|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7911#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1285 fasta sequence
[TCGCATTCGCTTCAGTTCATCATAGATCGTCCATTCGCCGGGAAAATAACACGGCGTCGAACGTTGTTCTTGCGGAAAATTGCGGATTGCCGAAATTCATTCACATTTAGCTATTCTATCCTTCTGCGCGAAAAGTTCGGATCCCGAAATGAGTGGATATCGCGGAAATAAACGCCAACATTATGTCAAAGGCAGTGCTCGGCGCGGAAGAGATCACGAAAATGTGGCAGTGGATGAAAATAATCCGATCATACAGTGTTTCCGCGAATATGCTACAATACTAGACGCGAAG-ACGACAAATACGAACGCATCGTGAAAATCAGCCGGGATATAACGATCGAATCCAAGCGAATTATCTTTCTCCTGCATACCA-TCGATCCTAGGAAAAATAATTTGCAAAAAGTTTGCAACGAAGCGAAGGATCGACTGGAAGCTATTTTTCGCAATCATTTTGTTAACATAGCAAAAGAGCTTAAGGACCAGGACCCTTACCAGTATACACGAGCCTACACCAATGGAATGCAAGAATTTA-TTGAGGCTTACACATTTTATGAATATTCTTGCGGAATGAATATATCGCATTGGGACGCAATTCAGAAGAAGCTGACTTATTCATCGGACCAAAACGTCGATTCACCAAGCAATGCTAGAAGCATTGCAGAAAAACCCCTTAATGAGCCAACCGATGCCGAA-C-CTGA-CGAGCAAAAGAGGTCGAATGAAACCACTGGAGAAACAATGAAGCTGACTTGCTTACTTCATCCCCAAGACTTTGTACTTGGTCTGGGTGATCTTAGCGGCGAGATAATGCGAACGTGCATTAATTCTCTTGGATCTGGAAATTCGGAGAGCTGTTTTCTGCATTGTCGTTTTATGCAGGAGCTATACAAAGGATTCCTAAGCGTGACATCCACACGGAGCCGGGATTTTTCTCATAAGATGATGACTTTACGGCAAAGTTTGCTCAAAAGTGAGAACGTTTGCTACAATGTGACGGTACGAGGAGGTGAAGCGGCCAAATGGGGAACTACAGATGAAACATCGGGAGCCATGTTCCAGCTGCAGCCTTCAAAGGACAACGACGATGAGGGGGTATACTTTTGATCTGCTGCTCGTGTGTCCTGATTTCAGTATAAGGCGATGGTTAAACTTTATTGATTTATAAGAAAAATGTCTTTGTGGGATGGATCGATGGTTATTTAATGGATGATCACAATTCTGGAACCTACGCTACTGTATTCTTTCAGAATTGTAAAAAAATCTTTGCACCTTATTCTACCGCTTAAAT]
[+] EMBL CNS09GT9 [TCGCATTCGCTTCAGTTCATCATAGATCGTCCATTCGCCGGGAAAATAACACGGCGTCGAACGTTGTTCTTGCGGAAAATTGCGGATTGCCGAAATTCATTCACATTTAGCTATTCTATCCTTCTGCGCGAAAAGTTCGGATCCCGAAATGAGTGGATATCGCGGAAATAAACGCCAACATTATGTCAAAGGCAGTGCTCGGCGCGGAAGAGATCACGAAAATGTGGCAGTGGATGAAAATAATCCGATCATACAGTGTTTCCGCGAATATGCTACAATACTAGACGCGAAG ACGACAAATACGAACGCATCGTGAAAATCAGCCGGGATATAACGATCGAATCCAAGCGAATTATCTTTCTCCTGCATACCA TCGATCCTAGGAAAAATAATTTGCAAAAAGTTTGCAACGAAGCGAAGGATCGACTGGAAGCTATTTTTCGCAATCATTTTGTTAACATAGCAAAAGAGCTTAAGGACCAGGACCCTTACCAGTATACACGAGCCTACACCAATGGAATGCAAGAATTTA TTGAGGCTTACACATTTTATGAATATTCTTGCGGAATGAATATATCGCATTGGGACGCAATTCAGAAGAAGCTGACTTATTCATCGGACCAAAACGTCGATTCACCAAGCAATGCTAGAAGCATTGCAGAAAAACCCCTTAATGAGCCAACCGATGCCGAA C CTGA CGAGCAAAAGAGGTCGAATGAAACCACTGGAGAAACAATGAAGCTGACTTGCTTACTTCATCCCCAAGACTTTGTACTTGGTCTGGGTGATCTTAGCGGCGAGATAATGCGAACGTGCATTAATTCTCTTGGATCTGGAAATTCGGAGAGCTGTTTTCTGCATTGTCGTTTTATGCAGGAGCTATACAAAGGATTCCTAAGCGTGACATCCACACGGAACCGGGA ]
[+] EMBL CNS0998K [ GCTTCAGTTCATCATAGATCGTCCATTCGCCGGGAAAATAACACGGCGTCGAACGTTGTTCTTGCGGAAAATTGCGGATTGCCGAAATTCATTCACATTTAGCTATTCTATCCTTCTGCGCGAAAAGTTCGGATCCCGAAATGAGTGGATATCGCGGAAATAAACGCCAACATTATGTCAAAGGCAGTGCTCGGCGCGGAAGAGTTCACGAAAATGTGGCAGTGGATGAAAATAATCCGATCATACAGTGTTTCCGCGAATATGCTACAATACTAGACGCGAAC ACGACAAATACGAACGCATCGTGAAAATCAGCCGGGATATAACGATCGAATCCAAGCGAATTATCTTTCTCCTGCATACCATTTGATCCTAGGAAAAATAATTTGCAAAAAGTTTGCAACGAAGCGAAGGATCGACTGGAAGCTATTTTTCGCAATCATTTTGTTAACATAGCAAAAGAGCTTAAGGACCAGGACCCTTACCAGTATACACGAGCCTACACCAATGGAATGCAAGAATTTA TTGAGGCTTACACATTTTATGAATATTCTTGCGGAATGAATATATCGCATTGGGACGCAATTCAGAAGAAGCTGACTTATTCATCGGACCAAAACGTCGATTCACCAAGAAAa ]
[+] EMBL BM580472 [ cCGGCGTCGAACGTTGTTCTTGCGGAAAATTGCGGATTGCCGAAATTCATTCACATTTAGCTATTCTATCCTTCTGCGCGAAAAGTTCGGATCCCGAAATGAGTGGATATCGCGGAAATAAACGCCAACATTATGGCAAAGGCAGTGCTCGGCGCGGAAGAGATCACGAAAATGTGGCAGTGGATGAAAATAATCCGATCATACAGTGTTTCCGCGAATATGCTACAATACTAGACGCGAAGCACGACAAATACGAACGCATCGTGAAAATCAGCCGGGATATAACGATCGAATCCAAGCGAATTATCTTTCTCCTGCATACCA TCGATCCTAGGAAAAATAATTTGCAAAAAGTTTGCAACGAAGCGAAGGATCGACTGGAAGCTATTTTTCGCAATCATTTTGTTAACATAGCAAAAGAGCTTAAGGACCAGGACCCTTACCAGTATACACGAGCCTACACCAATGGAATGCAAGAATTTATTTGAGGCTTACACATTTTATGAATATTCTTGCGGAATGGATATATCGCATTGGGACGCAATT ]
[+] EMBL BM613823 [ ccgCGGCGTCGAACGTTGTTCTTGCGGAAAATTGCGGATTGCCGAAATTCATTCACATTTAGCTATTCTATCCTTCTGCGCGAAAAGTTCGGATCCCGAAATGAGTGGATATCGCGGAAATAAACGCCAACATTATGGCAAAGGCAGTGCTCGGCGCGGAAGAGATCACGAAAATGTGGCAGTGGATGAAAATAATCCGATCATACAGTGTTTCCGCGAATATGCTACAATACTAGACGCGAAGCACGACAAATACGAACGCATCGTGAAAATCAGCCGGGATATAACGATCGAATCCAAGCGAATTATCTTTCTCCTGCATACCA TCGATCCTAGGAAAAATAATTTGCAAAAAGTTTGCAACGAAGCGAAGGATCGACTGGAAGCTATTTTTCGCAATCATTTTGTTAACATAGCAAAAGAGCTTAAGGACCAGGACCCTTACCAGTATACACGAGCCTACACCAATGGAATGCAAGAATTTA TTGAGGCTTACACATTTTATGAATATTCTTGCGGAATGGATATATCGCATTGGGACGCAATTCAGAAGAAGCTGACTTATTCATCG ]
[-] EMBL CNS0998L [ AATAATTTGCAAAAAGTTTGCAACGAAGCGAAGGATCGACTGGAAGCTATTTTTCGCAATCATTTTGTTAACATAGCAAAAGAGCTTAAGGACCAGGACCCTTACCAGTATACACGAGCCTACACCAATGGAATGCAAGAATTTA TTGAGGCTTACACATTTTATGAATATTCTTGCGGAATGAATATATCGCATTGGGACGCAATTCAGAAGAAGCTGACTTATTCATCGGACCAAAACGTCGATTCACCAAGCAATGCTAGAAGCATTGCAGAAAAACCCCTTAATGAGCCAACCGATGCCGAA C CTGA CGAGCAAAAGAGGTCGAATGAAACCACTGGAGAAACAATGAAGCTGACTTGCTTACTTCATCCCCAAGACTTTGTACTTGGTCTGGGTGATCTTAGCGGCGAGATAATGCGAGCGTGCATTAATTCTCTTGGATCTGGAAATTCGGAGAGCTGTTTTCTGCATTGTCGTTTTATGCAGGAGCTATACAAAGGATTCCTAAGCGTGACATCCATACGAAGCCGGGATTTTTCTCATAAGATGATGACTTTACGGCAAAGTTTGCTCAAAAGTGAGAACGTTTGCTACAATGTGACGGTACGAGGAGGTGAAGCGGCCAAATGGGGAACTACAGATGAAACATCGGGAGCCATGTTCCAGCTGCAGCCTTCAAAGGACAACGACGATGAGGGGGTATACTTTTGATCTGCTGCTCGTGTGTCCTGATTTCAGTATAAGGCGATGGTTAAACTTTATTGATTTATAAGAAAAATGTCTTTGTGGGATGGATCGATGGTTATTTAATGGATGATCACAATTCTGGAACCTACGCTACTGTATTCTTTCAGAATTGTAAAAAAATCTTTGCACCTTATTCTACCGCTTA ]
[+] EMBL BX612076 [ TTATGAATATTCTTGCGGAATGGATATATCGCATTGGGACGCAATTCAGAAGAAGCTGACTTATTCATCGGACCAAAACGTCGATTCACCAAGCAATGCTAGAAGCATTGCAGAAAAACCCCTTAATGAGCCAACCGATGCCGAA C CTGA CGAGCAAAAGAGGTCGAATGAAACCACTGGAGAAACAATGAAGCTGACTTGCTTACTTCATCCCCAAGACTTTGTACTTGGT ]
[-] EMBL CNS09GTA [ gcgCGAAGCGCTGAGCGAGCAAAAGAGGTCGAATGAAACCACTGGAGAAACAATGAAGCTAACTTGCTTACTTCATCCCCAAGACTTTGTACTTGGTCTGGGTGATCTTAGCGGCGAGATAATGCGAACGTGCATTAATTCTCTTGGATCTGGAAATTCGGAGAGCTGTTTTCTGCATTGTCGTTTTATGCAGGAGCTATACAAAGGATTCCTAAGCGTGACATCCACACGGAGCCGGGATTTTTCTCATAAGATGATGACTTTACGGCAAAGTTTGCTCAAAAGTGAGAACGTTTGCTACAATGTGACGGTACGAGGAGGTGAAGCGGCCAAATGGGGAACTACAGATGAAACATCGGGAGCCATGTTCCAGCTGCAGCCTTCAAAGGACGACGACGATGAGGGGGTATACTTTTGATCTGCTGCTCGTGTGTCCTGATTTCAGTATAAGGCGATGGTTAAACTTTATTGATTTATAAGAAAAATGTCTTTGTGGGATGGATCGATGGTTATTTAATGGATGATCACAATTCTGGTACCTACGCTACTGTATTCTTTCAGAATTGTAAAAAAATCTTTGCACCTTATTCTACCGCTTAAAT]
consensusID : consensus_7911#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 797 fasta sequence
[TGCGTGAATGACAGGAAATGAAAGAGATGAAAAGTTTACATATTCAGAATTTCTTGACAAATTAGAAACATCTTGCGTTTTTCGGCAAATTCTACTTTCCATGGTTGCATAATGTACTTATGAGATTATTCCAGCAAATAGTTTGTGTTTGGTTTCATCCAAGGGCATTTTCAAAATCCGTTTTCAAATAATATTTTAGGTTGTGTTTTACTAGATTTTTACACTGAAGCCGTTTGAAAATTTTTGATGTAAACTAAAATTTAAATTTTAATGAAATTTGCTTTCCGCTCAAATTGTGTATTTTTTCGCAGGCGGTTAGAGTGTGTAGTTATTCCGTTCCTTTGAGTATCACTGAAATCGTTATTGCACTAAGTTAAACTGTCTTATAAACAATTTCCTAAACTTAAACAAATGCTAATAACGAAACACATCAATTCCTCCATCCCTGATTCTGACAAAGGCAATGAGACAATTTGATTTGTTTTTTTTTATAAATGTCGATTCTTTTGTCGTTTGTGTGCTGAGTTTGACCTGCTTGACCTGATTTCTAGATAGTTTAATCCACGTTAAATGATCATATTAGGGTAGTTAAGGCAGAAAAATCATAAAATACCCTAAACTTTATTGATTTATAAGAAAAATGTCTTTGTGGGATGGATCGATGGTTATTTAATGGATGATCACAATTCTCGAACGCTACGCTACTGTATTCTTTCAGAATTGTAAAAAAATCTTTGCACCTTATTCTACCGCTTAAATAACAAATATATAGANGTATTTCTGGTAATTGCGAATGG]
[+] EMBL BX625217 [TGCGTGAATGACAGGAAATGAAAGAGATGAAAAGTTTACATATTCAGAATTTCTTGACAAATTAGAAACATCTTGCGTTTTTCGGCAAATTCTACTTTCCATGGTTGCATAATGTACTTATGAGATTATTCCAGCAAATAGTTTGTGTTTGGTTTCATCCAAGGGCATTTTCAAAATCCGTTTTCAAATAATATTTTAGGTTGTGTTTTACTAGATTTTTACACTGAAGCCGTTTGAAAATTTTTGATGTAAACTAAAATTTAAATTTTAATGAAATTTGCTTTCCGCTCAAATTGTGTATTTTTTCGCAGGCGGTTAGAGTGTGTAGTTATTCCGTTCCTTTGAGTATCACTGAAATCGTTATTGCACTAAGTTAAACTGTCTTATAAACAATTTCCTAAACTTAAACAAATGCTAATAACGAAACACATCAATTCCTCCATCCCTGATTCTGACAAAGGCAATGAGACAATTTGATTTGTTTTTTTTTATAAATGTCGATTCTTTTGTCGTTTGTGTGCTGAGTTTGACCTGCTTGACCTGATTTCTAGATAGTTTAATCCACGTTAAATGATCATATTAGGGTAGTTAAGGCAGAAAAATCATAAAATACCCTAAACTTTATTGATTTATAAGAAAAATGTCTTTGTGGGATGGATCGATGGTTATTTAATGGATGATCACAATTCTCGAACGCTACGCTACTGTATTCTTTCAGAATTGTAAAAAAATCTTTGCACCTTATTCTACCGCTTAAATAACAAATATATAGANGTATTTCTGGTAATTGCGAATGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7911#0 TCGCATTCGCTTCAGTTCATCATAGATCGTCCATTCGCCGGGAAAATAACACGGCGTCGA 60
consensus_7911#1 ------------------------------------------------------------
consensus_7911#0 ACGTTGTTCTTGCGGAAAATTGCGGATTGCCGAAATTCATTCACATTTAGCTATTCTATC 120
consensus_7911#1 ------------------------------------------------------------
consensus_7911#0 CTTCTGCGCGAAAAGTTCGGATCCCGAAATGAGTGGATATCGCGGAAATAAACGCCAACA 180
consensus_7911#1 ------------------------------------------------------------
consensus_7911#0 TTATGTCAAAGGCAGTGCTCGGCGCGGAAGAGATCACGAAAATGTGGCAGTGGATGAAAA 240
consensus_7911#1 ------------------------------------------------------------
consensus_7911#0 TAATCCGATCATACAGTGTTTCCGCGAATATGCTACAATACTAGACGCGAAGACGACAAA 300
consensus_7911#1 ------------------------------------------------------------
consensus_7911#0 TACGAACGCATCGTGAAAATCAGCCGGGATATAACGATCGAATCCAAGCGAATTATCTTT 360
consensus_7911#1 ------------------------------------------------------------
consensus_7911#0 CTCCTGCATACCATCGATCCTAGGAAAAATAATTTGCAAAAAGTTTGCAACGAAGCGAAG 420
consensus_7911#1 ------------------------------------------------------------
consensus_7911#0 GATCGACTGGAAGCTATTTTTCGCAATCATTTTGTTAACATAGCAAAAGAGCTTAAGGAC 480
consensus_7911#1 ------------------------------------------------------------
consensus_7911#0 CAGGACCCTTACCAGTATACACGAGCCTACACCAATGGAATGCAAGAATTTATTGAGGCT 540
consensus_7911#1 ---------------------TGCGTGAATGACAG-GAAATGAAAGAGATGA--AAAGTT 36
* * * ** * **** **** * * * * *
consensus_7911#0 TACACATTTTATGAATATTCTTGCGGAATGAATATATCGCATTGGGACGCAATTCAGAAG 600
consensus_7911#1 TACATATTC--AGAATTTCTTGACAAATTAGAAACATC---TTG---CGTTTTTCGGCAA 88
**** *** **** * * * * * * * *** *** ** *** * *
consensus_7911#0 AAGCTGACTTATTCATCGGACCAAAACGTCGATTCACCAAGCAATGCTAG-AAGCA--TT 657
consensus_7911#1 ATTCT-ACTT-TCCATGGTTGCATAATGT--ACTTATGAGATTATTCCAGCAAATAGTTT 144
* ** **** * *** * ** ** ** * * * * ** * ** ** * **
consensus_7911#0 GCAGAAAAACCCCTTAATGAGC--CAACCGATGCCGAACCTGACGAGCAAAAGAGGTCGA 715
consensus_7911#1 GTGTTTGGTTTCATCCAAGGGCATTTTCAAAATCCGTTTTCAAATAATATTTTAGGTTGT 204
* * * * * ** * * *** * * * **** *
consensus_7911#0 ATGAAACCACTGGAGAAACAATGAAGCTGACTTGCTTACTTCATCCCCAAGACTTTGTAC 775
consensus_7911#1 GTTTTACTAG-ATTTTTACACTGAAGCCG-TTTGAAAATTTT-TGATGTAAACTAAAATT 261
* ** * *** ****** * *** * ** * * ***
consensus_7911#0 TTGGTCTGGGTGATCTTAGCGGCGAGATAATGCGAACGTGCATTAATTCTCTTGGATCTG 835
consensus_7911#1 TAAATTTTAATGAAATTTGCTTTCCGCTCA---AATTGTGTATTTTTTCGCAGGCGGTTA 318
* * * *** ** ** * * * * *** *** *** * * *
consensus_7911#0 GAAATTCGGAGAGCTGTTTTCTGCATTGTCGTTTTA-TGCAGGAGCTATACAAAGGATTC 894
consensus_7911#1 GAG---TGTGTAGTTATTCCGTTCCTTTGAGTATCACTGAAATCGTTATTGCACTAAGT- 374
** * ** * ** * * ** ** * * ** * * *** * * *
consensus_7911#0 CTAAGCGTGACATCCACACGGAGCCGGGATTTTTCTCATAAGATGATGACTTTACGGCAA 954
consensus_7911#1 -TAAAC-TGTCTTATAAACAATTTCCTAAACTTAAACAAATGCTAATAACGAAACACATC 432
*** * ** * * * ** * * ** ** * * * ** ** **
consensus_7911#0 AGTTTGCTCAAAAGTGAGAACGTTTGCTACAATGTGACGGTACGAGGAGGTGAAGCGGCC 1014
consensus_7911#1 AATTCCTCCATCCCTGATTCTGACAAAGGCAATGAGACAATTTGATTTGTTTTTTTTTAT 492
* ** ** *** * ***** *** * ** * *
consensus_7911#0 AAATGGGGAACTACAGATGAAACATCGGGAGCCATGTTCCAGCTGCAGCCTTCAAAGGAC 1074
consensus_7911#1 AAATGTCGATTCTTTTGTCGT---TTGTGTGCTGAGTTTGACCTG----CTTGACCTGAT 545
***** ** * * * * ** *** * *** *** * **
consensus_7911#0 AACGACGATGAGGGGGTATACTTTTGATCTGC-TGCTCGTGT-GTCCTGATTTCAGTATA 1132
consensus_7911#1 TTCTA-GATAGTTTAATCCACGTTAAATGATCATATTAGGGTAGTTAAGGCAGAAAAATC 604
* * *** * ** ** ** * * * * ** ** * * **
consensus_7911#0 AGGCGATGGT-TAAACTTTATTGATTTATAAGAAAAATGTCTTTGTGGGATGGATCGATG 1191
consensus_7911#1 ATAAAATACCCTAAACTTTATTGATTTATAAGAAAAATGTCTTTGTGGGATGGATCGATG 664
* ** *************************************************
consensus_7911#0 GTTATTTAATGGATGATCACAATTCTGGAAC-CTACGCTACTGTATTCTTTCAGAATTGT 1250
consensus_7911#1 GTTATTTAATGGATGATCACAATTCTCGAACGCTACGCTACTGTATTCTTTCAGAATTGT 724
************************** **** ****************************
consensus_7911#0 AAAAAAATCTTTGCACCTTATTCTACCGCTTAAAT------------------------- 1285
consensus_7911#1 AAAAAAATCTTTGCACCTTATTCTACCGCTTAAATAACAAATATATAGANGTATTTCTGG 784
***********************************
consensus_7911#0 -------------
consensus_7911#1 TAATTGCGAATGG 797
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||