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Anopheles gambiae
cluster # 789 cluster # 789       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_789#0 length = 755 sequences # 1  
consensus_789#1 length = 606 sequences # 1  

consensusID : consensus_789#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 755
fasta sequence
                              [CCGCCCACGCGTACGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGGAGGAGTAAAAATTATTATACCGCAAGCGTTCATTGTGTGCTCCCGATGGGCGCAAGTTTAGAGCTAAAAAGCCATTGCTTAATAGTAGTAGAAGTTTAAACTGATGCCTGCTCACTGATTCGCTTGTTGTAATAAATAGCCAGCGATTTAAGTTTCGGTGTGCATTGATTTTAAATCGTTAGCTTGGCTTGAAAATAGACACTCTTTGTAACGATACGAAAGCTATACGATGCGTGTGAGCATGTTTCGAACGTTATTGGGCGATCGCCCCTTAAATATGCACAATTTTTGAAACAATTGTTCTTTCGGCATGCGTAATTAAATAATACAAATCCTCCGACCCCCACCCAATAGAGAACTCCCAAAAAAAAAACCCGGTTACCCCAACCAGCACCGGGGAGTGGAGTGTGCCTCCGCAAAATTTACAATCCTTATAAAAGCGGCCAGTGGAATTCAAAAAAAAAATCCCGGGCCCGGAAAAACCCCAAAAAATTTTTCCGGGGCACCAACAAATTATTTTCCGGGTCCAACCCCTGGGGGGCTTTCAAAAAAACAATTTTTTAGGCGGCCAATAAAAAACCCACAAACTTTTTGGAAAACCTTTACGTTTTGAACCCCAAAAAAACGGTGACACTTGGGGGGGGGGTTTTTAAAGGGGCGGCCCAAACCTTTTTGGGGGGGAAATGGCCCATTGGGGGGGAT]

[+] EMBL BM617817             [CCGCCCACGCGTACGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGGAGGAGTAAAAATTATTATACCGCAAGCGTTCATTGTGTGCTCCCGATGGGCGCAAGTTTAGAGCTAAAAAGCCATTGCTTAATAGTAGTAGAAGTTTAAACTGATGCCTGCTCACTGATTCGCTTGTTGTAATAAATAGCCAGCGATTTAAGTTTCGGTGTGCATTGATTTTAAATCGTTAGCTTGGCTTGAAAATAGACACTCTTTGTAACGATACGAAAGCTATACGATGCGTGTGAGCATGTTTCGAACGTTATTGGGCGATCGCCCCTTAAATATGCACAATTTTTGAAACAATTGTTCTTTCGGCATGCGTAATTAAATAATACAAATCCTCCGACCCCCACCCAATAGAGAACTCCCAAAAAAAAAACCCGGTTACCCCAACCAGCACCGGGGAGTGGAGTGTGCCTCCGCAAAATTTACAATCCTTATAAAAGCGGCCAGTGGAATTCAAAAAAAAAATCCCGGGCCCGGAAAAACCCCAAAAAATTTTTCCGGGGCACCAACAAATTATTTTCCGGGTCCAACCCCTGGGGGGCTTTCAAAAAAACAATTTTTTAGGCGGCCAATAAAAAACCCACAAACTTTTTGGAAAACCTTTACGTTTTGAACCCCAAAAAAACGGTGACACTTGGGGGGGGGGTTTTTAAAGGGGCGGCCCAAACCTTTTTGGGGGGGAAATGGCCCATTGGGGGGGAT]


>consensus_789#0 CCGCCCACGCGTACGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGGAGGAGTA AAAATTATTATACCGCAAGCGTTCATTGTGTGCTCCCGATGGGCGCAAGTTTAGAGCTAA AAAGCCATTGCTTAATAGTAGTAGAAGTTTAAACTGATGCCTGCTCACTGATTCGCTTGT TGTAATAAATAGCCAGCGATTTAAGTTTCGGTGTGCATTGATTTTAAATCGTTAGCTTGG CTTGAAAATAGACACTCTTTGTAACGATACGAAAGCTATACGATGCGTGTGAGCATGTTT CGAACGTTATTGGGCGATCGCCCCTTAAATATGCACAATTTTTGAAACAATTGTTCTTTC GGCATGCGTAATTAAATAATACAAATCCTCCGACCCCCACCCAATAGAGAACTCCCAAAA AAAAAACCCGGTTACCCCAACCAGCACCGGGGAGTGGAGTGTGCCTCCGCAAAATTTACA ATCCTTATAAAAGCGGCCAGTGGAATTCAAAAAAAAAATCCCGGGCCCGGAAAAACCCCA AAAAATTTTTCCGGGGCACCAACAAATTATTTTCCGGGTCCAACCCCTGGGGGGCTTTCA AAAAAACAATTTTTTAGGCGGCCAATAAAAAACCCACAAACTTTTTGGAAAACCTTTACG TTTTGAACCCCAAAAAAACGGTGACACTTGGGGGGGGGGTTTTTAAAGGGGCGGCCCAAA CCTTTTTGGGGGGGAAATGGCCCATTGGGGGGGAT



consensusID : consensus_789#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 606
fasta sequence
                              [AGCAGATCGGCCCGAGGATNGTAAACTAAAAATACAAAACANANTCAATGTTTCAACAAACAAAAACAAACAAATGCAACGATTGTGAGGCCGTTAAATGAAATGCTGCTTTTTAAGCGGCTAAATGGAAAAGTAATAAGCACAAAATACAAAACATAGTAATAGTAATCTACCTTTTTGGGAGAGGAGGAGTAAAAATTATTATACCGCAAGCGTTCATTGTGTGCTCCCGATGGGCGCAAGTTTAGAGCTAAAAAGCCATTGCTTAATAGTAGTAGAAGTTTAAACTGATGCCTGCTCACTGATTCGCTTGTTGTAATAAATAGCCAGCGATTTAAGTTTCGGTGTGCATTGATTTTAAATCGTTAGCTTGGCTTGAAAATAGACACTCTTTGTAACGATACGAAAGCTATACGATGCGTGTGAGCATGTTTCGAACGTTATTGGGCGATCGCCCCTTAAATATGCACAATTTCTGAAACAATTGTTCTTCGGCATGCGTAATTNAATAATACAAATCACTCCGACACACACCAATAGAGAACTCCGAAAGAAGAAAGACCAGTTAAGCAAACGAGCACCGTGAGTGAGTGTGCTCAGCAGAAT]

[+] EMBL BX466305             [AGCAGATCGGCCCGAGGATNGTAAACTAAAAATACAAAACANANTCAATGTTTCAACAAACAAAAACAAACAAATGCAACGATTGTGAGGCCGTTAAATGAAATGCTGCTTTTTAAGCGGCTAAATGGAAAAGTAATAAGCACAAAATACAAAACATAGTAATAGTAATCTACCTTTTTGGGAGAGGAGGAGTAAAAATTATTATACCGCAAGCGTTCATTGTGTGCTCCCGATGGGCGCAAGTTTAGAGCTAAAAAGCCATTGCTTAATAGTAGTAGAAGTTTAAACTGATGCCTGCTCACTGATTCGCTTGTTGTAATAAATAGCCAGCGATTTAAGTTTCGGTGTGCATTGATTTTAAATCGTTAGCTTGGCTTGAAAATAGACACTCTTTGTAACGATACGAAAGCTATACGATGCGTGTGAGCATGTTTCGAACGTTATTGGGCGATCGCCCCTTAAATATGCACAATTTCTGAAACAATTGTTCTTCGGCATGCGTAATTNAATAATACAAATCACTCCGACACACACCAATAGAGAACTCCGAAAGAAGAAAGACCAGTTAAGCAAACGAGCACCGTGAGTGAGTGTGCTCAGCAGAAT]


>consensus_789#1 AGCAGATCGGCCCGAGGATNGTAAACTAAAAATACAAAACANANTCAATGTTTCAACAAA CAAAAACAAACAAATGCAACGATTGTGAGGCCGTTAAATGAAATGCTGCTTTTTAAGCGG CTAAATGGAAAAGTAATAAGCACAAAATACAAAACATAGTAATAGTAATCTACCTTTTTG GGAGAGGAGGAGTAAAAATTATTATACCGCAAGCGTTCATTGTGTGCTCCCGATGGGCGC AAGTTTAGAGCTAAAAAGCCATTGCTTAATAGTAGTAGAAGTTTAAACTGATGCCTGCTC ACTGATTCGCTTGTTGTAATAAATAGCCAGCGATTTAAGTTTCGGTGTGCATTGATTTTA AATCGTTAGCTTGGCTTGAAAATAGACACTCTTTGTAACGATACGAAAGCTATACGATGC GTGTGAGCATGTTTCGAACGTTATTGGGCGATCGCCCCTTAAATATGCACAATTTCTGAA ACAATTGTTCTTCGGCATGCGTAATTNAATAATACAAATCACTCCGACACACACCAATAG AGAACTCCGAAAGAAGAAAGACCAGTTAAGCAAACGAGCACCGTGAGTGAGTGTGCTCAG CAGAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_789#0      ------------------------------------------------------------
consensus_789#1      AGCAGATCGGCCCGAGGATNGTAAACTAAAAATACAAAACANANTCAATGTTTCAACAAA 60
                                                                                 

consensus_789#0      ------------------------------------------------------------
consensus_789#1      CAAAAACAAACAAATGCAACGATTGTGAGGCCGTTAAATGAAATGCTGCTTTTTAAGCGG 120
                                                                                 

consensus_789#0      -------------CCGCCCACGCGTACGCCCACGCGTCCGCCCACGCGTCCGCCCACGCG 47
consensus_789#1      CTAAATGGAAAAGTAATAAGCACAAAATACAAAACATAGTAATAGTAATCTACCTTTTTG 180
                                         * *  *   * *  * *      *    **  **     *

consensus_789#0      TCCG-GGAGGAGTAAAAATTATTATACCGCAAGCGTTCATTGTGTGCTCCCGATGGGCGC 106
consensus_789#1      GGAGAGGAGGAGTAAAAATTATTATACCGCAAGCGTTCATTGTGTGCTCCCGATGGGCGC 240
                        * *******************************************************

consensus_789#0      AAGTTTAGAGCTAAAAAGCCATTGCTTAATAGTAGTAGAAGTTTAAACTGATGCCTGCTC 166
consensus_789#1      AAGTTTAGAGCTAAAAAGCCATTGCTTAATAGTAGTAGAAGTTTAAACTGATGCCTGCTC 300
                     ************************************************************

consensus_789#0      ACTGATTCGCTTGTTGTAATAAATAGCCAGCGATTTAAGTTTCGGTGTGCATTGATTTTA 226
consensus_789#1      ACTGATTCGCTTGTTGTAATAAATAGCCAGCGATTTAAGTTTCGGTGTGCATTGATTTTA 360
                     ************************************************************

consensus_789#0      AATCGTTAGCTTGGCTTGAAAATAGACACTCTTTGTAACGATACGAAAGCTATACGATGC 286
consensus_789#1      AATCGTTAGCTTGGCTTGAAAATAGACACTCTTTGTAACGATACGAAAGCTATACGATGC 420
                     ************************************************************

consensus_789#0      GTGTGAGCATGTTTCGAACGTTATTGGGCGATCGCCCCTTAAATATGCACAATTTTTGAA 346
consensus_789#1      GTGTGAGCATGTTTCGAACGTTATTGGGCGATCGCCCCTTAAATATGCACAATTTCTGAA 480
                     ******************************************************* ****

consensus_789#0      ACAATTGTTCTTTCGGCATGCGTAATTAAATAATACAAATC-CTCCGACCCCCACCCAAT 405
consensus_789#1      ACAATTGTTCTT-CGGCATGCGTAATTNAATAATACAAATCACTCCGACACACACC-AAT 538
                     ************ ************** ************* ******* * **** ***

consensus_789#0      AGAGAACTCCCAAAAAAAAAAC-CCGGTTACCCCAACCAGCACCGGGGAGTGGAGTGTGC 464
consensus_789#1      AGAGAACTCCGAAAGAAGAAAGACCAGTTAAGCAAACGAGCACCGTG-AGTG-AGTGTGC 596
                     ********** *** ** ***  ** ****  * *** ******* * **** *******

consensus_789#0      CTCCGCAAAATTTACAATCCTTATAAAAGCGGCCAGTGGAATTCAAAAAAAAAATCCCGG 524
consensus_789#1      -TCAGCAGAAT------------------------------------------------- 606
                      ** *** ***                                                 

consensus_789#0      GCCCGGAAAAACCCCAAAAAATTTTTCCGGGGCACCAACAAATTATTTTCCGGGTCCAAC 584
consensus_789#1      ------------------------------------------------------------
                                                                                 

consensus_789#0      CCCTGGGGGGCTTTCAAAAAAACAATTTTTTAGGCGGCCAATAAAAAACCCACAAACTTT 644
consensus_789#1      ------------------------------------------------------------
                                                                                 

consensus_789#0      TTGGAAAACCTTTACGTTTTGAACCCCAAAAAAACGGTGACACTTGGGGGGGGGGTTTTT 704
consensus_789#1      ------------------------------------------------------------
                                                                                 

consensus_789#0      AAAGGGGCGGCCCAAACCTTTTTGGGGGGGAAATGGCCCATTGGGGGGGAT 755
consensus_789#1      ---------------------------------------------------
                                                                        




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)