These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7903#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 760 fasta sequence [CCGCTGCGTTTTCCAATTTTGAGTCACTTTGTGTAGCGTTTGTTCGCCAATTGTAAAAGGAAAGGTACATAGTTGGTAATTGTAATCACGCGCCAGTCTACGCCAGTGCCGGAGTAATGCCGTCCGTCTATCTGGGTGTGCATTTGCCGTTCAAACCGTACCAAAAGCTAAAGGTGGATAATGTCGATCTAGCCAGCCCAACAGAGGCGCTTCGGTCGGAAGCAGCCAAACTGATGCAGAACGATGTTGCCGCAGATGATTTCGAATTGCTGTACTGTGGCTGCTTGCTGAAAACGGACGACATCCTGCAAAACAAAGGCGTCAGCGATGGTTCAATGATACACGTCATACAGAAGCGTCGCGAAAAAGATCCATCGACCGAGCAGCAGCAGCAGCCGCAACCGGAGGACCGAGAGCTGACCGAAGCCGAAGTGCAGGAAGTACTGTCCGTATGGCGCACGGTCGATTCGTCCAACTTCCAGAAGGCAAGGCAGCCCGAATTTATGAAGAACGTACTGGACGCCTACCCGGCGATTCGGCGCAATCTGTTCGTGCTGTCCTTGCTGAAGGATCCAATTCTGCTGTCCTCGATGCAGCAGCCGGAAATGGTTCGGCGCGTAGCCCCCAAGCATCCGATACTGGTCGAGGCATCACGCACGATTGTGCAGCTGCTCAACTCCAAGATGATCTCCAAGGTGGCCAACTGTCATCTGTCCGCACCGCTCGACAGCGCGCTGGACGATCCATTGACGGACTCGTC] [+] EMBL BM652348 [CCGCTGCGTTTTCCAATTTTGAGTCACTTTGTGTAGCGTTTGTTCGCCAATTGTAAAAGGAAAGGTACATAGTTGGTAATTGTAATCACGCGCCAGTCTACGCCAGTGCCGGAGTAATGCCGTCCGTCTATCTGGGTGTGCATTTGCCGTTCAAACCGTACCAAAAGCTAAAGGTGGATAATGTCGATCTAGCCAGCCCAACAGAGGCGCTTCGGTCGGAAGCAGCCAAACTGATGCAGAACGATGTTGCCGCAGATGATTTCGAATTGCTGTACTGTGGCAGCTTGCTGAAAACGGACGACATCCTGCAAAACAAAGGCGTTAGCGATGGTTCAATGATACACGTCATACAGAAGCGTCGCGAAAAAGATCCATCGACCGAGCAGCAGCAGCAGCCGCAACCGGAGGACCGAGAGCTGACCGAAGCCGAAGTGCAGGAAGTACTGTCCGTATGGCGCACGGTCGATTCGTCCAACTTCCAGAAGGCAAGACAGCCCGAATTTATGAAGAACGTACTGGACGCCTACCCGGCGATTCGGCGCAATCTGTTCGTACTGTCCTTGCTGAAGGATCCAATTCTGCTGTCCTCGATGCAGCAGCCGGAAATGGTTCGGCG ] [+] EMBL BM597651 [ ccgGTCACTTTGTGTAGCGTTTGTACGCCAATTGTAAAAGGAAAGGTACATAGTTGGTAATTGTAATCACGCGCCAGTCTACGCCAGTGCCGGAGTAATGCCGTCCGTCTATCTGGGTGTGCATTTGCCGTTAAAACCGTACCAAAAGCTAAAGGTGGATAATGTCGATCTAGCCAGCCCAACAGAGGCGCTTCGGTCGGAAGCAGCCAAACTGATGCAGAACGATGTTGCCGCAGATGATTTCGAATTGCTGTACTGTGGCTGCTTGCTGAAAACGGACGACATCCTGCAAAACAAAGGCGTCAGCGATGGTTCAATGATACACGTCATACAGAAGCGTCGCGAAAAAGATCCATCGACCGAGCAGCAGCAGCAGCCGCAACCGGAGGACCGAGAGCTGACCGAAGCCGAAGTGCAGGAAGTACTGTCCGTATGGCGCACGGTCGATTCGTCCAACTTCCAGAAGGCAAGGCAGCCCGAATTTATGAAGAACGTACTGGACGCCTACCCGGCGATTCGGCGCAATCTGTTCGTGCTGTCCTTGCTGAAGGATCCAATTCTGCTGTCCTCGATGCAGCAGCCGGAAATGGTTCGGCGCGTAGCCCCCAAGCATCCGATACTGGTCGAGGCATCACGCACGATTGTGCAGCTGCTCAACTCCAAGA ] [+] EMBL BX603106 [ GTACATAGTTGGTAATTGTAATCACGCGCCAGTCTACGCCAGTGCCGGAGTAATGCCGTCCGTCTATCTGGGTGTGCATTTGCCGTTAAAACCGTACCAAAAGCTAAAGGTGGATAATGTCGATCTAGCCAGCCCAACAGAGGCGCTTCGGTCGGAAGCAGCCAAACTGATGCAGAACGATGTTGCCGCAGATGATTTCGAATTGCTGTACTGTGGCTGCTTGCTGAAAACGGACGACATCCTGCAAAACAAAGGCGTCAGCGATGGTTCAATGATACACGTCATACAGAAGCGTCGCGAAAAAGATCCATCGACCGAGCAGCAGCAGCAGCCGCAACCGGAGGACCGAGAGCTGACCGAAGCCGAAGTGCAGGAAGTACTGTCCGTATGGCGCACGGTCGATTCGTCCAACTTCCAGAAGGCAAGGCAGCCCGAATTTATGAAGAACGTACTGGACGCCTACCCGGCGATTCGGCGCAATCTGTTCGTGCTGTCCTTGCTGAAGGATCCAATTCTGCTGTCCTCGATGCAGCAGCCGGAA ] [+] EMBL BM607316 [ ccgACGCCAGTGCCGGAGTAATGCCGTCCGTCTATCTGGGTGTGCATTTGCCGTTCAAACCGTACCAAAAGCTAAAGGTGGATAATGTCGATCTAGCCAGCCCAACAGAGGCGCTTCGGTCGGAAGCAGCCAAACTGATGCAGAACGATGTTGCTGCAGATGATTTCGAATTGCTGTACTGTGGCTGCTTGCTGAAAACGGACGACATCCTGAAAAACAAAGGCGTCAGCGATGGTTCAATGATACACGTCATACAGAAGCGTCGCGAAAAAGATCCATCGACTGAGCAGCAGCAGCAGCCGCAACCGGAGGACCGAGAGCTGACCGAAGCCGAAGTGCAGGAAGTACTGTCCGTATGGCGCACGGTCGATTCGTCCAACTTCCAGAAGGCAAGGCAGCCCGAATTTATGAAGAACGTACTGGACGCCTACCCGGCGATTCGGCGCAATCTGTTCGTACTGTCCTTGCTGAAGGATCCAATTCTGCTGTCCTCGATGCAGCAGCCGGAAATGGTTCGGCGCGTAGCCCCCAAGCATCCGATACTGGTCGAGGCATCGCGCACGATTGTGCAGCTGCTCAACTCCAAGATGATCTCCAAGGTGGCCAACTGTCATCTGTCCGCACCGCTCGACAGCGCGCTGGACGATCCATTGACGGACTCGTC] [+] EMBL BX611468 [ TACTGTGGCTGCTTGCTGAAAACGGACGACATCCTGCAAAACAAAGGCGTCAGCGATGGTTCAATGATACACGTCATACAGAAGCGTCGCGAAAAAGATCCATCGACCGAGCAGCAGCAGCAGCCGCAACCGGAGGACCGAGAGCTGACCGAAGCCGAAGTTCAGGAAGTACTGTCCGTATGGCGCACGGTCGATTCGTCCAACTTCCAGAAGGCAAGGCAGCCCGAATTTATGAAGAACGTACTGGACGCCTACCCGGCGATTCGGCGCAATCTGTTCGTGCTGTCCTTGCTGAAGGATCCAATTCTGCTGTCCTCGATGCAGCAGCCGGAAATGGTTCGGCGCGTAGCCCCCAAGCATCCGATACTGGTCGAGGCATCACGCACGATTGTGCAGCTGCTCAACTCCAAGATGATC ] [+] EMBL CNS09LB5 [ GAACCATCGACCGAGCAGCAGCAGCAGCCGCAACCGGAGGACCGAGAGCAGACCGAAGCCGAAGTGCAGGAAGTACAGTCCGAATGGCGCACGGACGAATCGTCCAACATCCAGAAGGCAAGG ] consensusID : consensus_7903#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence [CCGCCAGAAGGCAATCTGTTCGTACTGTCCTTGCTGAAGGATCCAATTCTGCTGTCCTCGATGCAGCAGCCGGAAATGGTTCGGCGCGTAGCCCCCAAGCATCCGATACTGGTCGAGGCATCGCGCACGATTGTGCAGCTGCTCAACTCCAAGATGATCTCCAAGGTGGCCAACTGTCATCTGTCCGCACCGCTCGACAGCGCGCTGGACGATCCATTGACGGACTCGTCGTCAAGCGACGAAAACACTGCCTCGCCGACGACCTCGACCGCTCCCAACACAATCCGCCGCATCACGGCCGACAATCTGGCGTCCGCGCTTGCTTTCGCGGGCTCGCGCAGCTCGTACAACTCGCTGTCCAACATCTCCCAGCGCGATGCGGACAGCCGTGCTAATCAGCCGGAACCGACTGGCGAAGGGTCAGCTGGAACCGGCACGTCTGTCGCCGCCAACCTGCCCTCCACCTCAGCTGCTGCCGGCAGCAATCAACCGACCACTTCCTCGAATGCTGCCGCCGGACGCATCACGTCCTCGATGTTGCTCGACGCG] [+] EMBL BM637133 [CCGCCAGAAGGCAATCTGTTCGTACTGTCCTTGCTGAAGGATCCAATTCTGCTGTCCTCGATGCAGCAGCCGGAAATGGTTCGGCGCGTAGCCCCCAAGCATCCGATACTGGTCGAGGCATCGCGCACGATTGTGCAGCTGCTCAACTCCAAGATGATCTCCAAGGTGGCCAACTGTCATCTGTCCGCACCGCTCGACAGCGCGCTGGACGATCCATTGACGGACTCGTCGTCAAGCGACGAAAACACTGCCTCGCCGACGACCTCGACCGCTCCCAACACAATCCGCCGCATCACGGCCGACAATCTGGCGTCCGCGCTTGCTTTCGCGGGCTCGCGCAGCTCGTACAACTCGCTGTCCAACATCTCCCAGCGCGATGCGGACAGCCGTGCTAATCAGCCGGAACCGACTGGCGAAGGGTCAGCTGGAACCGGCACGTCTGTCGCCGCCAACCTGCCCTCCACCTCAGCTGCTGCCGGCAGCAATCAACCGACCACTTCCTCGAATGCTGCCGCCGGACGCATCACGTCCTCGATGTTGCTCGACGCG] consensusID : consensus_7903#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [GGAGGAGCAGGGCACGAGTCCATCGGCACAACCACAGACGGAACGCGTTGGCACGAAACGGCACCACCGCAGCCGGCGGGGGAACCACCAGAACCGGAAGCCTGCCGCACAAACAACAACGAGAACGCGTCGAGCAACAACGAGGACGTGATGCGTCCGGCGGCAGCAATCGAGGAAGGGGACGGCAGAATGCCGCCGGCAGCAGCTGAGGGGGAGGGCAGGTTGGCGGCGACGGA] [+] EMBL CNS09LB6 [GGAGGAGCAGGGCACGAGTCCATCGGCACAACCACAGACGGAACGCGTTGGCACGAAACGGCACCACCGCAGCCGGCGGGGGAACCACCAGAACCGGAAGCCTGCCGCACAAACAACAACGAGAACGCGTCGAGCAACAACGAGGACGTGATGCGTCCGGCGGCAGCAATCGAGGAAGGGGACGGCAGAATGCCGCCGGCAGCAGCTGAGGGGGAGGGCAGGTTGGCGGCGACGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7903#0 CCGCTGCGTTTTCCAATTTTGAGTCACTTTGTGTAGCGTTTGTTCGCCAATTGTAAAAGG 60 consensus_7903#1 ------------------------------------------------------------ consensus_7903#2 ------------------------------------------------------------ consensus_7903#0 AAAGGTACATAGTTGGTAATTGTAATCACGCGCCAGTCTACGCCAGTGCCGGAGTAATGC 120 consensus_7903#1 ------------------------------------------------------------ consensus_7903#2 ------------------------------------------------------------ consensus_7903#0 CGTCCGTCTATCTGGGTGTGCATTTGCCGTTCAAACCGTACCAAAAGCTAAAGGTG-GAT 179 consensus_7903#1 -------CCGCCAGAAGGCAATCTGTTCGTACTGTCCTTGCTGAAGGATCCAATTCTGCT 53 consensus_7903#2 ------------------------------------------GGAGGAGCAGGGCACGAG 18 * * * consensus_7903#0 AATGTCGATCTAGCCAGCCCAACAGAGGCGCTTCGGTCGGAAGCAGCCAAACTGATGCAG 239 consensus_7903#1 GTCCTCGATGCAGC-AGC----CGGAAATGGTTCGGCGCGTAGCCCCCAAGC-------A 101 consensus_7903#2 TCCATCGGCACAACCACA--GACGGAA-CGCGTTGGCACGAAACGGCACCAC-------- 67 *** * * * * ** * * ** * * * * * consensus_7903#0 AACGATGTTGCCGCAGATGATTTCGAATTGCTGTACTGTGGCTGCTTGCTGAAAACGGAC 299 consensus_7903#1 TCCGATACTGGTCGAGGC-ATCGCGCACGATTGT---GCAGCTGCTCAACTCCAA--GAT 155 consensus_7903#2 --CGCAGCCGGCGGGGGAACCACCAGA--ACCGGAAGCCTGCCGCACAAACAACAACGAG 123 ** * * * * * ** ** * ** consensus_7903#0 GACATCCTGCAAAACAAAGGCGTCAGCGATGGTTCAATGATACACGTCATACAGAAGCGT 359 consensus_7903#1 GATCTCC--------AAGGTGGCCAACTG----TCATCTGTCCGCACCGCTCGACAGCGC 203 consensus_7903#2 AACGCGT---------CGAGCAACAACGA-----GGACGTGATGCGTCCGGCGGCAGCAA 169 * ** * * * * *** consensus_7903#0 CGCGAAAAAGATCCATCGACCGAGCAGCAGCAGCAGCCGCAACCGGAGGACCGAGA-GCT 418 consensus_7903#1 GCTGGAC--GATCCATTGACGGACTCGT--CGTCAA--GCGACGAAAACACTGCCTCGCC 257 consensus_7903#2 TCGAGGAAGGG---GACGGCAGAATGCCGCCGGCAGCAGC--TGAGGGGGAGGGCAGGTT 224 * * * ** * ** ** * * consensus_7903#0 GACCGAAGCCGAAGTGCAGGAAGTACTGTCCGTATGGCGCACGGTCGATTCGTCCAACTT 478 consensus_7903#1 GAC--GACCTCGACCGCTCCCAACACAATCCGC-CGCATCACGGCCGACA-ATCTGGCGT 313 consensus_7903#2 GGCGGCGACGGA------------------------------------------------ 236 * * * consensus_7903#0 CCAGAAGGCAAGGCAGCCCGAATTTATGAAGAACGTACTGGACGCCTACCCGGCGATTCG 538 consensus_7903#1 CC---GCGCTTGCTTTCGCGGGCTCGCGCAGCTCGTACAACTCGC-TGTCCAACATCTCC 369 consensus_7903#2 ------------------------------------------------------------ consensus_7903#0 GCGCAATCTGTTCGTGCTGTCCTTGCTGAAGGATCCAATTCTGCTGTCCTCGATGCAGCA 598 consensus_7903#1 CAGCG--CGATGCGGACAG-CCGTGCTAATCAGCCGGAACCGACTG---GCGAAGGGTCA 423 consensus_7903#2 ------------------------------------------------------------ consensus_7903#0 GCCGGAAATGGTTCGGCGCGTAGCCCCCAAGCATCCGATACTGGTCGAGGCATCACGCAC 658 consensus_7903#1 GCTGGAACCGGCACGTC-TGTCGCCGCCAACCTGCC--CTCCACCTCAGCTGCTGCCGGC 480 consensus_7903#2 ------------------------------------------------------------ consensus_7903#0 GATTGTGCAGCTGCTCAACTCCAAGATGATCTCCAAGGTGGCCAACTGTCATCTGTCCGC 718 consensus_7903#1 AGCAAT-CAACCGACCACTTCCTCGAATGCTGCC--GCCGGACGCATCACGTCC-TCGAT 536 consensus_7903#2 ------------------------------------------------------------ consensus_7903#0 ACCGCTCGACAGCGCGCTGGACGATCCATTGACGGACTCGTC 760 consensus_7903#1 GTTGCTCGAC-GCG---------------------------- 549 consensus_7903#2 ------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||