cluster # 7898

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Anopheles gambiae
cluster # 7898 cluster # 7898 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7898#0 length = 623 sequences # 3

consensus_7898#1 length = 606 sequences # 3
consensus_7898#2 length = 564 sequences # 2

consensusID : consensus_7898#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 623
fasta sequence

                              [GAATCACAAAAAAACGCTCGAAGTAAGCAAAATGACTATCAAGCTCTGTTGGGTCTTTGCTGCCCTTGGATTGATTTGGCTGCTGCAGATCTCCCCATGCGACGCCACGCCAAGGCACGCGAAGCAATTAATTTCCTACTTCAAGCGCATGAAGCTGGACCAAACGAAGAACCGAGTCTACCAGCATGATGTGAAGAACGGGCTTCGTGTGCATCTGCGTGGGCCTCTTCTGCAGAAAGCGTTATGTTTACCCAAAGGCACAAAGCTTTCATCCGATTGTTCTGAACCGTATGGTCGATAAGGCACGGCAGCACGAGAACAAATTTTACGCACAATTCACATACGCCTGCAAGACAAATGCCGAGTATTCCGCCAAATGTTTAGACACGGGGCGACCCGTGTACTATCGCGCTCTGAAGAAACTTGCCAAAGAAACGGAGCGGTGTTGGAAATTTTGATTCGATGCTTACAAATAGGAACCATCGAAATGGAAACAATGATGATTAAATAATCAAACCATTCTTCGCAAAATGTTTGCCTGACAATCGATTTCNGCGAAAGAGTGGGGATTGGAAATAAATTTATCTTTTCTTTTCGTTTCCCTTAAAAAAAAAAAAAAAAAA]

[+] EMBL AF457556             [GAATCACAAAAAAACGCTCGAAGTAAGCAAAATGACTATCAAGCTCTGTTGGGTCTTTGCTGCCCTTGGATTGATTTGGCTGCTGCAGATCTCCCCATGCGACGCCACGCCAAGGCACGCGAAGCAATTAATTTCCTACTTCAAGCGCATGAAGCTGGACCAAACGAAGAACCGAGTCTACCAGCATGATGTGAAGAACGGGCTTCGTGTGCATCTGCGTGGGCCTCTTCTGCAGAAAGCGTTATGTTTACCCAAAGGCACAAAGCTTTCATCCGATTGTTCTGAACCGTATGGTCGATAAGGCACGGCAGCACGAGAACAAATTTTACGCACAATTCACATACGCCTGCAAGACAAATGCCGAGTATTCCGCCAAATGTTTAGACACGGGGCGACCCGTGTACTATCGCGCTCTGAAGAAACTTGCCAAAGAAACGGAGCGGTGTTGGAAATTTTGATTCGATGCTTACAAATAGGAACCATCGAAATGGAAACAATGATGATTAAATAATCAAACCATTCTTCGCAAAATGTTTGCCTGACAATCGATTTCGGCGAAAGAGTTGGGATTGGAAATACATTTATCTTTTCTTTTCGTTTCCCTTAAAAAAAAAAAAAAAAAA]
[+] EMBL CF541699             [           AAACGCTCGAAGTAAGCAAAATGACTATCAAGCTCTGTTGGGTCTTTGCTGCCCTTGGATTGATTTGGCTGCTGCAGATCTCCCCATGCGACGCCACGCCAAGGCACGCGAAGCAATTAATTTCCTACTTCAAGCGCATGAAGCTGGACCAAACGAAGAACCGAGTCTACCAGCATGATGTGAAGAACGGGCTTCGTGTGCATCTGCGTGGGCCTCTTCTGCAGAAAGCGTTATGTTTACCCAAAGGCACAAAGCTTTCATCCGATTGTTCTGAACCGTATGGTCGATAAGGCACGGCAGCACGAGAACAAATTTTACGCACAATTCACATACGCCTGCAAGACAAATGCCGAGTATTCCGCCAAATGTTTAGACACGGGGCGACCCGTGTACTATCGCGCTCTGAAGAAACTTGCCAAAGAAACGGAGCGGTGTTGGAAATTTTGATTCGATGCTTACAAATAGGAACCATCGAAATGGAAACAATGATGATTAAATAATCAAACCATTCTTCGCAAAATGTTTGCCTGACAATCGATTTCNGCGAAAGAGTGGGGATTGGAAATAAATTTATCTTTTCTTTTCGTTTCNNNTAAAAAAAAAA        ]
[+] EMBL CF541611             [           AAACGCTCGAAGTAAGTAAAATGACTATTAAGCTCTGTTGGGTCTTTGCTGCCCTTGGATTGATTTGGCTGCTGCAGATCTCCCCACGCGACGCCACGCCAAGGCACGCGAAGCAATTAATTTCCTACTTCAAGCGCATGAAGCTGGACCAAACGAAGAACCGAGTCTACCAGCATGATGTGAAGAACGGGCTTCGTGTGCATCTGCGTGGGCCTCTTCTGCAGAAAGCGTTATGTTTACCCAAAGGTACAAAGCTTTCATCCGATTGTT TGAACCGTATGGTCGATAAGGCACGGCAGCACGAGAACAAATTTTACGCACAATTCACATACGCCTGCAAGACAAATGCCGAGTATTCCGCCAAATGTTTAGACACGGGGTGACCCGTGTACTATCGCGCTCTGAAGAAACTTGCCAAAGAAACGGAGCGGTGTTGGAAATTTTGATTCGATGCTTACAAATAGGAACCATCGAAATGGAAACAATGATGATTAAATAATCAAACCATTCTTCGCAAAATGTTTGCCTGACAATCGATTTCNGCGAAAGAGTNNGGATTGGAAATAAATTTATCTTTTCTTTTCGTTTC                      ]




>consensus_7898#0
GAATCACAAAAAAACGCTCGAAGTAAGCAAAATGACTATCAAGCTCTGTTGGGTCTTTGC
TGCCCTTGGATTGATTTGGCTGCTGCAGATCTCCCCATGCGACGCCACGCCAAGGCACGC
GAAGCAATTAATTTCCTACTTCAAGCGCATGAAGCTGGACCAAACGAAGAACCGAGTCTA
CCAGCATGATGTGAAGAACGGGCTTCGTGTGCATCTGCGTGGGCCTCTTCTGCAGAAAGC
GTTATGTTTACCCAAAGGCACAAAGCTTTCATCCGATTGTTCTGAACCGTATGGTCGATA
AGGCACGGCAGCACGAGAACAAATTTTACGCACAATTCACATACGCCTGCAAGACAAATG
CCGAGTATTCCGCCAAATGTTTAGACACGGGGCGACCCGTGTACTATCGCGCTCTGAAGA
AACTTGCCAAAGAAACGGAGCGGTGTTGGAAATTTTGATTCGATGCTTACAAATAGGAAC
CATCGAAATGGAAACAATGATGATTAAATAATCAAACCATTCTTCGCAAAATGTTTGCCT
GACAATCGATTTCNGCGAAAGAGTGGGGATTGGAAATAAATTTATCTTTTCTTTTCGTTT
CCCTTAAAAAAAAAAAAAAAAAA

consensusID : consensus_7898#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 606
fasta sequence

                              [AAACAAAGCTCGAAGTAAGCAAAATGTCCATCAAGCTCTGTTGGGTCTTTGCTGCCCTTGGATTGATTTGTTTGTTGCAAATCTCACCAAGCGAGGCTACGCCTTCGCACTCACAGCAACTGCTTTCCTACTTCAAGCGCATGAAGCTGGACAAGACGAAGAACCGAGTCTACCTGGACGATGTGGAGTATGGTCTTCGAACGAATCTGCGTAGACCACTTCTCCAGAAAGCGCTATTTTTGCCCAAAGGCACAAAGTTTTCGTCCGATTGCTTAAACCGGATGGTCGATAAAGCACGACAGCTGGAAAATAAGTTTTACGCTCAATTCACATACGCCTGCAAGAAAAATGCCGAATATTCGTCCGATTGTTTAGACACGGGGCGACCTGTGTACTATCGCGATCTGAAAAAACTTGCCAAAGAAACGGAGCAGTGTTGGAAATTGTGATTCGATGCTTACAAATAGGAACCATCGAAATGGAAACAATGATGATTAAATAATCAAACCATTCTTCGCAAAATGTTTGCCCGACAATCGATATCGGCGAAAGAGTTGGGATAGGANATAAATNTATCTTTTCTNNCCGTATTCCTGAAAAAAAAAA]

[+] EMBL CF541876             [AAACAAAGCTCGAAGTAAGCAAAATGTCCATCAAGCTCTGTTGGGTCTTTGCTGCCCTTGGATTGATTTGTTTGTTGCAAATCTCACCAAGCGAGGCTACGCCTTCGCACTCACAGCAACTGCTTTCCTACTTCAAGCGCATGAAGCTGGACAAGACGAAGAACCGAGTCTACCTGGACGATGTGGAGTATGGTCTTCGAACGAATCTGCGTAGACCACTTCTCCAGAAAGCGCTATTTTTGCCCAAAGGCACAAAGTTTTCGTCCGATTGCTTAAACCGGATGGTCGATAAAGCACGACAGCTGGAAAATAAGTTTTACGCTCAATTCACATACGCCTGCAAGAAAAATGCCGAATATTCGTCCGATTGTTTAGACACGGGGCGACCTGTGTACTATCGCGATCTGAAAAAACTTGCCAAAGAAACGGAGCAGTGTTGGAAATTGTGATTCGATGCTTGCAAATAGGAACCATCGAAATGGAAACAATGATGATTAAATAATCAAACCATTCTTCGCAAAATGTTTGCCCGACAATCGATATCGGCGAAAGAGTTGGGATAGGANATAAATNTATCTTTTCTNNCCGTATTCCTGAAAAAAAAAA]
[+] EMBL CF541871             [AAACAAAGCTCGAAGTAAGCAAAATGTCCATCAAGCTCTGTTGGGTCTTTGCTGCCCTTGGATTGATTTGTTTGTTGCAAATCTCACCAAGCGAGGCTACGCCTTCGCACTCACAGCAACTGCTTTCCTACTTCAAGCGCATGAAGCTGGACAAGACGAAGAACCGAGTCTACCTGGACGATGTGGAGTATGGTCTTCGAACGAATCTGCGCAGACCACTTCTCCAGAAAGCGCTATTTTTGCCCAAAGGCACAAAGTCTTCGTCCGATTGCTTAAACCGGATGGTCGATAAAGCACGACAGCTGGAAAATAAGTTTTACGCTCAATCCACATACGCCTGCAAGAAAAATGCCGAATATTCGTCCGATTGTTTAGACACGGGGCGACCTGTGTACTATCGCGATCTGAAAAAACTTGCCAAAGAAACGGAGCAGTGTTGGAAATTGTGATTCGATGCTTACAAATAGGAACCATCGAAATGGAAACAATGATGATTAAATAATCAAACCACTCTTCGCAAAATGTNTGCCCGACAATCGATTTCGGCGAAAGAGTNGGGATTGGAAATAAATTTATCTTTTCTTTCCGTTTTCCTAAAAAAAAAA ]
[+] EMBL CNS08PRR             [                                                                                                                                                                                                                                                                                                                                                                                          CGGGGCGACCTGTGTACTATCGCGATCTGAAAAAACTTGCCAAAGATACGGAGCAGTGTTGGAAATTGTGATTCGATGCTTACAAATAGGAACCATCGAAATGGAAACAAT                                                                                                                     ]




>consensus_7898#1
AAACAAAGCTCGAAGTAAGCAAAATGTCCATCAAGCTCTGTTGGGTCTTTGCTGCCCTTG
GATTGATTTGTTTGTTGCAAATCTCACCAAGCGAGGCTACGCCTTCGCACTCACAGCAAC
TGCTTTCCTACTTCAAGCGCATGAAGCTGGACAAGACGAAGAACCGAGTCTACCTGGACG
ATGTGGAGTATGGTCTTCGAACGAATCTGCGTAGACCACTTCTCCAGAAAGCGCTATTTT
TGCCCAAAGGCACAAAGTTTTCGTCCGATTGCTTAAACCGGATGGTCGATAAAGCACGAC
AGCTGGAAAATAAGTTTTACGCTCAATTCACATACGCCTGCAAGAAAAATGCCGAATATT
CGTCCGATTGTTTAGACACGGGGCGACCTGTGTACTATCGCGATCTGAAAAAACTTGCCA
AAGAAACGGAGCAGTGTTGGAAATTGTGATTCGATGCTTACAAATAGGAACCATCGAAAT
GGAAACAATGATGATTAAATAATCAAACCATTCTTCGCAAAATGTTTGCCCGACAATCGA
TATCGGCGAAAGAGTTGGGATAGGANATAAATNTATCTTTTCTNNCCGTATTCCTGAAAA
AAAAAA

consensusID : consensus_7898#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 564
fasta sequence

                              [AAAACGCTCGAAGTAAGCAAAATGACTATCAAGCTCTGTTGGGTCTTTGCTGCCCTTGCATTGCTTTGGCTGCTGCAGATCTCCCCATGCGACGCCGGGCCAAGGCACGCGAAGCAATTAATTTCCTACTTCAAGCGCATGAAGCTGGACCAAACGAAGAACCGAGTCTACCAGCATGATGTGAAGAACGGGCTTCGTGTGCATCTGCGTGGACCTCTTCTGCAGAAAGCGTTATGTTTACCCAAAGGCACAAAGCTTTCGCCCGATTGTTTGAACCGTATGGTCGATAAGGCACGACAGCACGAGAACAAATTTTACGCACAGTTCACATACGCCTGCAAGACAAATGCCGAGTATTCCGCCAAATGTTTAGACTCTGGGCGACCCGTGTACTATCGCGCTCTGAAGAAACTTGCCAAAGAAACGGAGCGGTGTTGGAAATTATAATNA-TA-C-TATN-NNAACATAACATATCGATAAAGATACNNTGAGGCTNAANTANTAAAATCGTNCTTNACAAANTGTTTGTNNGACANTAANCNTTANTGGNTAGAGTNGAGATGTANA]

[+] EMBL CF541837             [AAAACGCTCGAAGTAAGCAAAATGACTATCAAGCTCTGTTGGGTCTTTGCTGCCCTTGCATTGCTTTGGCTGCTGCAGATCTCCCCATGCGACGCCGGGCCAAGGCACGCGAAGCAATTAATTTCCTACTTCAAGCGCATGAAGCTGGACCAAACGAAGAACCGAGTCTACCAGCATGATGTGAAGAACGGGCTTCGTGTGCATCTGCGTGGACCTCTTCTGCAGAAAGCGTTATGTTTACCCAAAGGCACAAAGCTTTCGCCCGATTGTTTGAACCGTATGGTCGATAAGGCACGACAGCACGAGAACAAATTTTACGCACAGTTCACATACGCCTGCAAGACAAATGCCGAGTATTCCGCCAAATGTTTAGACTCTGGGCGACCCGTGTACTATCGCGCTCTGAAGAAACTTGCCAAAGAAACGGAGCGGTGTTGGAAATTATAATNA TA C TATN NNAACATAACAT                                                                                               ]
[+] EMBL CF541617             [ AAACGCTCGAAGTAAGCAAAATGACTATCAGGCTCTGTTGGGTCTTTGCTGCCCTTGCATTGCTTTGGCTGCTGCAGATCTCCCCATGCGACGCCGGGCCAAGGCACGCGAAGCAATTAATTTCCTACTTCAAGCGCATGAAGCTGGACCAAACGAAGAACCGGGTCTACCAGCATGATGTGAAGAACGGGCTTCGTGTGCATCTGCGTGGACCTCTTCTGCAGAAAGCGTTATGTTTACCCAAAGGCACAAAGCTTTCGCCCGATTGTTTGAACCGTATGGTCGATAAGGCACGACAGCACGAGAACAAATTTTACGCACAGTTCACATACGCCTGCAAGACAAATGCCGAGTATTCCGCCAAATGTTTAGACTCTGGGCGACCCGTGTACTATCGCGCTCTGAAGANACTTGCCAAAGAAACGGAGCAGTGTTGGAAATNATAATTATTAGCTTATNTNNANCATGANGCATCGATAAAGATACNNTGAGGCTNAANTANTAAAATCGTNCTTNACAAANTGTTTGTNNGACANTAANCNTTANTGGNTAGAGTNGAGATGTANA]




>consensus_7898#2
AAAACGCTCGAAGTAAGCAAAATGACTATCAAGCTCTGTTGGGTCTTTGCTGCCCTTGCA
TTGCTTTGGCTGCTGCAGATCTCCCCATGCGACGCCGGGCCAAGGCACGCGAAGCAATTA
ATTTCCTACTTCAAGCGCATGAAGCTGGACCAAACGAAGAACCGAGTCTACCAGCATGAT
GTGAAGAACGGGCTTCGTGTGCATCTGCGTGGACCTCTTCTGCAGAAAGCGTTATGTTTA
CCCAAAGGCACAAAGCTTTCGCCCGATTGTTTGAACCGTATGGTCGATAAGGCACGACAG
CACGAGAACAAATTTTACGCACAGTTCACATACGCCTGCAAGACAAATGCCGAGTATTCC
GCCAAATGTTTAGACTCTGGGCGACCCGTGTACTATCGCGCTCTGAAGAAACTTGCCAAA
GAAACGGAGCGGTGTTGGAAATTATAATNATACTATNNNAACATAACATATCGATAAAGA
TACNNTGAGGCTNAANTANTAAAATCGTNCTTNACAAANTGTTTGTNNGACANTAANCNT
TANTGGNTAGAGTNGAGATGTANA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7898#0      GAATCACAAAAAAACGCTCGAAGTAAGCAAAATGACTATCAAGCTCTGTTGGGTCTTTGC 60
consensus_7898#2      ----------AAAACGCTCGAAGTAAGCAAAATGACTATCAAGCTCTGTTGGGTCTTTGC 50
consensus_7898#1      --------AAACAAAGCTCGAAGTAAGCAAAATGTCCATCAAGCTCTGTTGGGTCTTTGC 52
                                * ** ******************* * ***********************

consensus_7898#0      TGCCCTTGGATTGATTTGGCTGCTGCAGATCTCCCCATGCGACGCCACGCCAAGGCACGC 120
consensus_7898#2      TGCCCTTGCATTGCTTTGGCTGCTGCAGATCTCCCCATGCGACGCCGGGCCAAGGCACGC 110
consensus_7898#1      TGCCCTTGGATTGATTTGTTTGTTGCAAATCTCACCAAGCGAGGCTACGCCTTCGCACTC 112
                      ******** **** ****  ** **** ***** *** **** **   ***   **** *

consensus_7898#0      GAAGCAATTAATTTCCTACTTCAAGCGCATGAAGCTGGACCAAACGAAGAACCGAGTCTA 180
consensus_7898#2      GAAGCAATTAATTTCCTACTTCAAGCGCATGAAGCTGGACCAAACGAAGAACCGAGTCTA 170
consensus_7898#1      ACAGCAACTGCTTTCCTACTTCAAGCGCATGAAGCTGGACAAGACGAAGAACCGAGTCTA 172
                        ***** *  ***************************** * *****************

consensus_7898#0      CCAGCATGATGTGAAGAACGGGCTTCGTGTGCATCTGCGTGGGCCTCTTCTGCAGAAAGC 240
consensus_7898#2      CCAGCATGATGTGAAGAACGGGCTTCGTGTGCATCTGCGTGGACCTCTTCTGCAGAAAGC 230
consensus_7898#1      CCTGGACGATGTGGAGTATGGTCTTCGAACGAATCTGCGTAGACCACTTCTCCAGAAAGC 232
                      ** * * ****** ** * ** *****   * ******** * ** ***** ********

consensus_7898#0      GTTATGTTTACCCAAAGGCACAAAGCTTTCATCCGATTGTTCTGAACCGTATGGTCGATA 300
consensus_7898#2      GTTATGTTTACCCAAAGGCACAAAGCTTTCGCCCGATTGTT-TGAACCGTATGGTCGATA 289
consensus_7898#1      GCTATTTTTGCCCAAAGGCACAAAGTTTTCGTCCGATTGCT-TAAACCGGATGGTCGATA 291
                      * *** *** *************** ****  ******* * * ***** **********

consensus_7898#0      AGGCACGGCAGCACGAGAACAAATTTTACGCACAATTCACATACGCCTGCAAGACAAATG 360
consensus_7898#2      AGGCACGACAGCACGAGAACAAATTTTACGCACAGTTCACATACGCCTGCAAGACAAATG 349
consensus_7898#1      AAGCACGACAGCTGGAAAATAAGTTTTACGCTCAATTCACATACGCCTGCAAGAAAAATG 351
                      * ***** ****  ** ** ** ******** ** ******************* *****

consensus_7898#0      CCGAGTATTCCGCCAAATGTTTAGACACGGGGCGACCCGTGTACTATCGCGCTCTGAAGA 420
consensus_7898#2      CCGAGTATTCCGCCAAATGTTTAGACTCTGGGCGACCCGTGTACTATCGCGCTCTGAAGA 409
consensus_7898#1      CCGAATATTCGTCCGATTGTTTAGACACGGGGCGACCTGTGTACTATCGCGATCTGAAAA 411
                      **** *****  ** * ********* * ******** ************* ****** *

consensus_7898#0      AACTTGCCAAAGAAACGGAGCGGTGTTGGAAATTTTGATTCGATGCT-TACAAATAGGAA 479
consensus_7898#2      AACTTGCCAAAGAAACGGAGCGGTGTTGGAAATTATAATN--ATACTATNNNAACATAAC 467
consensus_7898#1      AACTTGCCAAAGAAACGGAGCAGTGTTGGAAATTGTGATTCGATGCT-TACAAATAGGAA 470
                      ********************* ************ * **   ** ** *   ** *  * 

consensus_7898#0      CCATCGAAATGGAAACAATGATGATTAAATAATCAAACCATTCTTCGCAAAATGTTTGCC 539
consensus_7898#2      ATATCGATAAAGATACNNTGAGGCTNAANTANTAAAATCGTNCTTNACAAANTGTTTGTN 527
consensus_7898#1      CCATCGAAATGGAAACAATGATGATTAAATAATCAAACCATTCTTCGCAAAATGTTTGCC 530
                        ***** *  ** **  *** * * ** ** * *** * * ***  **** ******  

consensus_7898#0      TGACAATCGATTTCNGCGAA-AGAGTGGGGATTGGAAATAAATTTATCTTTTCTTTTCGT 598
consensus_7898#2      NGACANTAANCNTTANTGGNTAGAGTNGAGATGTANA----------------------- 564
consensus_7898#1      CGACAATCGATATCGGCGAA-AGAGTTGGGATAGGANATAAATNTATCTTTTCTNNCCGT 589
                       **** *     *    *   ***** * ***                            

consensus_7898#0      TTCCCTTAAAAAAAAAAAAAAAAAA 623
consensus_7898#2      -------------------------
consensus_7898#1      ATTCCTGAAAAAAAAAA-------- 606