These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_789#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 755 fasta sequence [CCGCCCACGCGTACGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGGAGGAGTAAAAATTATTATACCGCAAGCGTTCATTGTGTGCTCCCGATGGGCGCAAGTTTAGAGCTAAAAAGCCATTGCTTAATAGTAGTAGAAGTTTAAACTGATGCCTGCTCACTGATTCGCTTGTTGTAATAAATAGCCAGCGATTTAAGTTTCGGTGTGCATTGATTTTAAATCGTTAGCTTGGCTTGAAAATAGACACTCTTTGTAACGATACGAAAGCTATACGATGCGTGTGAGCATGTTTCGAACGTTATTGGGCGATCGCCCCTTAAATATGCACAATTTTTGAAACAATTGTTCTTTCGGCATGCGTAATTAAATAATACAAATCCTCCGACCCCCACCCAATAGAGAACTCCCAAAAAAAAAACCCGGTTACCCCAACCAGCACCGGGGAGTGGAGTGTGCCTCCGCAAAATTTACAATCCTTATAAAAGCGGCCAGTGGAATTCAAAAAAAAAATCCCGGGCCCGGAAAAACCCCAAAAAATTTTTCCGGGGCACCAACAAATTATTTTCCGGGTCCAACCCCTGGGGGGCTTTCAAAAAAACAATTTTTTAGGCGGCCAATAAAAAACCCACAAACTTTTTGGAAAACCTTTACGTTTTGAACCCCAAAAAAACGGTGACACTTGGGGGGGGGGTTTTTAAAGGGGCGGCCCAAACCTTTTTGGGGGGGAAATGGCCCATTGGGGGGGAT] [+] EMBL BM617817 [CCGCCCACGCGTACGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGGAGGAGTAAAAATTATTATACCGCAAGCGTTCATTGTGTGCTCCCGATGGGCGCAAGTTTAGAGCTAAAAAGCCATTGCTTAATAGTAGTAGAAGTTTAAACTGATGCCTGCTCACTGATTCGCTTGTTGTAATAAATAGCCAGCGATTTAAGTTTCGGTGTGCATTGATTTTAAATCGTTAGCTTGGCTTGAAAATAGACACTCTTTGTAACGATACGAAAGCTATACGATGCGTGTGAGCATGTTTCGAACGTTATTGGGCGATCGCCCCTTAAATATGCACAATTTTTGAAACAATTGTTCTTTCGGCATGCGTAATTAAATAATACAAATCCTCCGACCCCCACCCAATAGAGAACTCCCAAAAAAAAAACCCGGTTACCCCAACCAGCACCGGGGAGTGGAGTGTGCCTCCGCAAAATTTACAATCCTTATAAAAGCGGCCAGTGGAATTCAAAAAAAAAATCCCGGGCCCGGAAAAACCCCAAAAAATTTTTCCGGGGCACCAACAAATTATTTTCCGGGTCCAACCCCTGGGGGGCTTTCAAAAAAACAATTTTTTAGGCGGCCAATAAAAAACCCACAAACTTTTTGGAAAACCTTTACGTTTTGAACCCCAAAAAAACGGTGACACTTGGGGGGGGGGTTTTTAAAGGGGCGGCCCAAACCTTTTTGGGGGGGAAATGGCCCATTGGGGGGGAT] consensusID : consensus_789#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence [AGCAGATCGGCCCGAGGATNGTAAACTAAAAATACAAAACANANTCAATGTTTCAACAAACAAAAACAAACAAATGCAACGATTGTGAGGCCGTTAAATGAAATGCTGCTTTTTAAGCGGCTAAATGGAAAAGTAATAAGCACAAAATACAAAACATAGTAATAGTAATCTACCTTTTTGGGAGAGGAGGAGTAAAAATTATTATACCGCAAGCGTTCATTGTGTGCTCCCGATGGGCGCAAGTTTAGAGCTAAAAAGCCATTGCTTAATAGTAGTAGAAGTTTAAACTGATGCCTGCTCACTGATTCGCTTGTTGTAATAAATAGCCAGCGATTTAAGTTTCGGTGTGCATTGATTTTAAATCGTTAGCTTGGCTTGAAAATAGACACTCTTTGTAACGATACGAAAGCTATACGATGCGTGTGAGCATGTTTCGAACGTTATTGGGCGATCGCCCCTTAAATATGCACAATTTCTGAAACAATTGTTCTTCGGCATGCGTAATTNAATAATACAAATCACTCCGACACACACCAATAGAGAACTCCGAAAGAAGAAAGACCAGTTAAGCAAACGAGCACCGTGAGTGAGTGTGCTCAGCAGAAT] [+] EMBL BX466305 [AGCAGATCGGCCCGAGGATNGTAAACTAAAAATACAAAACANANTCAATGTTTCAACAAACAAAAACAAACAAATGCAACGATTGTGAGGCCGTTAAATGAAATGCTGCTTTTTAAGCGGCTAAATGGAAAAGTAATAAGCACAAAATACAAAACATAGTAATAGTAATCTACCTTTTTGGGAGAGGAGGAGTAAAAATTATTATACCGCAAGCGTTCATTGTGTGCTCCCGATGGGCGCAAGTTTAGAGCTAAAAAGCCATTGCTTAATAGTAGTAGAAGTTTAAACTGATGCCTGCTCACTGATTCGCTTGTTGTAATAAATAGCCAGCGATTTAAGTTTCGGTGTGCATTGATTTTAAATCGTTAGCTTGGCTTGAAAATAGACACTCTTTGTAACGATACGAAAGCTATACGATGCGTGTGAGCATGTTTCGAACGTTATTGGGCGATCGCCCCTTAAATATGCACAATTTCTGAAACAATTGTTCTTCGGCATGCGTAATTNAATAATACAAATCACTCCGACACACACCAATAGAGAACTCCGAAAGAAGAAAGACCAGTTAAGCAAACGAGCACCGTGAGTGAGTGTGCTCAGCAGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_789#0 ------------------------------------------------------------ consensus_789#1 AGCAGATCGGCCCGAGGATNGTAAACTAAAAATACAAAACANANTCAATGTTTCAACAAA 60 consensus_789#0 ------------------------------------------------------------ consensus_789#1 CAAAAACAAACAAATGCAACGATTGTGAGGCCGTTAAATGAAATGCTGCTTTTTAAGCGG 120 consensus_789#0 -------------CCGCCCACGCGTACGCCCACGCGTCCGCCCACGCGTCCGCCCACGCG 47 consensus_789#1 CTAAATGGAAAAGTAATAAGCACAAAATACAAAACATAGTAATAGTAATCTACCTTTTTG 180 * * * * * * * * ** ** * consensus_789#0 TCCG-GGAGGAGTAAAAATTATTATACCGCAAGCGTTCATTGTGTGCTCCCGATGGGCGC 106 consensus_789#1 GGAGAGGAGGAGTAAAAATTATTATACCGCAAGCGTTCATTGTGTGCTCCCGATGGGCGC 240 * ******************************************************* consensus_789#0 AAGTTTAGAGCTAAAAAGCCATTGCTTAATAGTAGTAGAAGTTTAAACTGATGCCTGCTC 166 consensus_789#1 AAGTTTAGAGCTAAAAAGCCATTGCTTAATAGTAGTAGAAGTTTAAACTGATGCCTGCTC 300 ************************************************************ consensus_789#0 ACTGATTCGCTTGTTGTAATAAATAGCCAGCGATTTAAGTTTCGGTGTGCATTGATTTTA 226 consensus_789#1 ACTGATTCGCTTGTTGTAATAAATAGCCAGCGATTTAAGTTTCGGTGTGCATTGATTTTA 360 ************************************************************ consensus_789#0 AATCGTTAGCTTGGCTTGAAAATAGACACTCTTTGTAACGATACGAAAGCTATACGATGC 286 consensus_789#1 AATCGTTAGCTTGGCTTGAAAATAGACACTCTTTGTAACGATACGAAAGCTATACGATGC 420 ************************************************************ consensus_789#0 GTGTGAGCATGTTTCGAACGTTATTGGGCGATCGCCCCTTAAATATGCACAATTTTTGAA 346 consensus_789#1 GTGTGAGCATGTTTCGAACGTTATTGGGCGATCGCCCCTTAAATATGCACAATTTCTGAA 480 ******************************************************* **** consensus_789#0 ACAATTGTTCTTTCGGCATGCGTAATTAAATAATACAAATC-CTCCGACCCCCACCCAAT 405 consensus_789#1 ACAATTGTTCTT-CGGCATGCGTAATTNAATAATACAAATCACTCCGACACACACC-AAT 538 ************ ************** ************* ******* * **** *** consensus_789#0 AGAGAACTCCCAAAAAAAAAAC-CCGGTTACCCCAACCAGCACCGGGGAGTGGAGTGTGC 464 consensus_789#1 AGAGAACTCCGAAAGAAGAAAGACCAGTTAAGCAAACGAGCACCGTG-AGTG-AGTGTGC 596 ********** *** ** *** ** **** * *** ******* * **** ******* consensus_789#0 CTCCGCAAAATTTACAATCCTTATAAAAGCGGCCAGTGGAATTCAAAAAAAAAATCCCGG 524 consensus_789#1 -TCAGCAGAAT------------------------------------------------- 606 ** *** *** consensus_789#0 GCCCGGAAAAACCCCAAAAAATTTTTCCGGGGCACCAACAAATTATTTTCCGGGTCCAAC 584 consensus_789#1 ------------------------------------------------------------ consensus_789#0 CCCTGGGGGGCTTTCAAAAAAACAATTTTTTAGGCGGCCAATAAAAAACCCACAAACTTT 644 consensus_789#1 ------------------------------------------------------------ consensus_789#0 TTGGAAAACCTTTACGTTTTGAACCCCAAAAAAACGGTGACACTTGGGGGGGGGGTTTTT 704 consensus_789#1 ------------------------------------------------------------ consensus_789#0 AAAGGGGCGGCCCAAACCTTTTTGGGGGGGAAATGGCCCATTGGGGGGGAT 755 consensus_789#1 --------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||