These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_788#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 784 fasta sequence [CCGGCAGCAGCAACCACTAGCAGTGAGAGCGGGAGCTAGTAAGAAAAAAAAAGAAAAAGACCAGCTTTCCAGGGGATGATGTGTAACAAGTTGTGAGAAGCTGGCTGGTTCCGGATCTTGCCGGGAAAAAAGCGTACCTCAACGCTCGGTGTGGAGTGAAAACTGTGAGAGCTTACGAAAAATTTAGCCCAAAAACGTTTGACAAGGGTGCTAAAGACACAACAAAGCTTCATATAATAGACCGTATAGGCTCTAGTGTGTTACCAGGAGATAGTGTAGCTAGCTTTATTTCGAATTGTTTTGTTTATTTTTAGTACCAAATCATCCGTCTACAGTCCGTATCCTGTACCCATTGACCACATCCACAGCGTGCGTGTTACTTCAAACGTTTTCCAGCAGTGCATTCGTGCATCGTTAGTGAGCTAGTGGTGCGAGCAGTGCGAGAAGTGCGTGACGATAGTGTGTCGGTAGTGTCTGTAAAGTTGAAACTCTCGACCATACTTCCTCGGCCCTTTTGGATACGTCACATTGTATCGTCCCATTCAAGGTGAAATAAAGTTTCGATAGTTGATTGCGACCTCAAGGAATAACCCAGCATTAATCCCCCTCGAAGGCTCGACAGACAGATTACGCAAGACAACGAACTATGTCGAGTCAACAGAAGCATCGGATTCAGGATTCCTGACGGCCTAAGGGATGTGCTGCTGGAGTTTTCCATAGCGTACCTGCTGGAGCACCCGGGCGATGTGATCGATTACCCGGGAACGTTCTTTTACAAGCTGGC] [+] EMBL BM617822 [CCGGCAGCAGCAACCACTAGCAGTGAGAGCGGGAGCTAGTAAGAAAAAAAAAGAAAAAGACCAGCTTTCCAGGGGATGATGTGTAACAAGTTGTGAGAAGCTGGCTGGTTCCGGATCTTGCCGGGAAAAAAGCGTACCTCAACGCTCGGTGTGGAGTGAAAACTGTGAGAGCTTACGAAAAATTTAGCCCAAAAACGTTTGACAAGGGTGCTAAAGACACAACAAAGCTTCATATAATAGACCGTATAGGCTCTAGTGTGTTACCAGGAGATAGTGTAGCTAGCTTTATTTCGAATTGTTTTGTTTATTTTTAGTACCAAATCATCCGTCTACAGTCCGTATCCTGTACCCATTGACCACATCCACAGCGTGCGTGTTACTTCAAACGTTTTCCAGCAGTGCATTCGTGCATCGTTAGTGAGCTAGTGGTGCGAGCAGTGCGAGAAGTGCGTGACGATAGTGTGTCGGTAGTGTCTGTAAAGTTGAAACTCTCGACCATACTTCCTCGGCCCTTTTGGATACGTCACATTGTATCGTCCCATTCAAGGTGAAATAAAGTTTCGATAGTTGATTGCGACCTCAAGGAATAACCCAGCATTAATCCCCCTCGAAGGCTCGACAGACAGATTACGCAAGACAACGAACTATGTCGAGTCAACAGAAGCATCGGATTCAGGATTCCTGACGGCCTAAGGGATGTGCTGCTGGAGTTTTCCATAGCGTACCTGCTGGAGCACCCGGGCGATGTGATCGATTACCCGGGAACGTTCTTTTACAAGCTGGC] consensusID : consensus_788#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence [CCGCTGAAGTGAAAGCTACCAGCCGTGCGTGCGAGCTGTGAAAAAGTGACCACCTTGTGAAGGTTGTTTTATTTTTTCTTTGCCGCCATTGAAGCGCTTTCCGGTCCCGCACTCCGTGCTTCCGGCCGAAACTGGTGCAGTTTTACCCATCGATAGGCGACGGTGCTGTGCTCCAAGTCATACTGTGCCAGTGTGTCCAGAAGGCGTCGCGAAAGGTGGTGTTTGCTGCCCGGAGGATCGAAGCAGTCGTGTGACAGTGTACCAAATCATCCGTCTACAGTCCGTATCCTGTACCCATTGACCACATCCACAGCGTGCGTGTTACTTCAAACGTTTTCCAGCAGTGCATTTCGTGCATCGTTAGTGAGC] [+] EMBL BM624667 [CCGCTGAAGTGAAAGCTACCAGCCGTGCGTGCGAGCTGTGAAAAAGTGACCACCTTGTGAAGGTTGTTTTATTTTTTCTTTGCCGCCATTGAAGCGCTTTCCGGTCCCGCACTCCGTGCTTCCGGCCGAAACTGGTGCAGTTTTACCCATCGATAGGCGACGGTGCTGTGCTCCAAGTCATACTGTGCCAGTGTGTCCAGAAGGCGTCGCGAAAGGTGGTGTTTGCTGCCCGGAGGATCGAAGCAGTCGTGTGACAGTGTACCAAATCATCCGTCTACAGTCCGTATCCTGTACCCATTGACCACATCCACAGCGTGCGTGTTACTTCAAACGTTTTCCAGCAGTGCATTTCGTGCATCGTTAGTGAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_788#0 CCGGCAGCAGCAACCACTAGCAGTGAGAGCGGGAGCTAGTAAGAAAAAAAAAGAAAAAGA 60 consensus_788#1 -----------------------------------CCGCT--GAAGTGAAAGCTACCAGC 23 * * *** *** * ** consensus_788#0 CCAGCTTTCCAGGGGATGATGTGTAACAAGTTGTGAGAAGCTGGCTGGTTCCGGATCTTG 120 consensus_788#1 CGTGCGTGCGAGCTGTGAAAAAGTGACCACCT-TGTGAAGGTTGTTTTATTTTTTCTTTG 82 * ** * * ** * * ** ** * * ** **** * * * * *** consensus_788#0 CCGGGAAAAAAGCGTACCTCAACGCTCGGTGTGGAGTGAAAACTGTGAGAGCTTACGAAA 180 consensus_788#1 CCGCCATTGAAGCGCTTTCCG--GTCCCGCACTCCGTGCTTCCGGCCGAAACTGGTGCAG 140 *** * ***** * * * * *** * * * ** * * consensus_788#0 AATTTAGCCCAAAAACGTTTGACAAGGGTGCTAAAGACACAACAAAGCTTCATATAATAG 240 consensus_788#1 --TTTTACCCAT---CGATAGGCGACGGTGCTG----TGCTCCAAGTCATACTGTGCCAG 191 *** **** ** * * * * ****** * *** * * * * ** consensus_788#0 ACCGTATAGGCTCTAGTGTGTTACCAGGAGATAGTGTA-GCTAGCTTTATT-TCGAATTG 298 consensus_788#1 TGTGTCCAG-----AAGGCGTCGCGAA-AGGTGGTGTTTGCTGCCCGGAGGATCGAAGCA 245 ** ** * * ** * * ** * **** *** * * ***** consensus_788#0 TTTTGTTTATTTTTAGTACCAAATCATCCGTCTACAGTCCGTATCCTGTACCCATTGACC 358 consensus_788#1 GTCGTGTGACAGT--GTACCAAATCATCCGTCTACAGTCCGTATCCTGTACCCATTGACC 303 * * * * ********************************************* consensus_788#0 ACATCCACAGCGTGCGTGTTACTTCAAACGTTTTCCAGCAGTGCATT-CGTGCATCGTTA 417 consensus_788#1 ACATCCACAGCGTGCGTGTTACTTCAAACGTTTTCCAGCAGTGCATTTCGTGCATCGTTA 363 *********************************************** ************ consensus_788#0 GTGAGCTAGTGGTGCGAGCAGTGCGAGAAGTGCGTGACGATAGTGTGTCGGTAGTGTCTG 477 consensus_788#1 GTGAGC------------------------------------------------------ 369 ****** consensus_788#0 TAAAGTTGAAACTCTCGACCATACTTCCTCGGCCCTTTTGGATACGTCACATTGTATCGT 537 consensus_788#1 ------------------------------------------------------------ consensus_788#0 CCCATTCAAGGTGAAATAAAGTTTCGATAGTTGATTGCGACCTCAAGGAATAACCCAGCA 597 consensus_788#1 ------------------------------------------------------------ consensus_788#0 TTAATCCCCCTCGAAGGCTCGACAGACAGATTACGCAAGACAACGAACTATGTCGAGTCA 657 consensus_788#1 ------------------------------------------------------------ consensus_788#0 ACAGAAGCATCGGATTCAGGATTCCTGACGGCCTAAGGGATGTGCTGCTGGAGTTTTCCA 717 consensus_788#1 ------------------------------------------------------------ consensus_788#0 TAGCGTACCTGCTGGAGCACCCGGGCGATGTGATCGATTACCCGGGAACGTTCTTTTACA 777 consensus_788#1 ------------------------------------------------------------ consensus_788#0 AGCTGGC 784 consensus_788#1 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||