCTGCGCAACAACATGGCGTTCCGGTACGCAGATGCGAAGAACCCAGCCCGACCCACTCAAGTGATGATGTTTGACTTTCAAACGCTGCGCTACGCATCACCGATGATCGATTATGCTGCCTTCCTTGCCAACTCGACCGGGTACGCCGAGCGGGAGCACCATTTCGATACCATCTTCCGCACCTATCACGGTGCGCTGGTACAGACGGTGGCCACCGTCGTCGGCGTTCCCGAGCCCGCCGATCTGCCACCGTACTTCAGCTACGAATCATTCCATCGCGAGCTGGCCGAATACTACTCGTACGGCTTCAACATTGCGTCCGCGTTCCTGACTTGTGCGATGGGTTTTAAAGTTTTAATTTTGCGCCACAATGGTTATTGAAGGTGGTAATGGGGTATTTGATCAATAGTGATAAAGGTTCTGGTAAGAGCAGCTTCCATTAAGATGCCATCAAGCTTTTCATACCAGTATGTTCTTTATTGCGACTGTTGCATGATTGAATTTCGTGTCATGCAAAACTGTAAAATAATATTAAAGATCTGGCAACGAGTTCTACTGAACGTCTGATGTACCATTTCAGTAAAGTCGATACCTGAGTCCGAGCTTGGTATTTCATTTCATTTTTTTCCAAATTTATTCCAAAAACCTAAAGACTACACAGCGCTTTCGAATGAATCGAAATCTAAATTTCCTGGAATAAAGCAATTGCTCTGCAGCTTACCAGT]
[+] EMBL CNS08RB0 [GGAAAATGGCCCGATGGTCGTCAACCTGCCAATGGATTACATTATGCCCGCCGTGACCGAGCTGGGGCGCTTCCATGGCGAATGTTACGGCTTGAAGGTGGCGCACCGCCCCCAGTTCGACAGCATGATTGCAAAGTTTAAGGAATCTCGCTACGCCGCCGACATTACGGACCACACGTGGAAAGCGGTCATGACCGTTGCACCGATGCGTGCCATCAAAGCCCTGAAGGAGAGCCGGTTCAAGGGCCTGGTGCCGGCGGGCTACCTGGAAAAGCTGGCCCGCCTGTTCCAGGATCCGTGGGAGCACGCGAAGGGTAAGGTGAAGCCGCGCGAACCGCTCGCCGTCATTTGCCATGGCGACTATCTGCGCAACAACATGGCGTTCCGGTACGCAGATGCGAAGAACCCAGCCCGACCCACTCAAGTGATGATGTTTGACTTTCAAACGCTGCGCTACGCATCACCGATGATCGATTATGCTGCCTTCCTTGCCAACTCGACCGGGTACGCCGAGCGGGAGCACCATTTCGATACCATCTTCCGCACCTATCACGGTGCGCTGGTACAGACGGTGGCCACCGTCGTCGGCGTTCCCGAGCCCGCCGATCTGCCACCGTACTTCAGCTACGAATCATTCCATCGCGAGCTGGCCGAATACTACTCGTACGGCTTCAACATTGCGTCCGCGTTCCTGACTTGTGCGATGGGTTTTAAAGTTTTAATTTTGCGCCACAATGGTTATTGAAGGTGGTAATGGGGTATTTGATCAATAGTGATAAAGGTTCTGGTAAGAGCAGCTTCCATTAAGATGCCATCAAGCTTTTCATACCAGTATGTTCTTTATTGCGACTGTTGCATGATTGAATTTCGTGTCATGCAAAACTGTAAAATAATATTAAAGATCTGGCAACGAGTTCTACTGAACGTCTGATGTACCATTTCAGTAAAG ]
[-] EMBL CNS08RB1 [ TCCGCGTTCCTGACTTGTGCGATGGGTTTTAACGTTTTAATTTTGCGCCACAATGGTTATTGAAGGTGGTAATGGGGTATTTGATCAATAGTGATAAAGGTTCTGGTAAGGGCAGCTTCCATTAAGATGCCATCAAGCTTTTCATACCAGTATGTTCTTTATTGCGACTGTTGCATGATTGAATTTCGTGTCATGCAAAACTGTAAAATAATATTAAAGGTCTGGCAACGAGTTCTACTGAACGTCTGATGTACCATTTCAGTAAAGTCGATACCTGAGTCCGAGCTTGGTATTTCATTTCATTTTTTTCCAAATTTATTCCAAAAACCTAAAGACTACACAGCGCTTTCGAATGAATCGAAATCTAAATTTCCTGGAATAAAGCAATTGCTCTGCAGCTTACCAGT]
consensusID : consensus_7855#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1063 fasta sequence
[CCCACGCGTCCGCATTATGCTCGCCGTGACCGAGCTGGGGCGCTTCCATGGCGAATGTTACGGCTTGAAGGTGGCGCACCGCCCCCAGTTCGACAGCATGATTGCAAAGTTTAAGGAATCTCGCTACGCCGCCGACATTACGGACCACACGTGGAAAGCGGTCATGACCGTTGCACCGATGCGTGCCATCAAAGCCCTGAAGGAGAGCCGGTTCAAGGGCCTGGTGCCGGCGGACTACCTGGAAAAGCTGGCCCGCCTGTTCCAGGATCCGTGGGAGCACGCGAAGGGTAAGGTGAAGCCGCGCGAACCGCTCGCCGTCATTTGCCATGGCGACTATCTGCGCAACAACATGGCGTTCCGGTACGCAGATGCGAAGAACCCAGCCCGACCCACTCAAGTGATGATGTTTGACTTTCAAACGCTGCGCTACGCATCACCGATGATCGATTATGCTGCCTTCCTTGCCAACTCGACCGGGTACGCCGAGCGGGAGCACCATTTCGATACCATCTTCCGCACCTATCACGGTGCGCTGGTACAGACGGTGGCCACC-GTCGTCGGCGTTTCCGAGCCCGCCGATCTGCCACCGTACTTCAGCTACGAATCATTCCATCGCGAGCTGGCCGAATACTACTCGTACGGCTTTAACATTGCGTCCGCGTTCCTGATGATACTGCACGAACCGATGGAGATATCATTCACCGAAAACATCTTCACCGAGGAGGAATCGGTGGCCGATGCGTGGAAGCGGGGCGGCGAACCACTCGACCGGGAGCTGGCGGCGATGGTGTACGAGATGTACCGGCTCCACTCCCAGTACGGGCTCGATCCGGTGTGATCGGGTTTCTCCTGGGTGGAGCGTGCGGATCGATGGAAGTGCTGAACAGGCTCACCACAGCAACACGTGCGCGCACCATTGACTTGTGCGATGGGTTTTAACGTTTTAATTTTGCGCCACAATGGTTATTGAAGGGAATGGGGTATTTGATCAATAGTGATAAAGGTTCTGGTAAGAGCAGCTTCCATTAAGTTAAAAAAAAGCTTTTCATTCCAGTAAAAAAAA]
[+] EMBL BM650722 [CCCACGCGTCCGCATTATGCTCGCCGTGACCGAGCTGGGGCGCTTCCATGGCGAATGTTACGGCTTGAAGGTGGCGCACCGCCCCCAGTTCGACAGCATGATTGCAAAGTTTAAGGAATCTCGCTACGCCGCCGACATTACGGACCACACGTGGAAAGCGGTCATGACCGTTGCACCGATGCGTGCCATCAAAGCCCTGAAGGAGAGCCGGTTCAAGGGCCTGGTGCCGGCGGACTACCTGGAAAAGCTGGCCCGCCTGTTCCAGGATCCGTGGGAGCACGCGAAGGGTAAGGTGAAGCCGCGCGAACCGCTCGCCGTCATTTGCCATGGCGACTATCTGCGCAACAACATGGCGTTCCGGTACGCAGATGCGAAGAACCCAGCCCGACCCACTCAAGTGATGATGTTTGACTTTCAAACGCTGCGCTACGCATCACCGATGATCGATTATGCTGCCTTCCTTGCCAACTCGACCGGGTACGCCGAGCGGGAGCACCATTTCGATACCATCTTCCGCACCTATCACGGCGCGCTGGTACAGACGGTGGCCACCGGTCGTCGGCGTTTCCGAGCCCGCCGATCTGCCACCGTACTTCAGCTACGAATCATTCCATCGCGAGCTGGCCGAATACTACTCGTACGGCTTCAACAT ]
[+] EMBL BM634752 [ ccgttccaCTC CAGTGACCGAGCTGGGGCGCTTTCATGGCGAATGTTACGGCTTGAAGGTGGCGCACCGCCCCCAGTTCGACAGCATGATTGCAAAGTTTAAGGAATCTCGCTACGCCGCCGACATTACGGACCACACGTGGAAAGCGGTCATGACCGTTGCACCGATGCGTGCCATCAAAGCCCTGAAGGAGAGCCGGTTCAAGGGCCTGGTGCCGGCGGACTACCTGGAAAAGCTGGCCCGCCTGTTCCAGGATCCGTGGGAGCACGCGAAGGGTAAGGTGAAGCCGCGCGAACCGCTCGCCGTCATTTGCCATGGCGACTATCTGCGCAACAACATGGCGTTCCGGTACGCAGATGCGAAGAACCCAGCCCGACCCACTCAAGTGATGATGTTTGACTTTCAAACGCTGCGCTACGCATCACCGATGATCGATTATGCTGCCTTCCTTGCCAACTCGACCGGGTACGCCGAGCGGGAGCACCATTTCGATACCATCTTCCGCACCTATCACGGTGCGCTGGTACAGACGGTGGCCACC GTCGTCGGCGTTTCCGAGCCCGCCGATCTGCCACCGTACTTCAGCTACGAATCATTCCATCGCGAGCTGGCCGAATACTACTCGTACGGCTTTAACATTGCGTCCGCGTTCCTGATGATACTGCACGAACCGATGGAGATATCATTCACCGAAAACATCTTCA ]
[+] EMBL AGA285100 [ GCCGTCATTTGCCATGGCGACTATCTGCGCAACAACATGGCGTTCCGGTACGCAGATGCGAAGAACCCAGCCCGACCCACTCAAGTGATGATGTTTGACTTTCAAACGCTGCGCTACGCATCACCGATGATCGATTATGCTGCCTTCCTTGCCAACTCGACCGGGTACGCCGAGCGGGAGCACCATTTCGATACCATCTTCCGCACCTATCACGGTGCGCTGGTACAGACGGTGGCCACC GTCGTCGGCGTTCCCGAGCCCGCCGATCTGCCACCGTACTTCAGCTACGAATCATTCCATCGCGAGCTGGCGGAATACTACTCGTACGGCTTTAACATTGCGTCCGCGTTCCTGATGATACTGCACGAACCGATGGAGATATCATTCACCGAAAACATCTTCAC ]
[-] EMBL AGA283931 [ TACTCGTACGGCTTTAACATTGCGTCCGCGTTCCTGATGATACTGCATGAACCGATGGAGATATCATTCACCGAAAACATCTTCACCGAGGAGGAATCGGTGGCCGATGCGTGGAAGCGGGGCGGCGAACCACTCGACCGGGAGCTGGCGGCGATGGTGTACGAGATGTACCGGCTCCACTCCCAGTACGGGCTCGATCCGGTGTGATCGGGTTTCTCCTGGGTGGAGCGTGCGGATCGATGGAAGTGCTGAACAGGCTCACCACAGCAACACGTGCGCGCACCATTGACTTGTGCGATGGGTTTTAACGTTTTAATTTTGCGCCACAATGGTTATTGAAGGGAATGGGGTATTTGATCAATAGTGATAAAGGTTCTGGTAAGAGCAGCTTCCATTAAGTTAAAAAAAA ]
[-] EMBL AGA283809 [ ACGGCTTTAACATTGCGTCCGCGTTCCTGATGATACTGCACGAACCGATGGAGATATCATTCACCGAAAACATCTTCACCGAGGAGGAATCGGTGGCCGATGCGTGGAAGCGGGGCGGCGAACCACTCGACCGGGAGCTGGCGGCGATGGTGTACGAGATGTACCGGCTCCACTCCCAGTACGGGCTCGATCCGGTGTGATCGGGTTTCTCCTGGGTGGAGCGTGCGGATCGATGGAAGTGCTGAACAGGCTCACCACAGCAACACGTGCGCGCACCATTGACTTGTGCGATGGGTTTTAACGTTTTAATTTTGCGCCACAATGGTTATTGAAGGGAATGGGGTATTTGATCAATAGTGATAAAGGTTCTGGTAAGAGCAGCTTCCATTAAGATACCATCAAGCTTTTCATTCCAGTAAAAAAAA]
[+] EMBL BM588526 [ ccgGGGCTCGATCCGGTGTGATCGGGTTTCTCCTGGGTGGAGCGTGCGGATCGATGGAAGTGCTGAACAGGCTCACCACAGCAACACGTGCGCGCACCATTGACTTGTGCGATGGGTTTTAACGTTTTAATTTTGCGCCACAATGGTTATTGAAGGGAATGGGGTATTTGATCAATAGTGATAAAGGTTCTGGTAAGAGCAGCTTCCATT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7855#0 GGAAAATGGCCCGATGGTCGTCAACCTGCCAATGGATTACATTATGCCCGCCGTGACCGA 60
consensus_7855#1 ---------------------------CCCACGCGTCCGCATTATGCTCGCCGTGACCGA 33
*** * ******** ************
consensus_7855#0 GCTGGGGCGCTTCCATGGCGAATGTTACGGCTTGAAGGTGGCGCACCGCCCCCAGTTCGA 120
consensus_7855#1 GCTGGGGCGCTTCCATGGCGAATGTTACGGCTTGAAGGTGGCGCACCGCCCCCAGTTCGA 93
************************************************************
consensus_7855#0 CAGCATGATTGCAAAGTTTAAGGAATCTCGCTACGCCGCCGACATTACGGACCACACGTG 180
consensus_7855#1 CAGCATGATTGCAAAGTTTAAGGAATCTCGCTACGCCGCCGACATTACGGACCACACGTG 153
************************************************************
consensus_7855#0 GAAAGCGGTCATGACCGTTGCACCGATGCGTGCCATCAAAGCCCTGAAGGAGAGCCGGTT 240
consensus_7855#1 GAAAGCGGTCATGACCGTTGCACCGATGCGTGCCATCAAAGCCCTGAAGGAGAGCCGGTT 213
************************************************************
consensus_7855#0 CAAGGGCCTGGTGCCGGCGGGCTACCTGGAAAAGCTGGCCCGCCTGTTCCAGGATCCGTG 300
consensus_7855#1 CAAGGGCCTGGTGCCGGCGGACTACCTGGAAAAGCTGGCCCGCCTGTTCCAGGATCCGTG 273
******************** ***************************************
consensus_7855#0 GGAGCACGCGAAGGGTAAGGTGAAGCCGCGCGAACCGCTCGCCGTCATTTGCCATGGCGA 360
consensus_7855#1 GGAGCACGCGAAGGGTAAGGTGAAGCCGCGCGAACCGCTCGCCGTCATTTGCCATGGCGA 333
************************************************************
consensus_7855#0 CTATCTGCGCAACAACATGGCGTTCCGGTACGCAGATGCGAAGAACCCAGCCCGACCCAC 420
consensus_7855#1 CTATCTGCGCAACAACATGGCGTTCCGGTACGCAGATGCGAAGAACCCAGCCCGACCCAC 393
************************************************************
consensus_7855#0 TCAAGTGATGATGTTTGACTTTCAAACGCTGCGCTACGCATCACCGATGATCGATTATGC 480
consensus_7855#1 TCAAGTGATGATGTTTGACTTTCAAACGCTGCGCTACGCATCACCGATGATCGATTATGC 453
************************************************************
consensus_7855#0 TGCCTTCCTTGCCAACTCGACCGGGTACGCCGAGCGGGAGCACCATTTCGATACCATCTT 540
consensus_7855#1 TGCCTTCCTTGCCAACTCGACCGGGTACGCCGAGCGGGAGCACCATTTCGATACCATCTT 513
************************************************************
consensus_7855#0 CCGCACCTATCACGGTGCGCTGGTACAGACGGTGGCCACCGTCGTCGGCGTTCCCGAGCC 600
consensus_7855#1 CCGCACCTATCACGGTGCGCTGGTACAGACGGTGGCCACCGTCGTCGGCGTTTCCGAGCC 573
**************************************************** *******
consensus_7855#0 CGCCGATCTGCCACCGTACTTCAGCTACGAATCATTCCATCGCGAGCTGGCCGAATACTA 660
consensus_7855#1 CGCCGATCTGCCACCGTACTTCAGCTACGAATCATTCCATCGCGAGCTGGCCGAATACTA 633
************************************************************
consensus_7855#0 CTCGTACGGCTTCAACATTGCGTCCGCGTTCCTGAC--TTGTGCGATGGGTTTTAAAGTT 718
consensus_7855#1 CTCGTACGGCTTTAACATTGCGTCCGCGTTCCTGATGATACTGCACGAACCGATGGAGAT 693
************ ********************** * *** * ** *
consensus_7855#0 TTAATTTTGCGCCACAATGGTTATTGAAGGTGGTAATGGGGTATTTGATCAATAGTGATA 778
consensus_7855#1 ATCATTCACCGAAAACATCTTCACCGAGGAGGAATCGGTGGCCGATGCGTGGAAGCGGGG 753
* *** ** * ** * * ** * * * ** ** ** *
consensus_7855#0 AAGGTTCTGGTAAGAGCAGCTTCCATTAA-GATGCCATCAAGCTTTTCATACCAGTATGT 837
consensus_7855#1 CGGCGAACCACTCGACCGGGAGCTGGCGGCGATGGTGTACGAGATGTACCGGCTCCACTC 813
* ** * * * **** * * * * *
consensus_7855#0 TCTTTATTGCGACTGTT--GCATGATTGAATTTCGTGTCATGCAAAACTGTAAAATAATA 895
consensus_7855#1 CCAGTACGGGCTCGATCCGGTGTGATCGGGTTTCTCCTGGGTGGAGCGTGCGGATCGATG 873
* ** * * * * **** * **** * * ** * **
consensus_7855#0 TTAAAGATCTGGCAACGAGTTCTACTGAACGTCTGATGTACCATTTCAGTAAAGTCGATA 955
consensus_7855#1 --GAAGTGCTG--AACAGGCTCACCACAGCAACACGTGCGC-------GCACCATTGACT 922
*** *** *** * ** * * * * ** * * * * **
consensus_7855#0 CCTGAGTCCGAGCTTGGTATTTCATTTCATTTTTTTCCAAATTTATTCCAAAAACCTAAA 1015
consensus_7855#1 TGTGCGATGGGTTTTAACGTTTTAATTT-TGCGCCACAATGGTTATTGAAGGGAATGGGG 981
** * * ** *** * ** * * * ***** * *
consensus_7855#0 GACTACA-CAGCGCTTTCGAATGAATCG--AAATCTAAATTTCCTGGAATAAAGCAATTG 1072
consensus_7855#1 TATTTGATCAATAGTGATAAAGGTTCTGGTAAGAGCAGCTTCCATTAAGTTAAAAAAAAG 1041
* * * ** * ** * * ** * ** * * * * ** ** *
consensus_7855#0 CTCTGCAGCTTACCAGT----- 1089
consensus_7855#1 CTTTTCATTCCAGTAAAAAAAA 1063
** * ** * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||