These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7918#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1281 fasta sequence [CCGTTGCGCTCCGGAGATGAAGTCGTTTGCGAAGATGCTGTTCCTGTCGTCAGTGTTGTGTGTTGCTTTGCATGTACAGGGAATCTTCAGCCAAAATCCACAAACATCACACATTGTACTGCTCGGATCGACTAAACCGGATGGAACACGTGAATTTCGCTGTGGAGGATCGTACATTGGCCAAAACATTGTGCTCGCCGGGGCACATTGTGTTACAGGGAAAAATCAACCGGCCCTGGACACCGTACGTTTTGGCAGTGGCACGGATAACGTTATGCACTTTCGCATCGTTAATCACACGCTGCACTATCGCTACAAACCACAGTTCGAATATCACAACATGGCTGTCTACTATCTGGATGCGAGACCCGATCTCGTCAATGCAGGACGCTTCAAACCGGCTTGCATTCTGAAACCCCACATGAAGCAGGGCATTGTACAGATGGTTGGAGATAGCTCCAATGGTCGCGGATTGGCACTTCAGTCCACTTCGTTGGACGTTGTAGCGTCCGAGAAGTGTCACGAATACTATAATCCCATACCAAAGCTGCGCTTTGGTGTGTTGCTCTGCTGTTTCTGTGCAATGAACTCGGACACAACCGAATGCTCGAATATGCACAGTTCTCCTCTACAGCTGGTGATCAACCGAAAT-GGGAAAAGTGTT-CCCTTCCTGATCGGCCACAAATCGATCGGTAAAGCTTGCGGTGTCAAAAGTCCCGCCGTATTCACGCGCTACGGCTCTTACTACGAGTGGTTGGAAACGATCACCGATCTACCGCTCGAGGCTACGGCTTGCTTTAGCCGCTACTGACAAAGAAGGATGAGTTTTAACTAACGCACCGTGTTGCCTTGTCTTGCGTGGTACACAATTAAGCTTTTAGACAAAAGTAGGGCCAGCCACGAAAACCTGTTCACAATTCGGGGTTTCTTTGACGGTGGACGGGATTCCCCCAACCTATTACATCGGGTTTAGTTGTCAACCATTATGAGCTGTTTTTTTCAGTGTCTTTCAAACACTTCACAAGCTTTTTTCACATAACTATTTAACTTACATGGAGTTTGCTACTACTAAACATGTATATTTATTCCAATAAAACAACTTTAAAATAAACACTTTAACTTAACTTGTAATTGTTTAATAATTATTTCAATTTATTTTATCTGCTTGCGAGTGATTTTCACGTTAGGAAATACATCTCACACAATAAAATATATTCTACCTAACTTTATCAGGTTTTGATGATATTAGAATATGTTTTATAACTATACAATGAAGATGAA] [+] EMBL BM579399 [CCGTTGCGCTCCGGAGATGAAGTCGTTTGCGAAGATACTGTTCCTGTCGTCAGTGTTGTGTGTTGCTTTGCATGTACAGGGAATCTTCAGCCAAAATCCACAAACATCACACATTGTACTGCTCGGATCGACTAGACCGGATGGAACACGTGAATTTCGCTGTGGAGGATCGTACATTGGCCAAAACATTGTGCTCGCCGGGGCACATTGTGTTACAGGGAAAAATCAACCGGCCCTGGACACCGTACGTTTTGGCAGTGGCACGGATAACGTTATGCACTTTCGCATCGTTAATCACACGCTGCACTATCGCTACAAACCACAGTTCGAATATCACAACATGGCTGTCTACTATCTGGATGCGAGACCCGATCTCGTCAATGCAGGACGCTTCAAACCGGCTTGCATTCTGAAACCCCACATGAAGCAGGGCATTGTACAGATGGTTGGAGATAGCTCCAATGGTCGCGGATTGGCACTTCAGTCCACTTCGTTGAACGTTGTAGCGTCCGAGAAGTGTCACGAATACTATAATCCCATACCAAAGCTGCGCTTTGGTGTGTTGCTCTGCTGTTTCTGTGCAATGAACTCGGACACAACCGAATGCTCGAATATGCACAGTTCTCCTCTACAGCTGGTGATCAACCGAAAT GGGAAAAGTGTTCCCCTTCCTGATCGGC ] [+] EMBL BM644033 [ ccgGCGCTCCGGAGATGAAGTCGTTTGCGAAGATGCTGTTCCTGTCGTCAGTGTTGTGTGTTGCTTTGCATGTACAGGGAATCTTCAGCCAAAATCCACAAACATCACACATTGTACTGCTCGGATCGACTAAACCGGATGGAACACGTGAATTTCGCTGTGGAGGATCGTACATTGGCCAAAACATTGTGCTCGCCGGGGCACATTGTGTTACAGGGAAAAATCAACCGGCCCTGGACACCGTACGTTTTGGCAGTGGCACGGATAACGTTATGCACTTTCGCATCGTTAATCACACGCTGCACTATCGCTACAAACCACAGTTCGAATATCACAACATGGCTGTCTACTATCTGGATGCGAGACCCGATCTCGTCAATGCAGGACGCTTCAAACCGGCTTGTATTCTGAAACCCCACATGAAGCAGGGCATTGTACAGATGGTTGGAGATAGCTCCAATGGTCGCGGATTGGCACTTCAGTCCACTTCGTTGGACGTTGTAGCCTCCGAGAAGTGTCACGAATACTATAATCCCATACCGAAGCTTCGCTTTGGTGTGTTGCTCTGCTGTTTCTGTGCAATGAACTCGGACACAACCGAATGCTCGAATATGCACAGTTCTC ] [+] EMBL BM597556 [ ccgCCGGAGATGAAGTCGTTTGCGAAGATGCTGTTCCTGTCGTCAGTGTTGTGTGTTGCTTTGCATGTACAGGGAATCTTCAGCCAAAATCCACAAACATCACACATTGTACTGCTCGGATCGACTAAACCGGATGGAACACGTGAATTTCGCTGTGGAGGATCGTACATTGGCCAAAACATTGTGCTCGCCGGGGCACATTGTGTTACAGGGAAAAATCAACCGGCCCTGGACACCGTACGTTTTGGCAGTGGCACGGATAACGTTATGCACTTTCGCATCGTTAATCACACGCTGCACTATCGCTACAAACCACAGTTCGAATATCACAACATGGCTGTCTACTATCTGGATGCGAGACCCGATCTCGTCAATGCAGGACGCTTCAAACCGGCTTGTATTCTGAAACCCCACATGAAGCAGGGCATTGTACAGATGGTTGGAGATAGCTCCAATGGTCGCGGATTGGCACTTCAGTCCACTTCGTTGGACGTTGTAGCCTCCGAGAAGTGTCACGAATACTATAATCCCATACCGAAGCTTCGCTTTGGTGTGTTGCTCTGCTGTTTCTGTGCAATGAACTCGGACACAACCGAATGCTCGAATATGCACAGTTCTCCTCTACAGCTGGTGATCAACCGAAATGGGGAAAAGTGTT CCCTTCCTGATCGGCCACAAATCGATCGGTAAAGCTTGCGG ] [+] EMBL BX615922 [ GCGAAGATGCTGTTCCTGTCGTCAGTGTTGTGTGTTGCTTTGCATGTACAGGGAATCTTCAGCCAAAATCCACAAACATCACACATTGTACTGCTCGGATCGACTAAACCGGATGGAACACGTGAATTTCGCTGTGGAGGATCGTACATTGGCCAAAACATTGTGCTCGCCGGGGCACATTGTGTTACAGGGAAAAATCAACCGGCCCTGGACACCGTACGTTTTGGCAGTGGCACGGATAACGTTATGCACTTTCGCATCGTTAATCACACGCTGCACTATCGCTACAAACCACAGTTCGAATATCACAACATGGCTGTCTACTATCTGGATGCGAGACCCGATCTCGTCAATGCAGGACGCTTCAAACCGGCTTGCATTCTGAAACCCCACATGAAGCAGGGCATTGTACAGATGGTTGGAGATAGCTCCAATGGTCGCGGATTGGCACTTCAGTCCACTTCGTTGGACGTTGTAGCGTCCGAGAAGTGTCACGAATACTATAATCCTATACCAAAGCTGCGCTTTGGTGTGTTGCTCTGCTGTTTCTGTGCAATGAACTCGGACACAACCGAATGCTCGAATATGCACAGTTCT ] [+] EMBL BX608419 [ TGTGTTGCTTTGCATGTACAGGGAATCTTCAGCCAAAATCCACAAACATCACACATTGTACTGCTCGGATCGACTAAACCGGATGGAACACGTGAATTTCGCTGTGGAGGATCGTACATTGGCCAAAACATTGTGCTCGCCGGGGCACATTGTGTTACAGGGAAAAATCAACCGGCCCTGGACACCGTACGTTTTGGCAGTGGCACGGATAACGTTATGCACTTTCGCATCGTTAATCACACGCTGCACTATCGCTACAAACCACAGTTCGAATATCACAACATGGCTGTCTACTATCTGGATGCGAGACCCGATCTCGTCAATGCAGGACGCTTCAAACCGGCTTGCATTCTGAAACCCCACATGAAGCAGGGCATTGTACAGATGGTTGGAGATAGCTCCAATGGTCGCGGATTGGCACTTCAGTCCACTTCGTTGGACGTTGTAGCGTCCGAGAAGTGTCACGAATACTATAATCCTATACCAAAGCTGCGCTTTGGTGTGTTGCTCTGCTGTTTCTGTGCAATGAACTCGGACACAACCGAATGCTCGAATATGCACAGTTCTCCTCTACAGCTGGTGATCAACCGAAAT GGGAAAAGTGTT CCCTTCCTGATCGGCCACAAATCGATCGGTAAAGCTTGCGGTGTCAAAAGTCCCGCCGTATTCACGCGCTACGGCTCTTACTACGAGTGGTTGGAAACGATCACCGATCTACC ] [+] EMBL BX604392 [ ACAAACCACAGTTCGAATATCACAACATGGCTGTCTACTATCAGGATGCGAGACCCGATCTCGTCAATGCAGGACGCTTCAAACCGGCTTGTATTCTGAAACCCCACATGAAGCAGGGCATTGTACAGATGGTTGGAGATAGCTCCAATGGTCGCGGATTGGCACTTCAGTCCACTTCGTTGGACGTTGTAGCCTCCGAGAAGTGTCACGAATACTATAATCCCATACCGAAGCTTCGCTTTGGTGTGTTGCTCTGCTGTTTCTGTG ] [+] EMBL BM637156 [ ccgGATCAACCGAAAT GGGAAAAGTGTT CCCTTCCTGATCGGCCACAAATCGATCGGTAAAGCTTGCGGTGTCAAAAGTCCCGCCGTATTCACGCGCTACGGCTCCTACTACGAGTGGCTGGAAACGATCACCGATCTACCGCTCGAGGCTACGGCTTGCTTTAGCCGCTACTGACAAAGAAGGATGAGTTTTAACTAACGCACCGTGTTGCCTTGTCTTGCGTGGTACACAATTAAGCTTTTAGACAAAAGTAGGGCCAGCCACGAAAACCTGTTCACAATTCGGGGTTTCTTTGACGGTGGACGGGATTCCCCCAACCTATTACATCGGGTTTAGTTGTCAACCATTATGAGCTGTTTTTTTCAGTGTCTTTCAAACACTTCACAAGCTTTTTTCACATAACTATTTAACTTACATGGAGTTTGCTACTACTAAACATGTATATTTATTCCAATAAAACAACTTTAAAATAAACACTTTAACTTAACTTGTAATTGTTTAATAATTATTTCAATTTATTTTATCTGCTTGCGAGTGATTTTCACGTTAGGAAATACATCTCACACAATAAAATATATTCTACCTAACTTTATCAGGTTTTGATGATATTAGAATATGTTTTATAACTATACAATGAAGATGAA] consensusID : consensus_7918#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence [CCGCCCACGCGTCCGATGAAGCAGGGCATTGTACAGATGGTTGGAGATAGCTCCAATGGTCGCGGATTGGCACTCCAGTCCACTTCGTTGGACGTTGTAGCGTCCGAGAAGTGTCACGAATACTATAATCCCATACCGAAGCTGCGCTTTGGTGTGTTGCTCTGCTGTTTCTGTGCAATGAACTCGGACACAACCGAATGCTCGAATATGCACAGTTCTCCTTTACAGCTGGTGATCAACCGAAATGGGAAAAGTGTTCCCTTCCTGATCGCCCACAAATCGATCGGTAAAGCTTGCGGAGTCAAAAGTCCCGCCGTATTCACGCGCTACGGCTCCTACTACGAGTGGCTGGAAACGATCACCGATCTACCGCTCGAGGCTACGGCTTGCTTTAGCCGTTACTGACAAAGAAGGATGAGTTTTAACAAACGCACCGTGTTGCCTTGTCTTGCGTGGTACACAATTATGCTTTTAGACAAAAGTAGGGCCAGCCACGAAAACCTGTTCACAATTCGGGGTTTCTTTGACGGTGGATGGGATTCCCCCAACCTATTACTTCGGGTTTAGTTGTCCAACCATTATGTGCTGTTTTTTTCAGTGGCTTTCAAACACTTCACAAGCTTTTTTCACATAACTATTTAACTTACATGGAGTTTGCTACTACTAAACATGTATATTTA] [+] EMBL BM590808 [CCGCCCACGCGTCCGATGAAGCAGGGCATTGTACAGATGGTTGGAGATAGCTCCAATGGTCGCGGATTGGCACTCCAGTCCACTTCGTTGGACGTTGTAGCGTCCGAGAAGTGTCACGAATACTATAATCCCATACCGAAGCTGCGCTTTGGTGTGTTGCTCTGCTGTTTCTGTGCAATGAACTCGGACACAACCGAATGCTCGAATATGCACAGTTCTCCTTTACAGCTGGTGATCAACCGAAATGGGAAAAGTGTTCCCTTCCTGATCGCCCACAAATCGATCGGTAAAGCTTGCGGAGTCAAAAGTCCCGCCGTATTCACGCGCTACGGCTCCTACTACGAGTGGCTGGAAACGATCACCGATCTACCGCTCGAGGCTACGGCTTGCTTTAGCCGTTACTGACAAAGAAGGATGAGTTTTAACAAACGCACCGTGTTGCCTTGTCTTGCGTGGTACACAATTATGCTTTTAGACAAAAGTAGGGCCAGCCACGAAAACCTGTTCACAATTCGGGGTTTCTTTGACGGTGGATGGGATTCCCCCAACCTATTACTTCGGGTTTAGTTGTCCAACCATTATGTGCTGTTTTTTTCAGTGGCTTTCAAACACTTCACAAGCTTTTTTCACATAACTATTTAACTTACATGGAGTTTGCTACTACTAAACATGTATATTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7918#0 CCGTTGCGCTCCGGAGATGAAGTCGTTTGCGAAGATGCTGTTCCTGTCGTCAGTGTTGTG 60 consensus_7918#1 ------------------------------------------------------------ consensus_7918#0 TGTTGCTTTGCATGTACAGGGAATCTTCAGCCAAAATCCACAAACATCACACATTGTACT 120 consensus_7918#1 ------------------------------------------------------------ consensus_7918#0 GCTCGGATCGACTAAACCGGATGGAACACGTGAATTTCGCTGTGGAGGATCGTACATTGG 180 consensus_7918#1 ------------------------------------------------------------ consensus_7918#0 CCAAAACATTGTGCTCGCCGGGGCACATTGTGTTACAGGGAAAAATCAACCGGCCCTGGA 240 consensus_7918#1 ------------------------------------------------------------ consensus_7918#0 CACCGTACGTTTTGGCAGTGGCACGGATAACGTTATGCACTTTCGCATCGTTAATCACAC 300 consensus_7918#1 ------------------------------------------------------------ consensus_7918#0 GCTGCACTATCGCTACAAACCACAGTTCGAATATCACAACATGGCTGTCTACTATCTGGA 360 consensus_7918#1 ------------------------------------------------------------ consensus_7918#0 TGCGAGACCCGATCTCGTCAATGCAGGACGCTTCAAACCGGCTTGCATTCTGAAACCCCA 420 consensus_7918#1 ----------------------------------------------CCGCCCACGCGTCC 14 * * * * consensus_7918#0 CATGAAGCAGGGCATTGTACAGATGGTTGGAGATAGCTCCAATGGTCGCGGATTGGCACT 480 consensus_7918#1 GATGAAGCAGGGCATTGTACAGATGGTTGGAGATAGCTCCAATGGTCGCGGATTGGCACT 74 *********************************************************** consensus_7918#0 TCAGTCCACTTCGTTGGACGTTGTAGCGTCCGAGAAGTGTCACGAATACTATAATCCCAT 540 consensus_7918#1 CCAGTCCACTTCGTTGGACGTTGTAGCGTCCGAGAAGTGTCACGAATACTATAATCCCAT 134 *********************************************************** consensus_7918#0 ACCAAAGCTGCGCTTTGGTGTGTTGCTCTGCTGTTTCTGTGCAATGAACTCGGACACAAC 600 consensus_7918#1 ACCGAAGCTGCGCTTTGGTGTGTTGCTCTGCTGTTTCTGTGCAATGAACTCGGACACAAC 194 *** ******************************************************** consensus_7918#0 CGAATGCTCGAATATGCACAGTTCTCCTCTACAGCTGGTGATCAACCGAAATGGGAAAAG 660 consensus_7918#1 CGAATGCTCGAATATGCACAGTTCTCCTTTACAGCTGGTGATCAACCGAAATGGGAAAAG 254 **************************** ******************************* consensus_7918#0 TGTTCCCTTCCTGATCGGCCACAAATCGATCGGTAAAGCTTGCGGTGTCAAAAGTCCCGC 720 consensus_7918#1 TGTTCCCTTCCTGATCGCCCACAAATCGATCGGTAAAGCTTGCGGAGTCAAAAGTCCCGC 314 ***************** *************************** ************** consensus_7918#0 CGTATTCACGCGCTACGGCTCTTACTACGAGTGGTTGGAAACGATCACCGATCTACCGCT 780 consensus_7918#1 CGTATTCACGCGCTACGGCTCCTACTACGAGTGGCTGGAAACGATCACCGATCTACCGCT 374 ********************* ************ ************************* consensus_7918#0 CGAGGCTACGGCTTGCTTTAGCCGCTACTGACAAAGAAGGATGAGTTTTAACTAACGCAC 840 consensus_7918#1 CGAGGCTACGGCTTGCTTTAGCCGTTACTGACAAAGAAGGATGAGTTTTAACAAACGCAC 434 ************************ *************************** ******* consensus_7918#0 CGTGTTGCCTTGTCTTGCGTGGTACACAATTAAGCTTTTAGACAAAAGTAGGGCCAGCCA 900 consensus_7918#1 CGTGTTGCCTTGTCTTGCGTGGTACACAATTATGCTTTTAGACAAAAGTAGGGCCAGCCA 494 ******************************** *************************** consensus_7918#0 CGAAAACCTGTTCACAATTCGGGGTTTCTTTGACGGTGGACGGGATTCCCCCAACCTATT 960 consensus_7918#1 CGAAAACCTGTTCACAATTCGGGGTTTCTTTGACGGTGGATGGGATTCCCCCAACCTATT 554 **************************************** ******************* consensus_7918#0 ACATCGGGTTTAGTTGTC-AACCATTATGAGCTGTTTTTTTCAGTGTCTTTCAAACACTT 1019 consensus_7918#1 ACTTCGGGTTTAGTTGTCCAACCATTATGTGCTGTTTTTTTCAGTGGCTTTCAAACACTT 614 ** *************** ********** **************** ************* consensus_7918#0 CACAAGCTTTTTTCACATAACTATTTAACTTACATGGAGTTTGCTACTACTAAACATGTA 1079 consensus_7918#1 CACAAGCTTTTTTCACATAACTATTTAACTTACATGGAGTTTGCTACTACTAAACATGTA 674 ************************************************************ consensus_7918#0 TATTTATTCCAATAAAACAACTTTAAAATAAACACTTTAACTTAACTTGTAATTGTTTAA 1139 consensus_7918#1 TATTTA------------------------------------------------------ 680 ****** consensus_7918#0 TAATTATTTCAATTTATTTTATCTGCTTGCGAGTGATTTTCACGTTAGGAAATACATCTC 1199 consensus_7918#1 ------------------------------------------------------------ consensus_7918#0 ACACAATAAAATATATTCTACCTAACTTTATCAGGTTTTGATGATATTAGAATATGTTTT 1259 consensus_7918#1 ------------------------------------------------------------ consensus_7918#0 ATAACTATACAATGAAGATGAA 1281 consensus_7918#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||