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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7884#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1083 fasta sequence
[TCCCCACGTATTAATGCTAGAGCTGTGCCCGTCCCGTGTGCATATTTTAAAGTACGACGAGAAAACGCTGCTGGAGGAAGCGAAAGATATGAACGTGGCCAAAATGCGTCAGATCATCCGGACGAATGGTATGGTCAATGGCATATTCTACATTCTGCTGTTAAACATGAACGCTAAGTTCACCAAGAAGCTAGGCATGGCGCCGGGAGGAGAGTTTCGGTGCGCGGTCAAGGAGGCTCAGCAGATCCCGAACTGCGTCATACAGCTTGGCGACCGCGAGATCAAAGTGACGCTGCACCGTGCCCTGCGCGGCCTGTCCCTCTGGCAAACGATCAAGCTGCTTCCGAAGCTGCTGTTCATCGATGACGACATTAGTATCGAGGAGGTGGAGCAATGCAAGCGGAAGGACCTGCTCGAGGAGATAATGCTCGAAATGGCCGGCGAGTATC-CCGCCTTCGGGCGAGTGTTCATCCACGAGCGTGATCTCTACCTGTGCCATTCGC-TGCAGCTGGCCGCACGGCCGCAGATCAACCCGGTCGACGGACGTTCCGAGCCGATACGAGTGGTGGGAGTAGTGGGTATTGGCCACGCTGCCG-GCATCGCCAAGCACTGGGGCAAGGTTGAGATCAGCAACATCGAGTCGATCATAACGATTCCACCGGCCAGCTTTGGGCATCGTATGGTGAAGTACACCGTCAAGTATGGTTTGCTCGGGCTCGCGGCAT-ACGGTGTGTTCCGAATCGCTCGTCCC-CGGTTCGAGCGACTTTTCCTATGATTCATTTACGGATTTCTTGGCAAAACGGGCTCGAGAACATGTCGTGAGGCTAATTATGCGATGGCCACAGCACAGAATCAAACTATACATATTAATCGAGTGTAGGCGCGCGGGAGGTGGTGGTGGGAGTAG-ATGAAAGGAAGTTCCATATCTCTTCTCGCTAAATGCACCAAAAGACTTTACTTTATCTTTTTTGCCAGCATTCCAGGGAGTTAAAATCAGGACTGACGCACAATCTAACGCAAGGTGCCAGAGAGATGCGAGGGAGATAAAGTTTAGAAAATAAAGCCACCAGTTATCAGTCCCAA]
[+] EMBL CNS096ZW [TCCCCACGTATTAATGCTAGAGCTGTGCCCGTCCCGTGTGCATATTTTAAAGTACGACGAGAAAACGCTGCTGGAGGAAGCGAAAGATATGAACGTGGCCAAAATGCGTCAGATCATCCGGACGAATGGTATGGTCAATGGCATATTCTACATTCTGCTGTTAAACATGAACGCTAAGTTCACCAAGAAGCTAGGCATGGCGCCGGGAGGAGAGTTTCGGTGCGCGGTCAAGGAGGCTCAGCAGATCCCGAACTGCGTCATACAGCTTGGCGACCGCGAGATCAAAGTGACGCTGCACCGTGCCCTGCGCGGCCTGTCCCTCTGGCAAACGATCAAGCTGCTTCCGAAGCTGCTGTTCATCGATGACGACATTAGTATCGAGGAGGTGGAGCAATGCAAGCGGAAGGACCTGCTCGAGGAGATAATGCTCGAAATGGCCGGCGAGTATC CCGCCTTCGGGCGAGTGTTCATCCACGAGCGTGATCTCTACCTGTGCCATTCGC TGCAGCTGGCCGCACGG CGCAGATCAACCCGGTCGACGGACGTTCCGAGCCGATACGAGTGGTGGGAGTAGTGGGTATTGGCCACGCTGCCG GCATCGCCAAGCACTGGGGCAAGGTTGAGATCAGCAACATCGAGTCGATCATAACGATTCCACCGGCCAGCTTTGGGCATCGTATGGTGAAGTACACCGTCAAGTATGGTTTGCTCGGGCTCGCGGCAT ACGGTGTGTTCCGAATCGCTCGTCCC CGGTTCGAGCGACTTTTCCTATGATTCATTTACGGATTTCTTGGCAAAACGGGCTCGAGAACATGTCGTGAGGCTAATTATGCGATGGCCACAGCACAGAATCAAACTATACATATTAATCGAGTGTAGGCGCGCGGGAGGTGGTGGTGGGAGTAG ATGAAAGGAAGTTCCATATCTCTTCTCGCTAAATGCACCAAAAGACTTTACTTTATCTTTTTTGCCAGCATTCCAGGGAGTTAA ]
[+] EMBL CNS097ZV [ AATGCTAGAGCTGTGCCCG ACCGTGTGCATATTTTAAAGTACGACGAGAAAACGCTGCTGGAGGAAGCGAAAGATATGAACGTGGCCAAAATGCGTCAGATCATCCGGACGAATGGTATGGTCAATGGCATATTCTACATTCTGCTGTTAAACATGAACGCTAAGTTCACCAAGAAGCTAGGCATGGCGCCGGGAGGAGGGTTTCGGTGCGCGGTCAAGGAGGCTCAGCAGATCCCGAACTGCGTCATACAGCTTGGCGACCGCGAGATCAAAGTGACGCTGCACCGTGCCCTGCGCGGCCTGTCCCTCTGGCAAACGATCAAGCTGCTTCCGAAGCTGCTGTTCATCGATGACGACATTAGTATCGAGGAGGTGGAGCAATGCAAGCGGAAGGACCTGCTCGAGGAGATAATGCTCGAAATGGCCGGCGAGTATC CCGCCTTCGGGCGAGTGTTCATCCACGAGCGTGATCTCTACCTGTGCCATTCGC TGCAGCTGGCCGCACGG CGCAGATCAACCCGGTCGACGGACGTTCCGAGCCGATACGAGTGGTGGGAGTAGTGGGTATTGGCCACGCTGCCG GCATCGCCAAGCACTGGGGCAAGGTTGAGATCAGCAACATCGAGTCGATCATAACGATTCCACCGGCCAGCTTTGGGCATCGTATGGTGAAGTACACCGTCAAGTATGGTTTGCTCGGGCTCGCGGCATAACGGTGTGTTCCGAATCGCTCGTCCC CGGTTCGAGCGACTTTTCCTATGATTCATTTACGGATTTCTTGGCAAAACGGGCTCGAGAACATGTCGTGAGGCTAATTATGCGATGGCCACAGCACAGAATCAAACTATACATATTAATCGAGTGTAGGCGCGCGGGAGGTGGTGGTGGGAGTAG ATGAAAGGAAGTCCCATATCTCTTCTCGCTAAATGCACCAAAAGACTTTACTTTATCTTTT ]
[+] EMBL BX629113 [ nGACGAATGGTATGGTCAATGGCATATTCTACATTCTGCTGTTAAACATGAACGCTAAGTTCACCAAGAAGCTAGGCATGGCGCCGGGAGGAGAGTTTCGGTGCGCGGTCAAGGAGGCTCAGCAGATCCCGAACTGCGTCATACAGCTTGGCGACCGCGAGATCAAAGTGACGCTGCACCGTGCCCTGCGCGGCCTGTCCCTCTGGCAAACGATCAAGCTGCTTCCGAAGCTGCTGTTCATCGATGACGACATTAGTATCGAGGAGGTGGAGCAATGCAAGCGGAAGGACCTGCTCGAGGAGATAATGCTCGAAATGGCCGGCGAGTATC CCGCCTTCGGGCGAGTGTTCATCCACGAGCGGGATCTCTACCTGTGCCATTCGC TGCAGCTGGCCGCACGGCCGCAGATCAACCCAGTCGACGGACGTTCCGAGCCGATACGAGTGGTGGGAGTAGTGGGTATTGGCCACGCTGCCG GCATCGCCAAGCACTGGGGCAAGGTTGAGATCAGCAACATCGAGTCGATCATAACGATTCCACCGGCCAGCTTTGGGCATCGTATGGTGAAGTACACTGTCAAGTATGGTTTG ]
[-] EMBL CNS09CS5 [ TGGTATGGTCAATGGCATATTCTACATTCTGCTGTTAAACATGAACGCTAAGTTCACCAAGAAGCTAGGCATGGCGCCGGGAGGAGAGTTTCGGTGCGCGGTCAAGGAGGCTCAGCAGATCCCGAA TGCGTCATACAGCTTGGCGACCGCGAGATCAAAGTGACGCTGCACCGTGCCCTGCGCGGCCTGTCCCTCTGGCAAACGATCAAGCTGCTTCCGAAGCTGCTGTTCATCGATGACGACATTAGTATCGAGGAGGTGGAGCAATGCAAGCGGAGGGACCTGCTCGAGGAGATAATGCTCGAAATGGCCGGCGAGTATCTCCG CTTCGGGCGAGTGTTCATCCACGAGCGTGATCTCTACCTGTGCCATTCGC TGCAGCTGGCCGCACGGCCGCAGATCAACCCGGTCGACGGACGTTCCGAGCCGATACGAGTGGTGGGAGTAGTGGGTATTGGCCACGCTGCCG GCATCGCCAAGCACTGGGGCAAGGTTGAGATCAGCAACATCGAGTCGATCATAACGATTCCACCGGCCAGCTTTGGGCATCGTATGGTGAAGTACACCGTCAAGTATGGTTTGCTCGGGCTCGCGGCAT ACGGTGTGTTCCGAATCGCTCGTCCC CGGTTCGAGCGACTTTTCCTATGATTCATTTACGGATTTCTTGGCAAAACGGGCTCGAGAACATGTCGTGAGGCTAATTATGCGATGGCCACAGCACAGAATCAAACTATACATATTAATCGAGTGTAGGCGCGCGGGAGGTGGTGGTGGGAGTAG ATGAAAGGAAGTTCCATATCTCTTCTCGCTAAATGCACCAAAAGACTTTACTTTATCTTTTTTGCCAGCATTCCAGGGAGTTAAAATCAGAACTGACGCACAATCTAACGCAAGGTGCCAGAGAGATGCGAGGGAGATAAAGTTTAGAAAATAAAGCCACCAGTTATCAGTCCCAA]
[-] EMBL CNS096ZX [ ACCGTGCCCTGCGCGGCCTGTCCCTCTGGCAAACGATCAAGCTGCTTCCGAAGCTGCTGTTCATCGATGACGACATTAGTATCGAGGAGGTGGAGCAATGCAAGCGGAAGGACCTGCTCGAGGAGATAATGCTCGAAATGGCCGGCGAGTATC CCG CTTCGGGCGAGTGTTCATCCACGAGCGTGATCTCTACCTGTGCCATTCGCGTGCAGCTGGCCGCACGGCCGCAGATCAACCCGGTCGACGGACGTTCCGAGCCGATACGAGTGGTGGGAGTAGTGGGTATTGGCCACGCTGCCG GCATCGCCAAGAACTGGGGCAAGGTTGAGATCAGCAACATCGAGTCGATCATAACGATTCCACCGGCCAGCTTTGGGCATCGTATGGTGAAGTACTCCGTCAAGTATGGTTTGCTCGGGCTCGCGGCAT ACGGTGTGTTCCGAATCGCTCGTCCC CGGTTCGAGCGACTTTTCCTATGATTCATTTACGGATTTCTTGGCAAAACGGGCTCGAGAACATGTCGTGAGGCTAATTATGCGATGGCCACAGCACAGAATCAAACTATACATATTAATCGAGTGTAGGCGCGCGGGAGGTGGTGGTGGGAGTAG ATGAAAGGAAGTTCCATATCTCTTCTCGCTAAATGCACCAAAAGACTTTACTTTATCTTTTTTGCCAGCATTCCAGGGAGTTAAAATCAGGACTGACGCACAATCTAACGCAAGGTGCCAGAGAGATGCGAGGGAGATAAAGTTTAGAAAATAAAGCCA ]
[+] EMBL BM581348 [ ccgCGACATTAGTATCGAGGAGGTGGAGCAATGCAAGCGGAAGGACCTGCTCGAGGAGATAATGCTCGAAATGGCCGGCGAGTATC CCGCCTTCGGGCGAGTGTTCATCCACGAGCGTGATCTCTACCTGTGCCATTCGC TGCAGCTGGCCGCACGGCCGCAGATCAACCCGGTCGACGGACGTTCCGAGCCGATACGAGTGGTGGGAGTAGTGGGTATTGGCCACGCTGCCG GCATCGCCAAGCACTGGGGCAAGGTTGAGATCAGCAACATCGAGTCGATCATAACGATTCCACCGGCCAGCTTTGGGCATCGTATGGTGAAGTACACTGTCAAGTATGGTTTGCTCGGGCTCGCGGCAT ACGGTGTGTTCCGATTCGCTCGTCCC CGGTTCGAGCGACTTTTCCTATGATTGATTTTCGGATTTCTTGGCAGAACGGGCTCGAGAACATGTCGTGAGGCTAACTATGCGATGGCCACAGCACAGAATCAAACTATACATATTAATCGAGTGTAGGCGCGTGGGAGGTGGTGGTGGGAGTAGAATGCAAGGAAGTTCCATATCTCTTCTC ]
[-] EMBL CNS097ZW [ CTACCTGTGCCATTCGC TGCAGCTGGCCGCACGGCCGCAGATCAACCCGGTCAACGGACGTTCCGAGCCGATACGAGTGGTGGGAGTAGTGGGTATTGGCCACGCTGCCGCGCATCGCCAAGCACTGGGGCAAGGTTGAGATCAGCAACATCGAGTCGATCATAACGATTCCACCGGCCAGCTTTGGGCATCGTATGGTGAAGTACACCTTCAAGTATGGTTTGCTCGGGCTCGCGGCAT ACGGTGTGTTCCCAATCGCTCGTCCCGCGGTTCGAGCGACTTTTCCTATGATTCATTTACGGATTTCTTGGCAAAACGGGCTCGAGAACATGTCGTGAGGCTAATTATGCGATGGCCACAGCACAGAATCAAACTATACATATTAATCGAGTGTAGGCGCGCGGGAGGTGGTGGTGGGAGTAG ATGAAAGGAAGTTCCATATCTCTTCTCGCTAAATGCACCAAAAGACTTTACTTTATCTTTTTTGCCAGCATTCCAGGGAGTTAAAATCAGGACTGACGCACAATCTAACGCAAGGTGCCAGAGAGATGCGTTGGAGATAAAGTTTAGAAAATAAAG ]
consensusID : consensus_7884#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 320 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCGGATTTCTTGGCAGAACGGGCTCGAGAACATGTCGTGAGGCTAACTATGCGATGGCCACAGCACAGAATCAAACTATACATATTAATCGAGTGTAGGCGCGTGGGAGGTGGTGGTGGGAGTAGATGCAAGGAAGTTCCATATCTCTTCTCGCTAAATGCACCAAAAGACTTTACCTTACCTTTATTGCCAGCATTCCAGGGAGTTAAAATCAGAACTGACGCACAATCTAACGCAAGGTGCCAGAGAGATGCGAGGGAGATAAAGTTTAGAAAATAAAGCCACAGTTATCAG]
[+] EMBL BM623163 [CCGCCCACGCGTCCGCCCACGCGTCCGCGGATTTCTTGGCAGAACGGGCTCGAGAACATGTCGTGAGGCTAACTATGCGATGGCCACAGCACAGAATCAAACTATACATATTAATCGAGTGTAGGCGCGTGGGAGGTGGTGGTGGGAGTAGATGCAAGGAAGTTCCATATCTCTTCTCGCTAAATGCACCAAAAGACTTTACCTTACCTTTATTGCCAGCATTCCAGGGAGTTAAAATCAGAACTGACGCACAATCTAACGCAAGGTGCCAGAGAGATGCGAGGGAGATAAAGTTTAGAAAATAAAGCCACAGTTATCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7884#0 TCCCCACGTATTAATGCTAGAGCTGTGCCCGTCCCGTGTGCATATTTTAAAGTACGACGA 60
consensus_7884#1 ------------------------------------------------------------
consensus_7884#0 GAAAACGCTGCTGGAGGAAGCGAAAGATATGAACGTGGCCAAAATGCGTCAGATCATCCG 120
consensus_7884#1 ------------------------------------------------------------
consensus_7884#0 GACGAATGGTATGGTCAATGGCATATTCTACATTCTGCTGTTAAACATGAACGCTAAGTT 180
consensus_7884#1 ------------------------------------------------------------
consensus_7884#0 CACCAAGAAGCTAGGCATGGCGCCGGGAGGAGAGTTTCGGTGCGCGGTCAAGGAGGCTCA 240
consensus_7884#1 ------------------------------------------------------------
consensus_7884#0 GCAGATCCCGAACTGCGTCATACAGCTTGGCGACCGCGAGATCAAAGTGACGCTGCACCG 300
consensus_7884#1 ------------------------------------------------------------
consensus_7884#0 TGCCCTGCGCGGCCTGTCCCTCTGGCAAACGATCAAGCTGCTTCCGAAGCTGCTGTTCAT 360
consensus_7884#1 ------------------------------------------------------------
consensus_7884#0 CGATGACGACATTAGTATCGAGGAGGTGGAGCAATGCAAGCGGAAGGACCTGCTCGAGGA 420
consensus_7884#1 ------------------------------------------------------------
consensus_7884#0 GATAATGCTCGAAATGGCCGGCGAGTATCCCGCCTTCGGGCGAGTGTTCATCCACGAGCG 480
consensus_7884#1 ------------------------------------------------------------
consensus_7884#0 TGATCTCTACCTGTGCCATTCGCTGCAGCTGGCCGCACGGCCGCAGATCAACCCGGTCGA 540
consensus_7884#1 ------------------------------------------------------------
consensus_7884#0 CGGACGTTCCGAGCCGATACGAGTGGTGGGAGTAGTGGGTATTGGCCACGCTGCCGGCAT 600
consensus_7884#1 ------------------------------------------------------------
consensus_7884#0 CGCCAAGCACTGGGGCAAGGTTGAGATCAGCAACATCGAGTCGATCATAACGATTCCACC 660
consensus_7884#1 ------------------------------------------------------------
consensus_7884#0 GGCCAGCTTTGGGCATCGTATGGTGAAGTACACCGTCAAGTATGGTTTGCTCGGGCTCGC 720
consensus_7884#1 ------------------------------------------------------------
consensus_7884#0 GGCATACGGTGTGTTCCGAATCGCTCGTCCCCGGTTCGAGCGACTTTTCCTATGATTCAT 780
consensus_7884#1 ------------------------------------CCGCCCACGCGTCCGCCCACGCGT 24
* * ** *** * * *
consensus_7884#0 TTACGGATTTCTTGGCAAAACGGGCTCGAGAACATGTCGTGAGGCTAATTATGCGATGGC 840
consensus_7884#1 CCGCGGATTTCTTGGCAGAACGGGCTCGAGAACATGTCGTGAGGCTAACTATGCGATGGC 84
************** ****************************** ***********
consensus_7884#0 CACAGCACAGAATCAAACTATACATATTAATCGAGTGTAGGCGCGCGGGAGGTGGTGGTG 900
consensus_7884#1 CACAGCACAGAATCAAACTATACATATTAATCGAGTGTAGGCGCGTGGGAGGTGGTGGTG 144
********************************************* **************
consensus_7884#0 GGAGTAGATGAAAGGAAGTTCCATATCTCTTCTCGCTAAATGCACCAAAAGACTTTACTT 960
consensus_7884#1 GGAGTAGATGCAAGGAAGTTCCATATCTCTTCTCGCTAAATGCACCAAAAGACTTTACCT 204
********** *********************************************** *
consensus_7884#0 TATCTTTTTTGCCAGCATTCCAGGGAGTTAAAATCAGGACTGACGCACAATCTAACGCAA 1020
consensus_7884#1 TACCTTTATTGCCAGCATTCCAGGGAGTTAAAATCAGAACTGACGCACAATCTAACGCAA 264
** **** ***************************** **********************
consensus_7884#0 GGTGCCAGAGAGATGCGAGGGAGATAAAGTTTAGAAAATAAAGCCACCAGTTATCAGTCC 1080
consensus_7884#1 GGTGCCAGAGAGATGCGAGGGAGATAAAGTTTAGAAAATAAAGCCAC-AGTTATCAG--- 320
*********************************************** *********
consensus_7884#0 CAA 1083
consensus_7884#1 ---
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||