These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7905#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1485 fasta sequence [ACGCGAACGTGAAGGATCTGTCGCTGATCGAGGCGAAGCTGAGCTACATCCGGGCGTGGCAGAGCCTGCCCGAGTTCGGCGTCACGCTGTTCGTGATCAAGTTCGACGGGCACAAGAAGGAGGAGCTGCTCGGTGTCGCTAGCAACCGGATCATGAAGATGGACATTGCCACCGGCGACCATTTGAAGACGTGGCGATACAACACAATGAAGGCCTGGAACGTCAACTGGGAGATTCGGTGCATGATGGTACAGTTCCAGAACGAAACGGTCGTATTCTCCTGCCTGTCGGCGGACTGCAAAGTGATACACGAGTTCATCGGTGGCTACATCTTCATGTCAATGCGCTCGAAGGAAACGAACCAGACGCTCAACGAGGAGCTATTCCACAAGCTAACGGGTGGCTGGAATTAGGGAGGTGAAAGGGGAGACGTCAATAACATGCCGTTCCCAAAACAAACACACACACACAACCACAGTATGGCATGGCGATGCCTTGGCATAATTTTACTTGTTTTACGTGTAAACTTTAATCTTCGTTTTGACTCTTTTGTTGTACTGTACATAACATTAGTTGATTAGAGAGTATAGCGTTTACTGTATAATCGTGTCCCTCTCCCTATCCATAGGGAGGGGAAGATCCCAATTAACCCTTTCCGTTTGTATTCTTTTGAGCCGTTGCTTCGGGATGATGTTGTGGCAGTTGGACCAAAGATCGGCAGGGTCCCATTGCTGTATCACAGTTTTCTTTGGCAAAACACAAAGCTTATGTTGTCTAACAAATTTCTGCAGCAACAAGCAGAAGCAAAACCAATTGGATTTAGGGTATGTGCGACACGCTAGCTCGGGCTTGGTGTCTTAGCTCCAGCGTGCGATTGGAACTA-TTTGTGTACGAGTTTTAGCTAGCAATTGTTAAAAGAAATATTGGA-AGCAAGCCCGAAGGAAAGCAAAAAGCGAAAATACAAT-CAAATTGCCTTACTTATTGATAATTAGAAGCGAAAGTAAAAGTATTGAGGCGGCACGGTGATTGCGTCGGATTTGCCGCAACCATCCGTATCAAGCGGGATTGAACGCGTAACGACAATCGTGTCCGCGATAGCCTTCCAAGCGGGTTGTAGTGGATCCTGTACTGTCTTCCTGTACCTTTTTGCAGGATAATCAAGTGACAAAAACT--AGAGAGAGAAAAAAAAAACGGTGCCTCTTTGCAAAAGGATAATGGCTGACGTAGGCTGTAGCATGCATCTATGCCAACGATGGCAGTGAATGTGAATGTGTTTGTTCGTACGTTGTTTAGTATGTTTGTAATTGAGTTGGTCCCGTTTTCCTGCCTAATTTTAACACGCTACTGGTTAACAAAAACTTAACTTGAAACAGCAACAACTTAGTAGACGAACCGGCGAGCGACGCAACTGTCGAATGTAGACGCACCAAGCCCTTATCCGAAGCTACTTAACATGCTCGCACGGGGTGGCACTTAGCGAACAAC] [+] EMBL BX625215 [ACGCGAACGTGAAGGATCTGTCGCTGATCGAGGCGAAGCTGAGCTACATCCGGGCGTGGCAGAGCCTGCCCGAGTTCGGCGTCACGCTGTTCGTGATCAAGTTCGACGGGCACAAGAAGGAGGAGCTGCTCGGTGTCGCTAGCAACCGGATCATGAAGATGGACATTGCCACCGGCGACCATTTGAAGACGTGGCGATACAACACAATGAAGGCCTGGAACGTCAACTGGGAGATTCGGTGCATGATGGTACAGTTCCAGAACGAAACGGTCGTATTCTCCTGCCTGTCGGCGGACTGCAAAGTGATACACGAGTTCATCGGTGGCTACATCTTCATGTCAATGCGCTCGAAGGAAACGAACCAGACGCTCAACGAGGAGCTATTCCACAAGCTAACGGGTGGCTGGAATTAGGGAGGTGAAAGGGGAGACGTCAATAACATGCCGTTCCCAAAACAAACACACACACACAACCACAGTATGGCATGGCGATGCCTTGGCATAATTTTACTTGTTTTACGTGTAAACTTTAATCTTCGTTTTGACTCTTTTGTTGTACTGTACATAACATTAGTTGATTAGAGAGTATAGCGTTTACTGTATAATCGTGTCCCTCTCCCTATCCATAGGGAGAGGAAGATCCCAATTAACCCTTTCCGTTTGTATTCTTTTGAGCCGTTGCT ] [+] EMBL BX623327 [ GCTCGAAGGAAACGAACCAGACGCTCAACGAGGAGCTATTCCACAAGCTAACGGGTGGCTGGAATTAGGGAGGTGAAAGGGGAGACGTCAATAACATGCCGTTCCCAAAACAAACACACACACACAACCACAGTATGGCATGGCGATGCCTTGGCATAATTTTACTTGTTTTACGTGTAAACTTTAATCTTCGTTTTGACTCTTTTGTTGTACTGTACATAACATTAGTTGATTAGAGAGTATAGCGTTTACTGTATAATCGTGTCCCTCTCCCTATCCATAGGGAGGGGAAGATCCCAATTAACCCTTTCCGTTTGTATTCTTTTGAGCCGTTGCTTCGGGATGATGTTGTGGCAGTTGGACCAAAGATCGGCAGGGTCCCATTGCTGTATCACAGTTTTCTTTGGCAAAACACAAAGCTTATGTTGTCTAACAAATTTCTGCAGCAACAAGCAGAAGCAAAACCAATTGGATTTAGGGTATGTGCGACACGCTAGCTCGGGCTTGGTGTCTTAGCTCCAGCGTGCGATTGGAACTA TTTGTGTACGAGTTTTAGCTAGCAATTGTTAAAAGAAATATTGGA AGCAAGCCCGAAGGAAAG ] [+] EMBL BX603755 [ CTCAACGAGGAGCTATTCCACAAGCTAACGGGTGGCTGGAATTAGGGAGGTGAAAGGGGAGACGTCAATAACATGCCGTTCCCAAAACAA ACACACACACAACCACAGTATGGCATGGCGATGCCTTGGCATAATTTTACTTGTTTTACGTGTAAACTTTAATCTTCGTTTTGACTCTTTTGTTGTACTGTACATAACATTAGTTGATTAGAGAGTATAGCGTTTACTGTATAATCGTGTCCCTCTCCCTATCCATAGGGAGGGGAAGATCCCAATTAACCCTTTCCGTTTGTATTCTTTTGAGCCGTTGCTTCGGGATGATGTTGTGGCAGTTGGACCAAAGATCGGCCGGGTCCCATTGCTGTATCACAGTTTTCTTTGGCAAAACATAAAGCTTTTGTTGTCTAACAAATTTCTGCAGCAACAAGCAGAAGCAAAACCAATTCGATTTAGGGTATGTGCGACACGCGAGCTCGGGCTTGGTGTCTTAGCTCCAGCGTGCGATTGGAACTA TTTGTGTACGAGTTTTAGCTAGCAATTGTTAAAAGAAATATTGGA AGC ] [+] EMBL BM582032 [ ccgCAAACACACACACACAACCACAGTATGGCATGGCGATGCCTTGGCATAATTTTACTTGTTTTACGTGTAAACTTTAATCTTCGTTTTGACTCTTTTGTTGTACTGTACATAACATTAGTTGATTAGAGAGTATAGCGTTTACTGTATAATCGTGTCCCTCTCCCTATCCATAGGGAGGGGAAGATCCCAATTAACCCTTTCCGTTTGTATTCTTTTGAGCCGTTGCTTCGGGATGATGTTGTGGCAGTTGGACCAAAGATCGGCAGGGTCCCATTGCTGTATCACAGTTTTCTTTGGCAAAACACAAAGCTTATGTTGTCTAACAAATTTCTGCAGCAACAAGCAGAAGCAAAACCAATTGGATTTAGGGTATGTGCGACACGCTAGCTCGGGCTTGGTGTCTTAGCTCCAGCGTGCGATTGGAACTA TTTGTGTACGAGTTTTAGCTAGCAATTGTTAAAAGAAATATTGGA AGCAAGCCCGAAGGAAAGCAAAAAGCGAAAATACAATCCAAATTGCCTTACTTATTGATAATTAGAAGCG ] [+] EMBL BM634972 [ ccgAGAGAGTATAGCGTTTACTGTATAATCGTGTCCCTCTCCCTATCCATAGGGAGGGGAAGATCCCAATTAACCCTTTCCGTTTGTATTCTTTTGAGCCGTTGCTTCGGGATGATGTTGTGGCAGTTGGACCAAAGATCGGCAGGGTCCCATTGCTGTATCACAGTTTTCTTTGGCAAAACACAAAGCTTATGTTGTCTAACAAATTTCTGCAGCAACAAGCAGAAGCAAAACCAATTGGATTTAGGGTATGTGCGACACGCTAGCTCGGGCTTGGTGTCTTAGCTCCCCCGTGCGATTGGAACTA TTTGTGTACGAGTTTTAGCTAGCAATTGTTAAAAGAAATATTGGA AGCAAGCCCGAAGGAAAGCAAAAAGCGAAAATACAAT CAAATTGCCTTACTTATTGATAATTAGAAGCGAAAGTAAAAGTATTGAGGCGGCACGGTGATTGCGTCGGATTTGCCGCAACCATCCGTATCAAGCGGGATTGAACGCGTAACGACAATCGTGTCCGCGATAGCCTTCCAAGCGGGTTGTAGTGGATCCTGTACTGTCTTCCTGTACCTTTTTGCAGGATAATCAAGTGACAAAAACT AGAGAGAGAAAAAAAAAACGGTGCCTCTTTGCAAAAGGATAATGGCTGACGTAGGCTGTAG ] [+] EMBL BM602503 [ ccggtacCTTTTGAGCCGTTGCTTCGGGATTATGTTGTGGCAGTTGGACCAAAGATCGGCCGGGTCCCATTGCTGTATCACAGTTTTCTTTGGCAAAACACAAAGCTTTTGTTGTCTAACAAATTTCTGCAGCAACAAGCAGAAGCAAAACCAATTCGATTTAGGGTATGTGCGACACGCGAGCTCGGGCTTGGTGTCTTAGCTCCAGCGTGCGATTGGAACTATTTTGTGTACGATTTTTAGCTAGCAATTGTTAAAAGAAATATTGGA AGCAAGCCCGAAGGAAAGCAAAAAGCGAAAATACAAT CAAATTGCCTTACTTATTGATAATTAGAATCGAATGTAAAAGTATTGAGGCGGCACGGTGATTGCGTCGGATTTGCCGCAACCATCCGTATCAAGCGGGATTGAACGCGTAACGACAATCGTGTCCGCGATAGCCTTCCAAGCGGGTTGTAGTGGATCCTGTACTGTCTTCCTGTACCTTTTTGCAGGATAATCAAGTGACAAAAACTAGAGAGAGAGAAAAAAAAAACGGTGCCTCTTTGCAAAAGGATAATGGCTGACGTAGGCTGTAGCA ] [+] EMBL BX616301 [ TTTTAGCTAGCAATTGTTAAAAGAAATATTGGATAGCAAGCCCGAAGGAAAGCAAAAAGCGAAAATACAAT CAAATTGCCTTACTTATTGATAATTAGAAGCGAAAGTAAAAGTATTGAGGCGGCACGGTGATTGCGTCGGATTTGCCGCAACCATCCGTATCAAGCGGGATTGAACGCGTAACGACAATCGTGTCCGCGATAGCCTTCCAAGCGGGTTGTAGTGGATCCTGTACTGTCTTCCTGTACCTTTTTGCAGGATAATCAAGTGACAAAAACT AGAGAGAGAAAAAAAAAACGGTGCCTCTTTGCAAAAGGATAATGGCTGACGTAGGCTGTAGCATGCATCTATGCCAACGATGGCAGTGAATGTGAATGTGTTTGTTCGTACGTTGTTTAGTATGTTTGTAATTGAGTTGGTCCCGTTTTCCTGCCTAATTTTAACACGCTACTGGTTAACAAAAACTTAACTTGAAACAGCAACAACTTAGTAGACGAACCGGCGAGCGACGCAACTGTCGAATGTAGACGCACCAAGCCCTTATCCGAAGCTACTTAACATGCTCGCACGGGGTGGCACTTAGCGAACAAC] consensusID : consensus_7905#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 710 fasta sequence [CAGAACCCCGAGTTAAACCAGACGCTCACGAGGCGCTATTCCACAAGCTTACGGGTGGCTGGAATTAGGGAGGTGAAAGGGGAGACGTCCAATAACATGCCGTTCCCAAAACAAACACACACACACAACCACAGTATGGCATGGCGATGCCTTGGCATAATTTTACTTGTTTTACGTGTAAACTTTAATACTTACGTTCTAGACTCTTATAGTTGTACTGTACATAACATTANTTGATTAGAGCAGTATAGACGTAATACTGTATAATCGTGTCCCTACTCCCTATCCATAGGGAGGGGAAGATCCCAATTAACACCTTTCCGTTAGTATTCTATTAGAGCCGTATNGCTTACAGGGNTGATAGTTGTGGCAGTATGGACCAAAGATCGGCAGAGGTACCCATTGCTGTATCACAGAANACCTNTGGCAAAACACAAAGCATTATGTAGTCTAACANAATTTCTGCAGCAACAAGCAGAAGCAAAACCANATTGGATATANGGTATGTGCGACACGCTAGCTCGGGCTTTGGTGTCTTANCATCCAGACGTGCGATATGGAAACTAATATCTGGTGTACAGACAGTAATAAGACTAAGGCCACAAGGTTCACAAAAGCAACATAATNGGGGAANGCAAAGAACCGCACAGAGCAAACAGCCAAACAGCCGACAAAATACAATCCAAANTAGGCCCTTACCTTNATCTGCN] [+] EMBL AL692720 [CAGAACCCCGAGTTAAACCAGACGCTCACGAGGCGCTATTCCACAAGCTTACGGGTGGCTGGAATTAGGGAGGTGAAAGGGGAGACGTCCAATAACATGCCGTTCCCAAAACAAACACACACACACAACCACAGTATGGCATGGCGATGCCTTGGCATAATTTTACTTGTTTTACGTGTAAACTTTAATACTTACGTTCTAGACTCTTATAGTTGTACTGTACATAACATTANTTGATTAGAGCAGTATAGACGTAATACTGTATAATCGTGTCCCTACTCCCTATCCATAGGGAGGGGAAGATCCCAATTAACACCTTTCCGTTAGTATTCTATTAGAGCCGTATNGCTTACAGGGNTGATAGTTGTGGCAGTATGGACCAAAGATCGGCAGAGGTACCCATTGCTGTATCACAGAANACCTNTGGCAAAACACAAAGCATTATGTAGTCTAACANAATTTCTGCAGCAACAAGCAGAAGCAAAACCANATTGGATATANGGTATGTGCGACACGCTAGCTCGGGCTTTGGTGTCTTANCATCCAGACGTGCGATATGGAAACTAATATCTGGTGTACAGACAGTAATAAGACTAAGGCCACAAGGTTCACAAAAGCAACATAATNGGGGAANGCAAAGAACCGCACAGAGCAAACAGCCAAACAGCCGACAAAATACAATCCAAANTAGGCCCTTACCTTNATCTGCN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7905#0 ACGCGAACGTGAAGGATCTGTCGCTGATCGAGGCGAAGCTGAGCTACATCCGGGCGTGGC 60 consensus_7905#1 ------------------------------------------------------------ consensus_7905#0 AGAGCCTGCCCGAGTTCGGCGTCACGCTGTTCGTGATCAAGTTCGACGGGCACAAGAAGG 120 consensus_7905#1 ------------------------------------------------------------ consensus_7905#0 AGGAGCTGCTCGGTGTCGCTAGCAACCGGATCATGAAGATGGACATTGCCACCGGCGACC 180 consensus_7905#1 ------------------------------------------------------------ consensus_7905#0 ATTTGAAGACGTGGCGATACAACACAATGAAGGCCTGGAACGTCAACTGGGAGATTCGGT 240 consensus_7905#1 ------------------------------------------------------------ consensus_7905#0 GCATGATGGTACAGTTCCAGAACGAAACGGTCGTATTCTCCTGCCTGTCGGCGGACTGCA 300 consensus_7905#1 ------------------------------------------------------------ consensus_7905#0 AAGTGATACACGAGTTCATCGGTGGCTACATCTTCATGTCAATGCGCTCGAAGGAAACGA 360 consensus_7905#1 ---------------------------------------CAGAACCCC-----GAGTTAA 16 ** * * ** * consensus_7905#0 ACCAGACGCTCAACGAGGAGCTATTCCACAAGCTAACGGGTGGCTGGAATTAGGGAGGTG 420 consensus_7905#1 ACCAGACGCTCA-CGAGGCGCTATTCCACAAGCTTACGGGTGGCTGGAATTAGGGAGGTG 75 ************ ***** *************** ************************* consensus_7905#0 AAAGGGGAGACGTC-AATAACATGCCGTTCCCAAAACAAACACACACACACAACCACAGT 479 consensus_7905#1 AAAGGGGAGACGTCCAATAACATGCCGTTCCCAAAACAAACACACACACACAACCACAGT 135 ************** ********************************************* consensus_7905#0 ATGGCATGGCGATGCCTTGGCATAATTTTACTTGTTTTACGTGTAAACTTTAATCTT--C 537 consensus_7905#1 ATGGCATGGCGATGCCTTGGCATAATTTTACTTGTTTTACGTGTAAACTTTAATACTTAC 195 ****************************************************** * * consensus_7905#0 GTTTT-GACTCTTTT-GTTGTACTGTACATAACATTAGTTGATTAGAG-AGTATAG-CGT 593 consensus_7905#1 GTTCTAGACTCTTATAGTTGTACTGTACATAACATTANTTGATTAGAGCAGTATAGACGT 255 *** * ******* * ********************* ********** ******* *** consensus_7905#0 T-TACTGTATAATCGTGTCCCT-CTCCCTATCCATAGGGAGGGGAAGATCCCAATTAAC- 650 consensus_7905#1 AATACTGTATAATCGTGTCCCTACTCCCTATCCATAGGGAGGGGAAGATCCCAATTAACA 315 ******************** ************************************ consensus_7905#0 CCTTTCCGTTTGTATTCTTTT-GAGCCGT--TGCTTC--GGGATGAT-GTTGTGGCAGT- 703 consensus_7905#1 CCTTTCCGTTAGTATTCTATTAGAGCCGTATNGCTTACAGGGNTGATAGTTGTGGCAGTA 375 ********** ******* ** ******* **** *** **** *********** consensus_7905#0 TGGACCAAAGATCGGCAGGGT--CCCATTGCTGTATCACAGTTT-TCTTTGGCAAAACAC 760 consensus_7905#1 TGGACCAAAGATCGGCAGAGGTACCCATTGCTGTATCACAGAANACCTNTGGCAAAACAC 435 ****************** * ****************** ** *********** consensus_7905#0 AAAGC-TTATGTTGTCTAACAAA-TTTCTGCAGCAACAAGCAGAAGCAAAACCAA-TTGG 817 consensus_7905#1 AAAGCATTATGTAGTCTAACANAATTTCTGCAGCAACAAGCAGAAGCAAAACCANATTGG 495 ***** ****** ******** * ****************************** **** consensus_7905#0 ATTTAGGGTATGTGCGACACGCTAGCTCGGGCTT-GGTGTCTTAGC-TCCAG-CGTGCGA 874 consensus_7905#1 ATATANGGTATGTGCGACACGCTAGCTCGGGCTTTGGTGTCTTANCATCCAGACGTGCGA 555 ** ** **************************** ********* * ***** ******* consensus_7905#0 T-TGGAACTATTTGTGTACGAGTTTTAGCTAGCAATTGTTAAAAGAAATATTGGAAGCAA 933 consensus_7905#1 TATGGAA--ACTAATATCTGGTGTACAGACAGTAAT----AAGACTAAGGCCACAAGGTT 609 * ***** * * * * * * ** ** *** ** * ** *** consensus_7905#0 GCCCGAAGGAAAGCAAAAAGCGAAAATACAATCAAATTGCCTTACTTATTGATAATTAGA 993 consensus_7905#1 CACAAAAGCAACATAATNGGGGAANGCA-AAGAACCGCACAGAGCAAACAGCCAAACAGC 668 * *** ** ** * *** * ** * * * * * ** ** consensus_7905#0 AGCGAAAGTAAAAGTATTGAGGCGGCACGGTGATTGCGTCGGATTTGCCGCAACCATCCG 1053 consensus_7905#1 CGACAAAATACAA-TCCAAANTAGGCCC-----TTACCTTN-ATCTGCN----------- 710 * *** ** ** * * *** * ** * * ** *** consensus_7905#0 TATCAAGCGGGATTGAACGCGTAACGACAATCGTGTCCGCGATAGCCTTCCAAGCGGGTT 1113 consensus_7905#1 ------------------------------------------------------------ consensus_7905#0 GTAGTGGATCCTGTACTGTCTTCCTGTACCTTTTTGCAGGATAATCAAGTGACAAAAACT 1173 consensus_7905#1 ------------------------------------------------------------ consensus_7905#0 AGAGAGAGAAAAAAAAAACGGTGCCTCTTTGCAAAAGGATAATGGCTGACGTAGGCTGTA 1233 consensus_7905#1 ------------------------------------------------------------ consensus_7905#0 GCATGCATCTATGCCAACGATGGCAGTGAATGTGAATGTGTTTGTTCGTACGTTGTTTAG 1293 consensus_7905#1 ------------------------------------------------------------ consensus_7905#0 TATGTTTGTAATTGAGTTGGTCCCGTTTTCCTGCCTAATTTTAACACGCTACTGGTTAAC 1353 consensus_7905#1 ------------------------------------------------------------ consensus_7905#0 AAAAACTTAACTTGAAACAGCAACAACTTAGTAGACGAACCGGCGAGCGACGCAACTGTC 1413 consensus_7905#1 ------------------------------------------------------------ consensus_7905#0 GAATGTAGACGCACCAAGCCCTTATCCGAAGCTACTTAACATGCTCGCACGGGGTGGCAC 1473 consensus_7905#1 ------------------------------------------------------------ consensus_7905#0 TTAGCGAACAAC 1485 consensus_7905#1 ------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||