These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7921#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1865 fasta sequence [CATATAGTTTGTANTTGTTTACTTCTTTTTGTTACTAATTAATTGTACTAGTTCCTTTGGGTGGGCGATTTTGTTTGTTTGGGGCGGTAAATGTGTGTGTTTTTTTTTTAATCAACACTGTTCTGCTCGGCCGTGATGATGATGATGCCCCAGAGCAGAGTGAAAGGGAACCATTTATGTATCCTGTTCCTTATTCATTCGTGTGTTTGTGTGTGCGTGCGTGCGTGTGTGTGTATGTGCGTACATTACAATTGCGCGACGATTGCTTCGCAGTCGGAAGTAGTATTAGTTTTATAAATTTGTTTAATTTGTTTTTTTTTTTTGTATTTTTGTTTTTTGCTCCGACGCTGTGCAACGTCATCCTCCCTTTCGCATAGCTATAATTTAACACACCCATATCACGAACGTCAAACGTTCCGTGTGCTAATACCCCAGGGGGGAGGTGAATTGTACGTGAATTGTGANAGTGGGTGTGTGGCGNGTGTGGCAAGTGTGTGTGTGTGTGANTTGGTGTTTGATATTTCTAGTTCAGTTTTCATTTTGACAGCCGCCTCCACTCCTCGCCGCCACCAACCCGATTTCAAAGTAAGAACTCTTCACCCTTCCTCCCCCCCCCCCTCTCCCTTCTTTATTAAATGCATAATATAAATATATATATTTAAAACAAACCTATATGAATATATCAAAATCGTAAAAGAAGAAACGACGAAACCACTAAGCAAGCAACACACACACACACATACTTTCATCCTATAGATAAATTACATCAATTCCTTCGAAAAAAAACAAGAAAGAAAACAAAACAAATACAAGAAGTAGCACGGTGAAAGTAGCGTTTAAACAATTGGGTACAGAAAGGGAATTATCTTAAATCTCTTAGTACTGTAATTGAATCTGTGTTCTGTTTTCTATTGGTGCGTTCTGTGTGGGGTTCAAAACGCACCGACACGCAAAAACCGCCCTTCTCAGGGGAAAGCGAGAGTAAGGGCGTTTCCGTGCGCGCGCGCGCGCGTGTGTATGTGTGTTTGTAGAGTGGGAAATAAATAAACAAAAC-AAAAAAGTCAAGAAAAATCATTCTTCGAAATCAGAATTAGTCATTACCTAGCAACGGGAAGCAAAGTTATCCGCACTGGTCGGAGCCATAGTAGTTGAAGCACGTGAAAAGTGAGAAGAGTAAGACGAAACAAACAAACAAACAAAC--AAAAACAAGGGAATGGTGAATAAGCGGGGGAGGTGGGGTATATGAAGTGAGCATGGAGGACGAGGAAGAGAGGAAAGAAG-AAAAAAATACTTATAACAAATAATCTTATGGTTGATAAAAATATTTACATATTATTTCTAAGAAACACAACAACAACAAAACCAACT--AAAAAAAAATTAAAGAACTATTGAACAAAACAAAACAACAAACACATAAAATCTGAAATTCGCCACGTGGACGAACAACAGTTGGTGTACGTGATTAACGAGAAGGTAGCAGAAAGGTAGTCCCGAGGAAAACGGCAAAGCATATAACACACTCATAATCAGTGAACAAGCTCCCT-GGCAAGGCGAACGTAGAAAACACAAACACACTCTAAAAACGAACAAATGAGAGGAAAGAAGAAAAAAAATACTTATAACAAATAATCTTATGGTTGATAAAAATATTTACATATTATTTCTAAGAAACACAACAACAACAAAACCAACTAAAAAAAAAAATTAAAGAACTTTTGAACAAAACAAAACAACAAACACAAAGGATCTGAAATTCGCCACGTGGACGAACAACAGTTGGTGTACGTGATTGATGAGAAGGAAGCAGTAAGGTAGTCCCAAGGAAAACGGCAAAGCATAACACACTCATAACCAGTGAATAAACG] [+] EMBL BX626286 [CATATAGTTTGTANTTGTTTACTTCTTTTTGTTACTAATTAATTGTACTAGTTCCTTTGGGTGGGCGATTTTGTTTGTTTGGGGCGGTAAATGTGTGTGTTTTTTTTTTAATCAACACTGTTCTGCTCGGCCGTGATGATGATGATGCCCCAGAGCAGAGTGAAAGGGAACCATTTATGTATCCTGTTCCTTATTCATTCGTGTGTTTGTGTGTGCGTGCGTGCGTGTGTGTGTATGTGCGTACATTACAATTGCGCGACGATTGCTTCGCAGTCGGAAGTAGTATTAGTTTTATAAATTTGTTTAATTTGTTTTTTTTTTTTGTATTTTTGTTTTTTGCTCCGACGCTGTGCAACGTCATCCTCCCTTTCGCATAGCTATAATTTAACACACCCATATCACGAACGTCAAACGTTCCGTGTGCTAATACCCCAGGGGGGAGGTGAATTGTACGTGAATTGTGANAGTGGGTGTGTGGCGNGTGTGGCAAGTGTGTGTGTGTGTGANTTGGTGTTTGATATTTCTAGTTCAGTTTTCATTTTGACAGCCGCCTCCACTCC ] [+] EMBL BM621220 [ ccgGATATTTCTAGTTCAGTTTTCATTTTGACAGCCGCCTCCACTCCTCGCCGCCACCAACCCGATTTCAAAGTAAGAACTCTTCACCCTTCCTCCCCCCCCCCCTCTCCCTTCTTTATTAAATGCATAATATAAATATATATATTTAAAACAAACCTATATGAATATATCAAAATCGTAAAAGAAGAAACGACGAAACCACTAAGCAAGCAACACACACACACACATACTTTCATCCTATAGATAAATTACATCAATTCCTTCGAAAAAAAACAAGAAAGAAAACAAAACAAATACAAGAAGTAGCACGGTGAAAGTAGCGTTTAAACAATTGGGTACAGAAAGGGAATTATCTTAAATCTCTTAGTACTGTAATTGAATCTGTGTTCTGTTTTCTATTGGTGCGTTCTGTGTGGGGTTCAAAACGCACCGACACGCAAAAACCGCCCTTCTCAGGGGAAAGCGAGAGTAAGGGCGTTTCCGTGCGCGCGCGCGCGCGTGTGTATGTGTGTTTGTAGAGTGGGAAATAAATAAACAAAAC AAAAAAGTCAAGAAAAATCATTCTTCGAAATCAGAATTAGTCATTACCTAGCAACGGGAAGCAAAGTTATCCGCACTGGTCGGAGCCATAGTAGTTGAAGCACGTGAAAAGTGAGAAGAGTAAGACGAAACAAACAAA ] [+] EMBL BM605895 [ ccgcaAAACGACGAAACCACTAAGCAAGCAACACACACACACACATACTTTCATCCTATAGATAAATTACATCAATTCCTTCGAAAAAAAACAAGAAAGAAAACAAAACAAATACAAGAAGTAGCACGGTGAAAGTAGCGTTTAAACAATTGGGTACAGAAAGGGAATTATCTTAAATCTCTTAGTACTGTAATTGAATCTGTGTTCTGTTTTCTATTGGTGCGTTCTGTGTGGGGTTCAAAACGCACCGACACGCAAAAACCGCCCTTCTCAGGGGAAAGCGAGAGTAAGGGCGTTTCCGTGCGCGCGCGCGCGCGTGTGTATGTGTGTTTGTAGAGTGGGAAATAAATAAACAAAAC AAAAAAGTCAAGAAAAATCATTCTTCGAAATCAGAATTAGTCATTACCTAGCAACGGGAAGCAAAGTTATCCGCAGTGGTCGGAGCCATAGTAGTTGAAGCACGTGAAAAGTGAGAAGAGTAAGACGAAACAAACAAACAAACAAAC AAAAACAAGGGAATGGTGAATAAGCGGGGGAGGTGGGGTATATGAAGTGAGCATGGAGGACGAGGAAGAGAGGAAAGAAGAAAAAAAATACTTATAACAAAT ] [+] EMBL BX615180 [ AAAAAACAAGAAAGAAAACAAAACAAATACAAGAAGTAGCACGGTGAAAGTAGCGTTTAAACAATTGGGTACAGAAAGGGAATTATCTTAAATCTCTTAGTACTGTAATTGAATCTGTGTTCTGTTTTCTATTGGTGCGTTCTGTGTGGGGTTCAAAACGCACCGACACGCAAAAACCGCCCTTCTCAGGGGAAAGCGAGAGTAAGGGCGTTTCCGTGCGCGCGCGCGCGCGTGTGTATGTGTGTTTGTAGAGTGGGAAATAAATAAACAAAACAAAAAAAGTCAAGAAAAATCATTCTTCGAAATCAGAATTAGTCATTACCTAGCAACGGGAAGCAAATTTATCCGCACTGGTCGGAGCCATAGTAGTTGAAGCACGTGAAAAGTGAGAAGAGTAAGACGAAACAAACAAACAAACAAAC AAAAACAAGGGAATGGTGAATAAGCGGGGGAGGTGGGGTATATGAAGTGAGCATGGAGGACGAGGAAGAGAGTAAAGAAGAAAAAAAATACTTATAACAAATAATCTTATGGTTGATAAAAATATTTACATATTATTTCTAAGAAACACAACAACAAC ] [+] EMBL BX618678 [ AGTCAAGAAAAATCATTCTTCGAAATCAGAATTAGTCATTACCTAGCAACGGGAAGCAAAGTTATCCGCACTGGTCGGAGCCATAGTAGTTGAAGCACGTGAAAAGTGAGAAGAGT ] [+] EMBL BM628194 [ ccgGCAAAGTTATCCGCACTGGTCGGAGCCATAGTAGTTGAAGCACGTGAAAAGTGAGAAGAGTAAGACGAAACAAACAAACAAACAAACAAAAAAACAAGGGAATGGTGAATAAGCGGGGGAGGTGGGGTATATGAAGTGAGCATGGAGGACGAGGAAGAGAGGAAAGAAG AAAAAAATACTTATAACAAATAATCTTATGGTTGATAAAAATATTTACATATTATTTCTAAGAAACACAACAACAACAAAACCAACT AAAAAAAAATTAAAGAACTATTGAACAAAACAAAACAACAAACACATAAAATCTGAAATTCGCCACGTGGACGAACAACAGTTGGTGTACGTGATTAACGAGAAGGTAGCAGAAAGGTAGTCCCGAGGAAAACGGCAAAGCATATAACACACTCATAATCAGTGAACAAGCTCCCT GGCAAGGCGAACGTAGAAAACACAAACACACTCTAAAAACGA ] [+] EMBL BX614836 [ AAATACTTATAACAAATAATCTTATGGTTGATAAAAATATTTACATATTATTTCTAAGAAACACAACAACAACAAAACCAACTAAAAAAAAAAATTAAAGAACTTTTGAACAAAACAAAACAACAAACACAAAGGATCTGAAATTCGCCACGTGGACGAACAACAGTTGGTGTACGTGATTGATGAGAAGGAAGCAGTAAGGTAGTCCCAAGGAAAACGGCAAAGC ATAACACACTCATAATCAGTGAAGAAGCTCCCTAGGCAAGGCGAACGTAGAAAACACAAACACACTCTAAAAACAAACAAATGAGAGGAAAGAAGAAAAAAAATACTTATAACAAATAATCTTATGGTTGATAAAAATATTTACATATTATTTCTAAGAAACACAACAACAACAAAACCAACTAAAAAAAAAAATTAAAGAACTTTTGAACAAAACAAAACAACAAACACAAAGGATCTGAAATTCGCCACGTGGACGAACAACAGTTGGTGTACGTGATTGATGAGAAGGAAGCAGTAAGGTAGTCCCAAGGAAAACGGCAAAGCATAACACACTCATAACCAGTGAATAAACG] consensusID : consensus_7921#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence [CCGCCCACGCGTCCGAAGAAACACAACAACAACAAAACCAACTAAAAAAAAAATTAAAGAACTATTGAACAAAACAAAACAACAAACACATAAAATCTGAAATTCGCCACGTGGACGAACAACAGTTGGTGTACGTGATTAACGAGAAGGTAGCAGAAAGGTAGTCCCGAGGAAAACGGCAAAGCATATAACACACTCATAATCAGTGAACAAGCTCCCTGGCAAGGCGAACGTAGAAAACACAAACACACTCTAAAAACAAACAAATGAGAGAAAAAAAAACAAAACAAAACAAGAAGATAGGAAGAGAAACAGTCCCCCCCCTTTTTTGTACTAATTCAACTATTCCAGTGAATAAACGAAGAAAACATACCTTAGTGCGTATGTTTCTCTGTGTGTGTGTGTGTGAATGAAGATTACTAAAGTGGTAAAATGCGGGGAAGGTATGTACTTGACATTATACATCATATTGATATATGCCTAAACATATACAAAACCAACAACTCTCCTCCAACACAGCACACACACACACATACACTCGTACTTACTACCATCGGAGCATCAATAA] [+] EMBL BM643315 [CCGCCCACGCGTCCGAAGAAACACAACAACAACAAAACCAACTAAAAAAAAAATTAAAGAACTATTGAACAAAACAAAACAACAAACACATAAAATCTGAAATTCGCCACGTGGACGAACAACAGTTGGTGTACGTGATTAACGAGAAGGTAGCAGAAAGGTAGTCCCGAGGAAAACGGCAAAGCATATAACACACTCATAATCAGTGAACAAGCTCCCTGGCAAGGCGAACGTAGAAAACACAAACACACTCTAAAAACAAACAAATGAGAGAAAAAAAAACAAAACAAAACAAGAAGATAGGAAGAGAAACAGTCCCCCCCCTTTTTTGTACTAATTCAACTATTCCAGTGAATAAACGAAGAAAACATACCTTAGTGCGTATGTTTCTCTGTGTGTGTGTGTGTGAATGAAGATTACTAAAGTGGTAAAATGCGGGGAAGGTATGTACTTGACATTATACATCATATTGATATATGCCTAAACATATACAAAACCAACAACTCTCCTCCAACACAGCACACACACACACATACACTCGTACTTACTACCATCGGAGCATCAATAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7921#0 CATATAGTTTGTANTTGTTTACTTCTTTTTGTTACTAATTAATTGTACTAGTTCCTTTGG 60 consensus_7921#1 ------------------------------------------------------------ consensus_7921#0 GTGGGCGATTTTGTTTGTTTGGGGCGGTAAATGTGTGTGTTTTTTTTTTAATCAACACTG 120 consensus_7921#1 ------------------------------------------------------------ consensus_7921#0 TTCTGCTCGGCCGTGATGATGATGATGCCCCAGAGCAGAGTGAAAGGGAACCATTTATGT 180 consensus_7921#1 ------------------------------------------------------------ consensus_7921#0 ATCCTGTTCCTTATTCATTCGTGTGTTTGTGTGTGCGTGCGTGCGTGTGTGTGTATGTGC 240 consensus_7921#1 ------------------------------------------------------------ consensus_7921#0 GTACATTACAATTGCGCGACGATTGCTTCGCAGTCGGAAGTAGTATTAGTTTTATAAATT 300 consensus_7921#1 ------------------------------------------------------------ consensus_7921#0 TGTTTAATTTGTTTTTTTTTTTTGTATTTTTGTTTTTTGCTCCGACGCTGTGCAACGTCA 360 consensus_7921#1 ------------------------------------------------------------ consensus_7921#0 TCCTCCCTTTCGCATAGCTATAATTTAACACACCCATATCACGAACGTCAAACGTTCCGT 420 consensus_7921#1 ------------------------------------------------------------ consensus_7921#0 GTGCTAATACCCCAGGGGGGAGGTGAATTGTACGTGAATTGTGANAGTGGGTGTGTGGCG 480 consensus_7921#1 ------------------------------------------------------------ consensus_7921#0 NGTGTGGCAAGTGTGTGTGTGTGTGANTTGGTGTTTGATATTTCTAGTTCAGTTTTCATT 540 consensus_7921#1 ------------------------------------------------------------ consensus_7921#0 TTGACAGCCGCCTCCACTCCTCGCCGCCACCAACCCGATTTCAAAGTAAGAACTCTTCAC 600 consensus_7921#1 ------------------------------------------------------------ consensus_7921#0 CCTTCCTCCCCCCCCCCCTCTCCCTTCTTTATTAAATGCATAATATAAATATATATATTT 660 consensus_7921#1 ------------------------------------------------------------ consensus_7921#0 AAAACAAACCTATATGAATATATCAAAATCGTAAAAGAAGAAACGACGAAACCACTAAGC 720 consensus_7921#1 ------------------------------------------------------------ consensus_7921#0 AAGCAACACACACACACACATACTTTCATCCTATAGATAAATTACATCAATTCCTTCGAA 780 consensus_7921#1 ------------------------------------------------------------ consensus_7921#0 AAAAAACAAGAAAGAAAACAAAACAAATACAAGAAGTAGCACGGTGAAAGTAGCGTTTAA 840 consensus_7921#1 ------------------------------------------------------------ consensus_7921#0 ACAATTGGGTACAGAAAGGGAATTATCTTAAATCTCTTAGTACTGTAATTGAATCTGTGT 900 consensus_7921#1 ------------------------------------------------------------ consensus_7921#0 TCTGTTTTCTATTGGTGCGTTCTGTGTGGGGTTCAAAACGCACCGACACGCAAAAACCGC 960 consensus_7921#1 ------------------------------------------------------------ consensus_7921#0 CCTTCTCAGGGGAAAGCGAGAGTAAGGGCGTTTCCGTGCGCGCGCGCGCGCGTGTGTATG 1020 consensus_7921#1 ------------------------------------------------------------ consensus_7921#0 TGTGTTTGTAGAGTGGGAAATAAATAAACAAAACAAAAAAGTCAAGAAAAATCATTCTTC 1080 consensus_7921#1 ------------------------------------------------------------ consensus_7921#0 GAAATCAGAATTAGTCATTACCTAGCAACGGGAAGCAAAGTTATCCGCACTGGTCGGAGC 1140 consensus_7921#1 ------------------------------------------------------------ consensus_7921#0 CATAGTAGTTGAAGCACGTGAAAAGTGAGAAGAGTAAGACGAAACAAACAAACAAACAAA 1200 consensus_7921#1 ------------------------------------------------------------ consensus_7921#0 CAAAAACAAGGGAATGGTGAATAAGCGGGGGAGGTGGGGTATATGAAGTGAGCATGGAGG 1260 consensus_7921#1 ------------------------------------------------------------ consensus_7921#0 ACGAGGAAGAGAGGAAAGAAGAAAAAAATACTTATAACAAATAATCTTATGGTTGATAAA 1320 consensus_7921#1 ------------------------------------------------------------ consensus_7921#0 AATATTTACATATTATTTCTAAGAAACACAACAACAACAAAACCAACTAAAAAAAAA-TT 1379 consensus_7921#1 -----CCGCCCACGCGTCCGAAGAAACACAACAACAACAAAACCAACTAAAAAAAAAATT 55 * * * * ************************************* ** consensus_7921#0 AAAGAACTATTGAACAAAACAAAACAACAAACACATAAAATCTGAAATTCGCCACGTGGA 1439 consensus_7921#1 AAAGAACTATTGAACAAAACAAAACAACAAACACATAAAATCTGAAATTCGCCACGTGGA 115 ************************************************************ consensus_7921#0 CGAACAACAGTTGGTGTACGTGATTAACGAGAAGGTAGCAGAAAGGTAGTCCCGAGGAAA 1499 consensus_7921#1 CGAACAACAGTTGGTGTACGTGATTAACGAGAAGGTAGCAGAAAGGTAGTCCCGAGGAAA 175 ************************************************************ consensus_7921#0 ACGGCAAAGCATATAACACACTCATAATCAGTGAACAAGCTCCCTGGCAAGGCGAACGTA 1559 consensus_7921#1 ACGGCAAAGCATATAACACACTCATAATCAGTGAACAAGCTCCCTGGCAAGGCGAACGTA 235 ************************************************************ consensus_7921#0 GAAAACACAAACACACTCTAAAAACGAACAAATGAGAGGAAAGAAGAAAAAAAATACTTA 1619 consensus_7921#1 GAAAACACAAACACACTCTAAAAACAAACAAATGAGAGAAAAAAAAACAAAACAAAACAA 295 ************************* ************ *** ** * **** * * * consensus_7921#0 TAA--CAAATAATCTTATGGTTGATAAAAATATTTACAT-------ATTATTTCTAAGAA 1670 consensus_7921#1 GAAGATAGGAAGAGAAACAGTCCCCCCCCTTTTTTGTACTAATTCAACTATTCCAGTGAA 355 ** * * * ** * *** * * **** * *** consensus_7921#0 -ACACAACAACAACAAAACCAACTAAAAAAAAAAATTAAAGAACTTTTGAACAAAACAAA 1729 consensus_7921#1 TAAACGAAGAAAACATACCTTAGTGCGTATGTTTCTCTGTGTGTGTGTGTGTGAATGAAG 415 * ** * * **** * * * * * * * * ** ** ** consensus_7921#0 ACAACAAACACAAAGGATCTGAAATTCGCCACGTGGACGA------ACAACA-GTTGGTG 1782 consensus_7921#1 ATTACTAAAGTGGTAAAATGCGGGGAAGGTATGTACTTGACATTATACATCATATTGATA 475 * ** ** * * * ** ** *** ** *** * consensus_7921#0 TACGTGATTGATGAGAAGGAAGCAGTAAGGTAGTCCCAA---GGAAAACGGCAAAGCATA 1839 consensus_7921#1 TATGCCTAAACATATACAAAACCAACAACTCTCCTCCAACACAGCACACACACACACATA 535 ** * * * ** ** ** **** * * ** * **** consensus_7921#0 A---CACACTCATAACCAGTGAATAAACG---- 1865 consensus_7921#1 CACTCGTACTTACTACCATCGGAGCATCAATAA 568 * *** * **** * * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||