These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7897#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 686 fasta sequence [GATAAGATAGCTTTCATGACGGTGCGTGTCCATCAACATCCATAGAGACACGGTAAGAGAATAAGGTCATCAAGGAGAACAATCCGATGAACGGTTGAATTGAATTTGATTGATCTCGTTCATCCGTGTTTTTTTTTCTTTGTAGGTTGCAAACCCCGATCCCGACGAACAAGGCCGGACGCGCGAATCCTCTCCTCAGTCGCAGGCAAGATGTCTGGTGCTGCCGCCGTGGATGGAGCCGCCCGGTACGACCATTACCGGCTGTACCGTGTCGAGCTGGCGACGGACGAGCAGGTGCAGCTGTTCCAGCAGCTTGAGGCGAAGAGCGACAGCTGCACCTTTTACGGCCATGCGCGGCAACCGGGCCAGCAGCTCACGATCATGTTGTCCGCCAGCAAGGTCGCGCACTTTGAGGATCTGCTCGCGCTACACGCAGTGAGCGGGCGCGTGCTCGAGCGCAACATGCAGCAGCTGATCGAGCGGGAAGCGGCCACGGTACAGCCGGCCAGCACCGACCCGAGCCAGATGGACTGGGACCACTACTTTCAGCTCGAGACGATATACGCCTGGATGGAGCTGCTGGCGGAACGCTTCCCGGGCGCGGTCAGCACGCTCGACATCGGCACCAGTTACGAGGGGCGCCCGATCAGGGGAGTGAAGCTGTCGCGCCGTCCCGGCAACAAAGC] [+] EMBL BX610398 [GATAAGATAGCTTTCATGACGGTGCGTGTCCATCAACATCCATAGAGACACGGTAAGAGAATAAGGTCATCAAGGAGAACAATCCGATGAACGGTTGAATTGAATTTGATTGATCTCGTTCATCCGTGTTTTTTTTTCTTTGTAGGTTGCAAACCCCGATCCCGACGAACAAGGCCGGACGCGCGAATCCTCTCCTCAGTCGCAGGCAAGATGTCTGGTGCTGCCGCCGTGGATGGAGCCGCCCGGTACGACCATTACCGGCTGTACCGTGTCGAGCTGGCGACGGACGAGCAGGTGCAGCTGTTCCAGCAGCTTGAGGCGAAGAGCGACAGCTGCACCTTTTACGGCCATGCGCGGCAACCGGGCCAGCAGCTCACGATCATGTTGTCCGCCAGCAAGGTCGCGCACTTTGAGGATCTGCTCGCGCTACACGCAGTGAGCGGGCGCGTGCTCGAGCGCAACATGCAGCAGCTGATCGAGCGGGAAGCGGCCACGGTACAGCCGGCCAGCACCGACCCGAGCCAGATGGACTGGGACCACTACTTTCAGCTCGAGACGATATACGCCTGGATGGAGCTGCTGGCGGAACGCTTCCCGGGCGCGGTCAGCACGCTCGACATCGGCACCAGTTACGAGGGGCGCCCGATCAGGGGAGTGAAGCTGTCGCGCCGTCCCGGCAACAAAGC] [+] EMBL BX620917 [ CCTCAGTCGCAGGTAAGATGNCTGGTGCTGCCGCCGNGGATGGAGGCGCCCGGTACGACCATTACCGGNTGTACCGTGTCGAGCTGGCGACNGACGAGC ] consensusID : consensus_7897#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 639 fasta sequence [CCGGTCTCTTGGTATTTCGACACTGCAAATGGAGATTGTCTTACAGGTCTGGTGGTGATTCCTTTTTTTTAATATAAGACAAACGTACAGAGAGATAAGATAGCTTTCATGACGGTGCGTGTCCATCAACATCCATAGAGACACGGTTGCAAACCCCGATCCCAACGAACAAGGCCGGACGCGCGAATCCTCTGCTCAGTCGCAGGCAAGATGTCTGGTGCTGCCGCCGCGGATGGAGCCGCCCGGTACGACCATTACCGGCTGTACCGTGTCGAGCTGGCGACGGACGAGCAGGTGCAGCTGTTCCAGCAGCTCGAGGCGAAGAGCGACAGCTGCACCTTTTACGGCCATGCGCGGCAACCGGGCCAGCAGCT-CACGATCATGGTGTCCGCCAGCAAGGTCGCGGACTTTGAGGATCTGCTCGCGCTACACGCAGTGAG-CGGGCGCGTGCTCGAGCGCAACATGCAGCAGCTGATCGAGCGGGAAGCGGCCACGGTACAGCCGGCCAGCACCGACCCGAACCAGATGGACTGGGAGCACTACTTTCAGCTCGAGACGATTTACGCCTGGATGGAGCTGCTGGCGGAACGCTTTCCGGGCGCGGTCAGCACGCTCGACATCGGCACCAGTTACGAGGGG] [+] EMBL BM621710 [CCGGTCTCTTGGTATTTCGACACTGCAAATGGAGATTGTCTTACAGGTCTGGTGGTGATTCCTTTTTTTTAATATAAGACAAACGTACAGAGAGATAAGATAGCTTTCATGACGGTGCGTGTCCATCAACATCCATAGAGACACGGTTGCAAACCCCGATCCCAACGAACAAGGCCGGACGCGCGAATCCTCTGCTCAGTCGCAGGCAAGATGTCTGGTGCTGCCGCCGCGGATGGAGCCGCCCGGTACGACCATTACCGGCTGTACCGTGTCGAGCTGGCGACGGACGAGCAGGTGCAGCTGTTCCAGCAGCTCGAGGCGAAGAGCGACAGCTGCACCTTTTACGGCCATGCGCGGCAACCGGGCCAGCAGCT CACGATCATGGTGTCCGCCAGCAAGGTCGCGGACTTTGAGGATCTGCTCGCGCTACACGCAGTGAG CGGGCGCGTGCTCGAGCGCAACATGCAGCAGCTGATCGAGCGGGAAGCGGCCACGGTACAGCCGGCCAGCACCGACCCGAACCAGATGGACTGGGAGCACTACTTTCAGCTCGAGACGATTTACGCCTGGATGGAGCTGCTGGCGGAA ] [+] EMBL BM638567 [ ccgGTCTTACAGGTCTGGTGGTGATTCCTTTTTTTTAATATAAGACAAACGTACAGAGAGATAAGATAGCTTTCATGACGGTGCGTGTCCATCAACATCCATAGAGACACGGTTGCAAACCCCGATCCCAACGAACAAGGCCGGACGCGCGAATCCTCTGCTCAGTCGCAGGCAAGATGTCTGGTGCTGCCGCCGCGGATGGAGCCGCCCGGTACGACCATTACCGGCTGTACCGTGTCGAGCTGGCGACGGACGAGCAGGTGCAGCTGTTCCAGCAGCTCGAGGCGAAGAGCGACAGCTGCACCTTTTACGGCCATGCGCGGCAACCGGGCCAGCAGCT CACGATCATGGTGTCCGCCAGCAAGGTCGCGGACTTTGAGGATCTGCTCGCGCTACACGCAGTGAG CGGGCGCGTGCTCGAGCGCAACATGCAGCAGCTGATCGAGCGGGAAGCGGCCACGGTACAGCCGGCCAGCACCGACCCGAACCAGATGGACTGGGAGCACTACTTTCAGCTCGAGACGATTTACGCCTGGATGGAGCTGCTGGCGGAACGCTTTCCGGGCGCGGT ] [+] EMBL BX623708 [ TCATGACGGTGCGTGTCCATCAACATCCATAGAGACACGGTTGCAAACCCCGATCCCGACGAACAAGGCCGGACGCGCGAATCCTCTCCTCAGTCGCAGGNAAGATGTCTGGTGCTGCCGCCGTGGATGGAGCCGCCCGGTACGACCATTACCGGCTGTACCGTGTCGAGCTGGCGACGGACGAGCAGGTGCAGCTGTTCCAGCAGCTTGAGGCGAAGAGCGACAGCTGCACCTTTTACGGCCATGCGCGGCAACNGGGCCAGCAGCT CACGATNATGGTGTCCGCCAGCNAGGTCGCGGACTTTGAGGATCTGCTCGCGCTACACGCAGTGAG CGGGCGCGTGCTCGAGCGCAACATGCAGCANCTGATCGAGCGGGAAGCGGCCACGGTACAGCCGGCCAGCACCGACCCGAGCCANATGGACTGGGACCACTACTTTCAGCTCGAGACGATATACGCCTGGATGGAGCTGCTGGCGGAACGCTTCCCGGGCGCGGTCAGCACGCTCGACATCGGCACCAGTTACGAGGGG] [+] EMBL CNS096A3 [ CGGTTGCAAA CCCGATCCCAACGAACAAGGCCGGACGCGCGAATCCTCTGCTCAGTCGCAGGCAAGATGTCTGGTGCTGCCGCCGCGGATGGAGCCGCCCGGTACGACCATTACCGGCTGTACCGTGTCGAGCTGGCGACGGACGAGCAGGTGCAGCTGTTCCAGCAGCTCGAGGCGAAGAGCGACAGCTGCACCTTTTACGGCCATGCGCGGCAACCGGGCCAGCAGCTCCACGATCATGGTGTCCGCCAGCAAGGTCGCGGACTTTGAGGATCTGCTCGCGCTACACGCAGTAAGCCGGGCGCGTGC ] consensusID : consensus_7897#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 232 fasta sequence [NAGACCAGAAATCGGCACGAGGNGTTTATACTCACTGTTTCGCCGCTTATCNCCAAGGTGCTGCCGCCGTGGATGGAGCCGCCCGGTACGACCATTACCGGCTGTACCGTGTCGAGCTGGCGACGGACGAGCAGGTTCAGCTGTTCCAGCAGCTTGAGGCGAAGAGCGACAGCTGTGNACCGTTTACTGGCCAATGCTGCGGNAANCCGGGTNCAGGCAGCTCACGAGTCAA] [+] EMBL BX469496 [NAGACCAGAAATCGGCACGAGGNGTTTATACTCACTGTTTCGCCGCTTATCNCCAAGGTGCTGCCGCCGTGGATGGAGCCGCCCGGTACGACCATTACCGGCTGTACCGTGTCGAGCTGGCGACGGACGAGCAGGTTCAGCTGTTCCAGCAGCTTGAGGCGAAGAGCGACAGCTGTGNACCGTTTACTGGCCAATGCTGCGGNAANCCGGGTNCAGGCAGCTCACGAGTCAA] consensusID : consensus_7897#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 214 fasta sequence [GGTTAAAAAAACAAGAATTTCCTTCAAGCCGTGCTGTTTACACTAATACCTCCACTGGTTTCGCCGCTTTTCCAAGGGTGCTGCCGCCGTGGATGGAGCCGCCCGGTACGACCATTACCGGCTGTACCCGGTGTCCGAGCTGGCGACGGACGAGCAGGTGCAGCCTGGTTCCAGCAGCTTGGAGGCGAAGAGCGACAGCTGGCCACCTTTTACG] [+] EMBL AL934530 [GGTTAAAAAAACAAGAATTTCCTTCAAGCCGTGCTGTTTACACTAATACCTCCACTGGTTTCGCCGCTTTTCCAAGGGTGCTGCCGCCGTGGATGGAGCCGCCCGGTACGACCATTACCGGCTGTACCCGGTGTCCGAGCTGGCGACGGACGAGCAGGTGCAGCCTGGTTCCAGCAGCTTGGAGGCGAAGAGCGACAGCTGGCCACCTTTTACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7897#2 ------------------------------------------------------------ consensus_7897#3 ------------------------------------------------------------ consensus_7897#0 --GATAAGATAGCTTTCATGACGGTGCGTGTCCATCAACATCCATAGAGACACGGTAAGA 58 consensus_7897#1 CCGGTCTCTTGGTATTT-CGACACTGCAAATGGA--GATTGTCTTACAGGTCTGGTGGTG 57 consensus_7897#2 ------------------------------------------------------------ consensus_7897#3 ------------------------------------------------------------ consensus_7897#0 GAATAAGGTCATCAAGG-AGAACAATCCGATGAACGGTTGAATTGAATTTGATTGATCTC 117 consensus_7897#1 ATTCCTTTTTTTTAATATAAGACAAACGTACAGAGAGATAAGATAGCTTTCAT-GACGGT 116 consensus_7897#2 ---------------------------NAGACCAGAAAT-----CGGCACGAGGN-GTTT 27 consensus_7897#3 --------------------GGTTAAAAAAACAAGAATTTCCTTCAAGCCGTGCT-GTTT 39 consensus_7897#0 GTTCATCCGTGTTTTTTTTTCTTTGTA-GGTTGCAAACCCCGATCCCGACGAACAAGGCC 176 consensus_7897#1 GCGTGTCCATCAACATCCATAGAGACACGGTTGCAAACCCCGATCCCAACGAACAAGGCC 176 ** * ** * consensus_7897#2 ATACT--------CACTG-TT--TCGCCGCTTATCNCCAAGGTGCTGCCGCCGTGGATGG 76 consensus_7897#3 ACACTAATACCTCCACTGGTT--TCGCCGCTT-TTCCAAGGGTGCTGCCGCCGTGGATGG 96 consensus_7897#0 GGACGCGCGAATCCTCTCCTCAGTCGCAGGCAAGATGTCTGGTGCTGCCGCCGTGGATGG 236 consensus_7897#1 GGACGCGCGAATCCTCTGCTCAGTCGCAGGCAAGATGTCTGGTGCTGCCGCCGCGGATGG 236 ** * ** * **** * ************* ****** consensus_7897#2 AGCCGCCCGGTACGACCATTACCGGCTGTACC--GTGTC-GAGCTGGCGACGGACGAGCA 133 consensus_7897#3 AGCCGCCCGGTACGACCATTACCGGCTGTACCCGGTGTCCGAGCTGGCGACGGACGAGCA 156 consensus_7897#0 AGCCGCCCGGTACGACCATTACCGGCTGTACC--GTGTC-GAGCTGGCGACGGACGAGCA 293 consensus_7897#1 AGCCGCCCGGTACGACCATTACCGGCTGTACC--GTGTC-GAGCTGGCGACGGACGAGCA 293 ******************************** ***** ******************** consensus_7897#2 GGTTCAGCT--GTTCCAGCAGCTTG-AGGCGAAGAGCGACAGCTGTGNACCGTTTACTGG 190 consensus_7897#3 GGTGCAGCCTGGTTCCAGCAGCTTGGAGGCGAAGAGCGACAGCTGGCCACCTTTTACG-- 214 consensus_7897#0 GGTGCAGCT--GTTCCAGCAGCTTG-AGGCGAAGAGCGACAGCTG--CACCTTTTACGGC 348 consensus_7897#1 GGTGCAGCT--GTTCCAGCAGCTCG-AGGCGAAGAGCGACAGCTG--CACCTTTTACGGC 348 *** **** ************ * ******************* *** ***** consensus_7897#2 CCAATGCTGCGGNAANCCGGGTNCAGGCAGCTCACGAGTCAA------------------ 232 consensus_7897#3 ------------------------------------------------------------ consensus_7897#0 CATGCGCGGCAACCGGGCCAGCAGCTCACGATCATGTTGTCCGCCAGCAAGGTCGCGCAC 408 consensus_7897#1 CATGCGCGGCAACCGGGCCAGCAGCTCACGATCATGGTGTCCGCCAGCAAGGTCGCGGAC 408 consensus_7897#2 ------------------------------------------------------------ consensus_7897#3 ------------------------------------------------------------ consensus_7897#0 TTTGAGGATCTGCTCGCGCTACACGCAGTGAGCGGGCGCGTGCTCGAGCGCAACATGCAG 468 consensus_7897#1 TTTGAGGATCTGCTCGCGCTACACGCAGTGAGCGGGCGCGTGCTCGAGCGCAACATGCAG 468 consensus_7897#2 ------------------------------------------------------------ consensus_7897#3 ------------------------------------------------------------ consensus_7897#0 CAGCTGATCGAGCGGGAAGCGGCCACGGTACAGCCGGCCAGCACCGACCCGAGCCAGATG 528 consensus_7897#1 CAGCTGATCGAGCGGGAAGCGGCCACGGTACAGCCGGCCAGCACCGACCCGAACCAGATG 528 consensus_7897#2 ------------------------------------------------------------ consensus_7897#3 ------------------------------------------------------------ consensus_7897#0 GACTGGGACCACTACTTTCAGCTCGAGACGATATACGCCTGGATGGAGCTGCTGGCGGAA 588 consensus_7897#1 GACTGGGAGCACTACTTTCAGCTCGAGACGATTTACGCCTGGATGGAGCTGCTGGCGGAA 588 consensus_7897#2 ------------------------------------------------------------ consensus_7897#3 ------------------------------------------------------------ consensus_7897#0 CGCTTCCCGGGCGCGGTCAGCACGCTCGACATCGGCACCAGTTACGAGGGGCGCCCGATC 648 consensus_7897#1 CGCTTTCCGGGCGCGGTCAGCACGCTCGACATCGGCACCAGTTACGAGGGG--------- 639 consensus_7897#2 -------------------------------------- consensus_7897#3 -------------------------------------- consensus_7897#0 AGGGGAGTGAAGCTGTCGCGCCGTCCCGGCAACAAAGC 686 consensus_7897#1 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||