These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7920#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1633 fasta sequence [ATGTTTTTTTTTATTATTATTTGGTTCATTACGAAGACGATCTTGTTGTTGCTTCACACGATCACATTTGGCGCATTCGGCCGACATAGGTTTTCGCATTTGGGTATATTATTGATAAATGTATATGTAGTTTATGCATTATCATCCACATTGCCTTGCCTGTCTCGTATTGAAATCTTTCAAAGCCAAAGAAAACATCCGATTTCATCGCTATTATATTGGTTCCTATTGTATGCCAGCTTTTCTCAGCACATTCTTTTCGTCTAATAGTTTCGAGCTCCACTGTTTATCGTCTTTTTTTTTTTGTTTTGCTTTGCGGACTTTGCGCGATTCGTTAAACTGTTGTTCAATCCATTTTTCGTTTACGGAGTTTGAGAATATTATTATGCGAATAACTAGGTTTTGTTTCGTTTTCGATTACTACGAGTCAATAGAGGTTGGAATGGGCGTGCCTTTGCACCACTACACCGGGGATGATCTGCAGTCTAGTATTGATTATTTGGCTGAAATCAAATGCTCAATGGATGCTAAATTCAAATATAATCTGCTACTCCTACAGCCTATTCAAATGGAATGGCATTCATACTCCAACAGAGGGGTTACAATGTTACAACTGAGAGACACGCGCTAGATTTTTGTTTTTGTCATTCAAAACACGAGAAAGAACGGAGCCATACATTTCGATGTTGTTAGCGCCATTTGCAACGAAAATACACACAGATAATAACATCCTTTTAGGATAACTAAACATATAACACGTCATGCAAATAATAACGAGCAAGCCCTATCTTGGAATGCAATTTCAGTTTAGAATGCGATGAATACTTGTTTAAGGAAATCTGGTTTTCTTACTAAAATATCAACTTCGGTCACAGTTTTGGTTTTGCAATTTGACAAACAGTGACTTGAGTGATTTTCTCTCACCTCGTGATGCCACAAGCCCAATACTGTTCATTGCAATACAGTGCAAAAATTGTCATAAACTGCAGTTTGAGAGCAAGTCATTAACACGGCAATAAGGCAAAAAATGCAAATTAAGCCCTGGAGATCTGTAAAATAATGCGGACCTTTAGCAAAAGCATGAGCGCACGTAAAATTAATGTTCAACAATACAACAAAACATAC-AAAAAAACACACACACTCACACATACAAAACGTACACACAAGAGCAAACAAAAGATAATCACATGATGTAAAAACGGTCTCTTTACGATTCGAGTAACCGGGAGAGCGGTGGTCCGTAAGGCTTACCGTTTCGTTTTTCGTAAATGTTAATATATCGCAGCAGTGCAGTACTGTCCTACAAGAGTAATGAGTTTC--GTCAGTTTTAGTCTCAGTTCCTACTAGGCATCATTGGGAAGTTGAGAAATAGGAGAACGATTAGCACACCTTCCCGCACGAAACGCAGCTTACAAGCAAATATAGTTACCCCCAAACTGTACCACTCGTACCACTGAGACACAACCGCGGCATCGAGGGATTCGGTCGCCCTTTCCGTTTTGCTTCATCAAGTTGCCAGTTTGTGCGAGCACGCAATCGGGTGTACACGTTCCGGTTCGCAGCATCTAGCGATAGAACTTCACCTCCGCATCGACGCAGTCTTTCATGAGTTCGTCCAGCTCGTGGCTAGCTT] [+] EMBL CNS097HE [ATGTTTTTTTTTATTATTATTTGGTTCATTACGAAGACGATCTTGTTGTTGCTTCACACGATCACATTTGGCGCATTCGGCCGACATAGGTTTTCGCATTTGGGTATATTATTGATAAATGTATATGTAGTTTATGCATTATCATCCACATTGCCTTGCCTGTCTCGTATTGAAATCTTTCAAAGCCAAAGAAAACATCCGATTTCATCGCTATTATATTGGTTCCTATTGTATGCCAGCTTTTCTCAGCACATTCTTTTCGTCTAATAGTTTCGAGCTCCACTGTTTATCGTCTTTTTTTTTTTGTTTTGCTTTGCGGACTTTGCGCGATTCGTTAAACTGTTGTTCAATCCATTTTTCGTTTACGGAGTTTGAGAATATTATTATGCGAATAACTAGGTTTTGTTTCGTTTTCGATTACTACGAGTCAATAGAGGTTGGAATGGGCGTGCCTTTGCACCACTACACCGGGGATGATCTGCAGTCTAGTATTGATTATTTGGCTGAAATCAAATGCTCAATGGATGCTAAATTCAAATATAATCTGCTACTCCTACAGCCTATTCAAATGGAATGGCATTCATACTCCAACAGAGGGGTTACAATGTTACAACTGAGAGACACGCGCTAGATTTTTGTTTTTGTCATTCAAAACACGAGAAAGAACGGAGCCATACATTTCGATGTTGTTAGCGCCATTTGCAACGAAAATACACACAGATAATAACATCCTTTTAGGATAACTAAACATATAACACGTCATGCAAATAATAACGAGCAAGCCCTATCTTGGAATGCAATTTCAGTTTAGAATGCGATGAATACTTGTTTAAGGAAATCTGGAAAAATTACTAAAA ] [-] EMBL BX626799 [ TTTGCGCGATTCGTTAAACTGTTGTTCAAGCCATTTTTCGTTTAC GAGTTTGAGAATATTATTATGCGAATAACTAGGTTTTGTTTCGTTTTCGATTACTACGAGTCAATAGAGGTTGGAATGGGCGTGCCTTTGCACCACTACACCGGGGATGATCTGCAGTCTAGTATTGATTATTTGGCTGAAATCAAATGCTGAATGGATGCTAAATTCAAATATAATCTGCTACTACTACAGCCTATTCAAATGGAATGGCATTCATGCTCGAAAAGTGGAGTTACAATGTTACAACT GAGACACGCGCTAGATTTTCGTTTTTGCCACTCAAAACACGAGAAAGAACGGAGCCATACATTTCGATGTTGTTAGCGCCATTTGCAGCGAAAATACACACAGATAATAACATCCTTTTAGGATAACTAAACATATAACACGTCATGCAAATAATAACGAGCAAGCCCTATCTTGGAATGCAATTTCAGTTTAGAATGCGATGAATACTTGTTTAAGGAAATCTGGTTTTCTTACTAAAATATCAACTTCGGTCACAGTTTTGGTTTTGCAATTTGACAAACAGTGACTTGAGTGATTTTCTCTCACCTCGTGATGCCACAAGCCCAATACTGTTCATTGCAATACAGTGCAAAAATTGTCATAAACTGCAGTTTGAGAGCAAGTCATTAACACGGCAATAA ] [-] EMBL CNS097HD [ GATTACTTTTTTTCAATAGAGGTTGGAATGGGCGTGCCTTTGCACCACTACACCGGGGATGATCTGCAGTCTAGTATTGATTATTTGGCTGAAATCAAATGCTCAATGGATGCTAAATTCAAATATAATCTGCTACTCCTACAGCCTATTCAAATGGAATGGCATTCATACTCCAACAGAGGGGTTACAATGTTACAACTGAGAGACACGCGCTAGATTTTTGTTTTTGTCATTCAAAACACGAGAAAGAACGGAGCCATACATTTCGATGTTGTTAGCGCCATTTGCAACGAAAATACACACAGATAATAACATCCTTTTAGGATAACTAAACATATAACACGTCATGCAAATAATAACGAGCAAGCCCTATCTTGGAATGCAATTTCAGTTTAGAATGCGATGAATACTTGTTTAAGGAAATCTGGTTTTCTTACTAAAATATCAACTTCGGTCACAGTTTTGGTTTTGCAATTTGACAAACAGTGACTTGAGCGATTTTCTCTCACCTCACGATGTCACAACTTCAATACTGTTCATTGCAATACAGTGCAAAAATTGTCATAAACTGCAGTTTGAGAGCGTATCATTAACACGGCAATAAGGCAAAAAATGCAAATTAAGCCCTGGAGATCTGTAAAATAATGCGGACCTTTAGCAAAAGCATGAGCGCACGTAAAATTAATGTTCAACAATACAACAAAACATACAAAAAAAACACACACACTCACACATACAAAACGTACACACAAGAGCAAACAAAAGATAATCACATGATGTAAAAACGGTCTCCTTACGATTCGATTAACCGGGAGAGCGGTGGTCCGTAAGGCTTACC ] [-] EMBL BX608103 [ TGGCATTCATGCTCGAAAAGTGGAGTTACAATGTTACAACT GAGACACGCGCTAGATTTTCGTTTTTGCCACTCAAAACACGAGAAAGAACGGAGCCATACATTTCGATGTTGTTAGCGCCATTTGCAGCGAAAATACACACAGATAATAACATCCTTTTAGGATAACTAAACATATAACACGTCATGCAAATAATAACGAGCAAGCCCTATCTTGGAATGCAATTTCAGTTTAGAATGCGATGAATACTTGTTTAAGGAAATCTGGTTTTCTTACTAAAATATCAACTTCGGTCACAGTTTTGGTTTTGCAATTTGACAAACAGTGACTTGAGTGATTTTCTCTCACCTCGTGATGCCACAAGCCCAATACTGTTCATTGCAATACAGTGCAAAAATTGTCATAAACTGCAGTTTGAGAGCAAGTCATTAACACGGCAATAAGGCAAAAAATGCAAATTAAGCCCTGGAGATCTGTAAAATAATGCGGACCTTTAGCAAAAGCATGAGCGCACGTAAAATTAATGTTCAACAATACAACAAAACATAC AAAAAAACACACACACTCACACATACAAAACGTACACACAAGAGCAAACAAAAGATAATCACATGATGTAAAAACGGTCTCTTTACGATTCGAGTAACCGGGAGAGCGGTGGTCCGTAAGGCTTACCGTTTC ] [+] EMBL BX624024 [ CTGGTTTTCTTACTAAAATATCAACTTCGGTCACAGTTTTGGNTTTGCANTTTGACAAACAGTGACTTGAGTGATTTTCTCTCACCTCGTGATGCCACAAGCCCAATACTGTTCATTGCAATACAGTGCAAAAATTGTn ] [-] EMBL BX609722 [ GCCCAATACTGTTCATTGCAATACAGTGCAAAAATTGTCATAAACTGCAGTTTGAGAGCAAGTCATTAACACGGCAATAAGGCAAAAAATGCAAATTAAGCCCTGGAGATCTGTAAAATAATGCGGACCTTTAGCAAAAGCATGAGCGCACGTAAAATTAATGTTCAACAATACAACAAAACATAC AAAAAAACACACACACTCACACATACAAAACGTACACACAAGAGCAAACAAAAGATAATCACATGATGTAAAAACGGTCTCTTTACGATTCGAGTAACCGGGAGAGCGGTGGTCCGTAAGGCTTACCGTTTCGTTTTTCGTAAATGTTAATATATCGCAGCAGTGCAGTACTGTCCTACAAGAGTAATGAGTTTCGTGTCAGTTTTAGTCTCAGTTCCTACTAGGCATCATTGGGAAGTTGAGAAATAGGAGAACGATTAGCACACCTTCCCGCACGAAACGCAGCTTACAAGCAAATATAGTTACCCCCAAACTGTACCACTCGTACCACTGAGACACAACCGCGGCATCGAGGGATTCGGTCGCCCTTTCCGTTTTGCTTCATCAAGTTGCCAGTTTGTGCGAGCACGCAATCGGGTGTACACGTTCCGGTTCGCAGCATCTAGCGATAGAACTTCACCTCCGCATCGACGCAGTCTTTCATGAGTTCGTCCAGCTCGT ] [-] EMBL BX606598 [ ACACACTCACACATACAAAACGTACACACAAGAGCAAACAAAAGATAATCACATGATGTAAAAACGGTCTCTTTACGATTCGAGTAACCGGGAGAGCGGTGGTCCGTAAGGCTTACCGTTTCGTTTTTCGTAAATGTTAATATATCGCAGCAGTGCAGTACTGTCCTACAAGAGTAATGAGTTTC GTCAGTTTTAGTCTCAGTTCCTACTAGGCATCATTGGGAAGTTGAGAAATAGGAGAACGATTAGCACACCTTCCCGCACGAAACGCAGCTTACAAGCAAATATAGTTACCCCCAAACTGTACCACTCGTACCACTGAGACACAACCGCGGCATCGAGGGATTCGGTCGCCCTTTCCGTTTTGCTTCATCAAGTTGCCAGTTTGTGCGAGCACGCAATCGGGTGTACACGTTCCGGTTCGCAGCATCTAGCGATAGAACTTCACCTCCGCCTCGACGCAGTCTTTCATGAGTTCGTCCAGCTCGTGGCTAGCTT] consensusID : consensus_7920#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence [GGTTCATTACGAAGACGATCTTGTTGTTGCTTCACACGATCACATTTGGCGCATTCGGCCGACATAGGTTTTCGCATTTGGGTATATTATTGATAAATGTATATGTAGTTTATGCATTATCATCCACATTGCCTTGCCTGTCTCGTATTGAAATCTTTCAAAGCCAAAGAAAACATCCGATTTCATCGCTATTATATTGGTTCCTATCGTATGCCAGCTTTTCTCAGCACATTCTTTTCGTCTAATAGTTTCGAGCTCCACTGTTTATCGTCTTTTTATTATTATTTGGTTCATTACGAAGACGATCTTGTTGTTGCTTCACACGATCACATTTGGCGCATTCGGCCGACATAGGTTTTCGCATTTGGGTATAATATTGATAAATGTATATGTAGTTTATGCATT] [-] EMBL BX614413 [GGTTCATTACGAAGACGATCTTGTTGTTGCTTCACACGATCACATTTGGCGCATTCGGCCGACATAGGTTTTCGCATTTGGGTATATTATTGATAAATGTATATGTAGTTTATGCATTATCATCCACATTGCCTTGCCTGTCTCGTATTGAAATCTTTCAAAGCCAAAGAAAACATCCGATTTCATCGCTATTATATTGGTTCCTATCGTATGCCAGCTTTTCTCAGCACATTCTTTTCGTCTAATAGTTTCGAGCTCCACTGTTTATCGTCTTTTTATTATTATTTGGTTCATTACGAAGACGATCTTGTTGTTGCTTCACACGATCACATTTGGCGCATTCGGCCGACATAGGTTTTCGCATTTGGGTATAATATTGATAAATGTATATGTAGTTTATGCATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7920#0 ATGTTTTTTTTTATTATTATTTGGTTCATTACGAAGACGATCTTGTTGTTGCTTCACACG 60 consensus_7920#1 ----------------------GGTTCATTACGAAGACGATCTTGTTGTTGCTTCACACG 38 ************************************** consensus_7920#0 ATCACATTTGGCGCATTCGGCCGACATAGGTTTTCGCATTTGGGTATATTATTGATAAAT 120 consensus_7920#1 ATCACATTTGGCGCATTCGGCCGACATAGGTTTTCGCATTTGGGTATATTATTGATAAAT 98 ************************************************************ consensus_7920#0 GTATATGTAGTTTATGCATTATCATCCACATTGCCTTGCCTGTCTCGTATTGAAATCTTT 180 consensus_7920#1 GTATATGTAGTTTATGCATTATCATCCACATTGCCTTGCCTGTCTCGTATTGAAATCTTT 158 ************************************************************ consensus_7920#0 CAAAGCCAAAGAAAACATCCGATTTCATCGCTATTATATTGGTTCCTATTGTATGCCAGC 240 consensus_7920#1 CAAAGCCAAAGAAAACATCCGATTTCATCGCTATTATATTGGTTCCTATCGTATGCCAGC 218 ************************************************* ********** consensus_7920#0 TTTTCTCAGCACATTCTTTTCGTCTAATAGTTTCGAGCTCCACTGTTTATCGTCTTTTTT 300 consensus_7920#1 TTTTCTCAGCACATTCTTTTCGTCTAATAGTTTCGAGCTCCACTGTTTATCGTCTTTTTA 278 *********************************************************** consensus_7920#0 TTTTTGTTTTGCTTTGCGGACTTTGCGCGATTCGTTAAACTGTTGTTCAATCCATTTTTC 360 consensus_7920#1 TTATTATTTGGTT-------CATTACGAAGACGATCTTGTTGTTGCTTCACACGATCACA 331 ** ** *** * * * ** ** * ***** * * * * consensus_7920#0 GTTTACGGAGTTTGAGAATATTATTATGCGAATAACTAGGTTTTGTTTCGTTTTCGATTA 420 consensus_7920#1 TTTGGCGCATTCGGCCGACATAGGTTTTCGCAT--TTGGGTATAATATTGAT--AAATGT 387 ** ** * * * * ** * * ** ** * *** * * * * * ** consensus_7920#0 CTACG-AGTCAATAGAGGTTGGAATGGGCGTGCCTTTGCACCACTACACCGGGGATGATC 479 consensus_7920#1 ATATGTAGTTTATGCATT------------------------------------------ 405 ** * *** ** * consensus_7920#0 TGCAGTCTAGTATTGATTATTTGGCTGAAATCAAATGCTCAATGGATGCTAAATTCAAAT 539 consensus_7920#1 ------------------------------------------------------------ consensus_7920#0 ATAATCTGCTACTCCTACAGCCTATTCAAATGGAATGGCATTCATACTCCAACAGAGGGG 599 consensus_7920#1 ------------------------------------------------------------ consensus_7920#0 TTACAATGTTACAACTGAGAGACACGCGCTAGATTTTTGTTTTTGTCATTCAAAACACGA 659 consensus_7920#1 ------------------------------------------------------------ consensus_7920#0 GAAAGAACGGAGCCATACATTTCGATGTTGTTAGCGCCATTTGCAACGAAAATACACACA 719 consensus_7920#1 ------------------------------------------------------------ consensus_7920#0 GATAATAACATCCTTTTAGGATAACTAAACATATAACACGTCATGCAAATAATAACGAGC 779 consensus_7920#1 ------------------------------------------------------------ consensus_7920#0 AAGCCCTATCTTGGAATGCAATTTCAGTTTAGAATGCGATGAATACTTGTTTAAGGAAAT 839 consensus_7920#1 ------------------------------------------------------------ consensus_7920#0 CTGGTTTTCTTACTAAAATATCAACTTCGGTCACAGTTTTGGTTTTGCAATTTGACAAAC 899 consensus_7920#1 ------------------------------------------------------------ consensus_7920#0 AGTGACTTGAGTGATTTTCTCTCACCTCGTGATGCCACAAGCCCAATACTGTTCATTGCA 959 consensus_7920#1 ------------------------------------------------------------ consensus_7920#0 ATACAGTGCAAAAATTGTCATAAACTGCAGTTTGAGAGCAAGTCATTAACACGGCAATAA 1019 consensus_7920#1 ------------------------------------------------------------ consensus_7920#0 GGCAAAAAATGCAAATTAAGCCCTGGAGATCTGTAAAATAATGCGGACCTTTAGCAAAAG 1079 consensus_7920#1 ------------------------------------------------------------ consensus_7920#0 CATGAGCGCACGTAAAATTAATGTTCAACAATACAACAAAACATACAAAAAAACACACAC 1139 consensus_7920#1 ------------------------------------------------------------ consensus_7920#0 ACTCACACATACAAAACGTACACACAAGAGCAAACAAAAGATAATCACATGATGTAAAAA 1199 consensus_7920#1 ------------------------------------------------------------ consensus_7920#0 CGGTCTCTTTACGATTCGAGTAACCGGGAGAGCGGTGGTCCGTAAGGCTTACCGTTTCGT 1259 consensus_7920#1 ------------------------------------------------------------ consensus_7920#0 TTTTCGTAAATGTTAATATATCGCAGCAGTGCAGTACTGTCCTACAAGAGTAATGAGTTT 1319 consensus_7920#1 ------------------------------------------------------------ consensus_7920#0 CGTCAGTTTTAGTCTCAGTTCCTACTAGGCATCATTGGGAAGTTGAGAAATAGGAGAACG 1379 consensus_7920#1 ------------------------------------------------------------ consensus_7920#0 ATTAGCACACCTTCCCGCACGAAACGCAGCTTACAAGCAAATATAGTTACCCCCAAACTG 1439 consensus_7920#1 ------------------------------------------------------------ consensus_7920#0 TACCACTCGTACCACTGAGACACAACCGCGGCATCGAGGGATTCGGTCGCCCTTTCCGTT 1499 consensus_7920#1 ------------------------------------------------------------ consensus_7920#0 TTGCTTCATCAAGTTGCCAGTTTGTGCGAGCACGCAATCGGGTGTACACGTTCCGGTTCG 1559 consensus_7920#1 ------------------------------------------------------------ consensus_7920#0 CAGCATCTAGCGATAGAACTTCACCTCCGCATCGACGCAGTCTTTCATGAGTTCGTCCAG 1619 consensus_7920#1 ------------------------------------------------------------ consensus_7920#0 CTCGTGGCTAGCTT 1633 consensus_7920#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||