These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7926#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1857 fasta sequence [GTGGTGTGTGCGCGATTGGAAGTTTTGGTTGATTAAGCCCAATGTAAAACATTAGCAATGATGGAAGTGCAGCTAAAATCCGTTGCTTAATTCTATCGCATATTGTTGATGTAGTTGTGATTCTTGTTGTTAAAGGAAACCCGATTTTAAAGCACTCTCTATTTATCCAATAACATGAGACTAAAGCATTTAGCATTCCAACTGATGGCAAGCGTTAAACCATGCGTTGTTGTTAATAAGTTCACTTCAAAAGGAACATTGTATCGAAAAAAAAGGATTATTAGCATAACAAGAAACAGGGCGACCACTTTCTTTCAGCAGGTCAAACGTACACTTATATTATCTTAAACAAATGCTTAGAAACGTTACTTGCTTACAGAGATGTATTTTAGTAAAGAAAAAACCCAAGAATGCGTTTTAAACGTTATGGTTATGTTATGTGCTTTTGTTCAGGGCTTATTTACACCAGATTCAAGCTAGTCATTATTATTGTAGCAAATATTTAAAAGACATGTTGATTGAAAATCCACTTTTATGAGTTGCGCTACTGCTAAATAGCGCAAC-AAAAAAAAAAGACAAAACTATCAAAGTATATAAGTAACGTATTAAAAAGGCTATCCTATTGAAGTAGCATCGGAAAATGCATAGTGCACCCCGCAAACACATTGGTGCATTGGTGTGTGTGTGTGTGTGTGTGTGCATTGGCAGTGCGTTTATAGTTGTAGTAGAAGTAGCACACACCTCCATGGCATGGCATGAGCTCAGTATATACATACATACATGTATACATATTCAATATGCCCGCACAGTATAATCTTGTCCATTCATCATTAGGCGCATGGAATCGAACGATTCAGGTAAAAAACGTATATAACAATATATATTATTAACTATTAGCATATTGG-AAAAAAACCGAAAGATTTCATCACAATCGTGTCGACCGATAATCGTTTGCATCGTGAAGAATGCGTGAATTCCCGTTTAGAAAGGTTAGTGCAGAAGAATGTAACAGAGAGTGGCAGAAGAAGCCGATAAAGAAGCCGTGCACGT-CA------ATTGGAAAAATTGCTTCGAGCACTGGCTAGCTACGATCGTTTGCGGCATGTCGTGTCCGGCAAGGTAGGAGCTTCACGGTGCATTGGACACATTACTATCGCACGCCATACACATATCAACACCATTAGGAACGATTAACATACATATCGATTACATATCAGCTCTATAAAAGCATAGTAAAGGAAAGAAAAAAACGAAACAAATCCTACCACTTCAGCGGATCAGGCCCCGCCAAAGTGTCTCCTACACATGTCACATTTTTTAGCAACGATGCCACGCGCACCACGCATCCATCGCTCTTAACGCAAGCAGCTGTTTGCAGTTTTGCGCGGTAGAGTAAACGCAGCAGCAAAATGCATGCATTTGGCTGTGGCGCGTGGTAATAGCGTTTAGGGATTATTCACAGCCATTTAAGGTTGTGGTGTTAAGTATGGTGTTGTTGTTCAATGAGTACGAACTATTGCTAGCATTTAGTGGCGTGTGTATACATGTTTAGACGGGCGTTTTCTGTTA-TCTTAGCGAGGCTGCCG---AGTGGTGGATGGCGCGTACCGAGTATTAAACTTGCTTTTAGCTTTTAGCAATGTGTTTAAAACGGTGTTTAACTCTGCTGTCGCTGTAGACTACTGCGGTTTTGTGCTTATCATGCGTAACATATGGTTTGAGTTTCAGCACACGATCGATTCGTGGCCAACTTCATGGAACAGGCTTAAGTAACCAGTAAAAACAAAAATCACATTTTACTCAGAACGTGCTTATTGAAGGAATCGACTCGAAATACGAGTTGGGAGTGTTTAGTACAATTTA] [+] EMBL BX603254 [GTGGTGTGTGCGCGATTGGAAGTTTTGGTTGATTAAGCCCAATGTAAAACATTAGCAATGATGGAAGTGCAGCTAAAATCCGTTGCTTAATTCTATCGCATATTGTTGATGTAGTTGTGATTCTTGTTGTTAAAGGAAACCCGATTTTAAAGCACTCTCTATTTATCCAATAACATGAGACTAAAGCATTTAGCATTCCAACTGATGGCAAGCGTTAAACCATGCGTTGTTGTTAATAAGTTCACTTCAAAAGGAAC ] [+] EMBL BM590420 [ ccgTTAGCAATGATGTAAGTGCAGCTAAAATCCGTTGCTTAATTCTATCGCATATTGTTGATGTAGTTGTGATTCTTGTTGTTAAAAGAAACCCGATTTTAAAGCACTCTCTATTTATCCAATAACATGAGACTAAAGCATTTAGCATTCCAACTGATGGCAAGCGTTAAACCATGCGTTGTTGTTAATAAGTTCACTTCAAAAGGAACATTGTATCGAAAAAAAAGGATTATTAGCATAACAAGAAACAGGGCGACCACTTTCTTTCAGCAGGTCAAACGTACACTTATATTATCTTAAACAAATGCTTAGAAACGTTACTTGCTTACAGAGATGTATTTTAGTAAAGAAAAAACCCAAGAATGCGTTTTAAACGTTATGGTTATGTTATGTGCTTTTGTTCAGGGCTTATTTACACCAGATTCAAGCTAGTCATTATTATTGTAGCAAATATTTAAAAGACATGTTGATTGAAAATCCACTTTTATGAGTTGCGCTACTGCTAAATAGCGCAACAAAAAAAAAAAGACAAAACTATCAAAGTATATAAGTAACGTATTAAAAAGGCTATCCTATTGAAGTAGCATCGGAAAATGCATAGTGCACCCCGCAAACACATTGGTGC ] [+] EMBL BM617662 [ ccgATTTAACAGACATGTTGATTAAAAATCTATTTACATGAGTTGCGCTACTGCTAAACAGCGCAAC AAAAAAAAAACACAAAACTATCAAAGTATATAAGTAACGTATTAAAAAGGCTATCCTATTGAAGTAGCATCGGAAAATGCATAGTGCACCCCGCAAACACATTGGTGCATTGGTGTGTGTGTGTGTGTGTGTGTGCATTGGCAGTGCGTTTATAGTTGTAGTAGAAGTAGCACACACCTCCATGGCATGGCATGAGCTCAGTATATACATACATACATGTATACATATTCAATATGCCCGCACAGTATAATCTTGTCCATTCATCATTAGGCGCATGGAATCGAACGATTCAGGTAAAAAACGTATATAACAATATATATTATTAACTATTAGCATATTGGAAAAAAAACCGAAAGATTTCATCACAATCGTGTCGACCGATAATCGTTTGCATCGTGAAGAATGCGTGAATTCCCGTTTAGAAAGGTTAGTGCAGAAGAATGTAACAGAGAGTGGCAGAAGAAGCCGATAAAGAAGCCGTGCACGTGCACTGTCTATTGGAAAAATTGCTTCGAGCACTGGCTAGCTACGATCATTTGCGGCATGTTGTGTCCGGC ] [+] EMBL BX620318 [ ATGTATACATATTTAATATGCCCGCACAGTATAATCTTGTCCATTCATCATTAGGCGCATGGAATCGAACGATTCAGGTAAAAAACGNATATAACAATATATATTATTAACTATTAGCATATTGG AAAAAAACCGAAAGATTTCATCACAATCGTGTCGACCGATAATCGTTTGCATCGTGAACAATGCGTGAATTCCCGTTTAGAAAGGTTAGTGCAGAAGAATGTAACAGAGAGTGGCAGAAGAAGCCGATAAAGAAGCCGTGCACGT CA ATTGGAAAAATTGCTTCGAGCACTGGCTAGCTACGATCGTTTGCGGCATGTCGTGTCCGGCAAGGTAGGAGCTTCACGGTGCATTGGACACATTACTATCGCACGCCATACACATATCAACACCATTAGGAACGATTAACATACATATCGATTACATATCAGCTCTATAAAAGCATAGTAAAGGAAAGAAAAAAACGAAACAAATCCTACCACTTCAGCGGATCAGGGCCCGCCAAAGTGTCTCCTACACATGTCACATTTTTTAGCAACGATGCCACGCGCACCACGCATCCATCGCTCTTAACGCAAGCAGCTGTTT ] [+] EMBL BX617664 [ GCACGT CA ATTGGAAAAATTGCTTCGAGCACTGGCTAGCTACGATCGTTTGCGGCATGTCGTGTCCGGCAAGGTAGGAGCTTCACGGTGCATTGGACACATTACTATCGCACGCCATACACATATCAACACCATTAGGAACGATTAACATACATATCGATTACATATCAGCTCTATAAAAGCATAGTAAAGGAAAGAAAAAAACGAAACAAATCCTACCACTTCAGCGGATCAGGCCCCGCCAAAGTGTCTCCTACACATGTCACATTTTTTAGCAACGATGCCACGCGCACCACGCATCCATCGCTCTTAACGCAAGCAGCTGTTTGCAGTTTTGCGCGGTAGAGTAAACGCAGCAGCAAAATGCATGCATTTGGCTGTGGCGCGTGGTAATAGCGTTTAGGGATTATTCACAGCCATTTAAGGTTGTGGTGTTAAGTATGGTGTTGTTGTTCAATGAGTACGAACTATTGCTAGCATTTAGTGGCGTGTGTATACATGTTTAGACGTGCGTTTTCTGTTA TCTTAGCGAGGCTGCCG AGTGGTGGATGGCGCGTACCGAGTATTAAACTTGCTTTTAGCTTTTAGCAATGTGTTTAAAACGGTGTTTAACTCTGCTGTCGCTGTAGACTACTGCGGTTTTGTGCTTATCATGCGTAACATATGGTTTGAGTTTCAGCACACGATCGATTCGTGGCCAACTTCATGGAACAGGCTTAAGTAAC ] [+] EMBL BX618591 [ GATCGTTTGCGGCATGTCGTGTCCGGCAAGGTAGGAGCTTCACGGTGCATTGGACACATTACTATCGCACGCCATACACATATCAACACCATTAGGAACGATTAACATACATATCGATTACATATCAGCT TATAAAAGCATAGTAAAGGAAAGAAAAAAACGAAACAAATCCTACCACTTCAGCGGATCAGGCCCCGCCAAAGTGTCTCCTACACATGTCACATTTTTTAGCAACGATGCCACGCGCACCACGCATCCATCGCTCTTAACGCAAGCAGCTGTTTGCAGTTTTGCGCGGTAGAGTAAACGCAGCAGCAAAATGCATGCATTTGGCTGTGGCGCGTGGTAATAGCGTTTAGGGATTATTCACAGCCATTTAAGGTTGTGGTGTTAAGTATGGTGTTGTTGTTCAATGAGTACGAACTATTGCTAGCATTTAGTGGCGTGTGTATACATGTTTAGACGGGCGTTTTCTGTTA TCTTAGCGAGGCTGCCG AGTGGTGGATGGCGCGTACCGAGTATTAAACTTGCTTTTAGCTTT ] [+] EMBL BX617308 [ ACTTCAGCGGATCAGACCCCGCCAAAGTGTCTCCTACACATGTCACATTTTTTAGCAACGATGCCACGCGCACCACGCATCCATCGCACTTAACGCAAGCAGATGTTTGCAGTTTTGCGCGGTAGAGTAAACGCAGCAGCAAAATGCATGCATTTGGCTGTGGCGCGTGGTAATAGCGTTTAGGGATTATTCACAGCCATTTAAGGCTGTGGTGTTAAGTATGATGTTGTTGTTCAATGAG A GAACTATTGCTAGCATTTAGTGGCGTGTGTATACATGTTTAGACGGGCGTTTTCTGTTAGTCTTAGCCTCG TGCCGGGTGGTGGTGGTTGGCGCATACCGAGTATTAAACTTGCTTTTAGCTTTTAGCAACGTGTTTAAAACGGTGTTTAACTCTGCTGTCGCTGTAGACTACTGCTGTGTTGTGCTTATCCTGCGTAACATATGGTTTGAGTTTCAGCACACGATCGATTCGTGGCCAACTTCATGGAACAGGCTTAAGTAAACAGTAAAAACAAAAATCACATTTTACTCAGAACGTGCTTATTGAAGGAATCGACTCGAAATACGAGTTGGGAGTGTTTAGTACAATTTA] consensusID : consensus_7926#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence [AGCCCACTTTGCGTGCGATAGTACAGTAAGATACCACATTACTATCGCACGCCATACACATATCAACACCATTAGGAACGATTAACATACATATCGATTACATATCAGCTCTATAAAAGCATAGTAAAGGAAAGAAAAAAACGAAACAAATCCTACCACTTCAGCGGATCAGGCCCCGCCAAAGTGTCTCCTACACATGTCACATTTTTTAGCAACGATGCCACGCGCACCACGCATCCATCGCTCTTAACGCAAGCAGCTGTTTGCAGTTTTGCGCGGTAGAGTAAACGCAGCAGCAAAATGCATGCATTTGGCTGTGGCGCGTGGTAATAGCGTTTAGGGATTATTCACAGCCATTTAAGGTTGTGGTGTTAAGTATGGTGTTGTTGTTCAATGAGTACGAACTATTGCTAGCATTTAGTGGCGTGTGTATACATGTTTAGACGGGCGTTTTCTGTTATCTTAGCGAGGCTGCCGAGTGGTGGATGGCGCGTACCGAGTATTAAACTTGCTTTTAGCTTTTAGCAATGTGTTTTA] [+] EMBL BX616046 [AGCCCACTTTGCGTGCGATAGTACAGTAAGATACCACATTACTATCGCACGCCATACACATATCAACACCATTAGGAACGATTAACATACATATCGATTACATATCAGCTCTATAAAAGCATAGTAAAGGAAAGAAAAAAACGAAACAAATCCTACCACTTCAGCGGATCAGGCCCCGCCAAAGTGTCTCCTACACATGTCACATTTTTTAGCAACGATGCCACGCGCACCACGCATCCATCGCTCTTAACGCAAGCAGCTGTTTGCAGTTTTGCGCGGTAGAGTAAACGCAGCAGCAAAATGCATGCATTTGGCTGTGGCGCGTGGTAATAGCGTTTAGGGATTATTCACAGCCATTTAAGGTTGTGGTGTTAAGTATGGTGTTGTTGTTCAATGAGTACGAACTATTGCTAGCATTTAGTGGCGTGTGTATACATGTTTAGACGGGCGTTTTCTGTTATCTTAGCGAGGCTGCCGAGTGGTGGATGGCGCGTACCGAGTATTAAACTTGCTTTTAGCTTTTAGCAATGTGTTTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7926#0 GTGGTGTGTGCGCGATTGGAAGTTTTGGTTGATTAAGCCCAATGTAAAACATTAGCAATG 60 consensus_7926#1 ------------------------------------------------------------ consensus_7926#0 ATGGAAGTGCAGCTAAAATCCGTTGCTTAATTCTATCGCATATTGTTGATGTAGTTGTGA 120 consensus_7926#1 ------------------------------------------------------------ consensus_7926#0 TTCTTGTTGTTAAAGGAAACCCGATTTTAAAGCACTCTCTATTTATCCAATAACATGAGA 180 consensus_7926#1 ------------------------------------------------------------ consensus_7926#0 CTAAAGCATTTAGCATTCCAACTGATGGCAAGCGTTAAACCATGCGTTGTTGTTAATAAG 240 consensus_7926#1 ------------------------------------------------------------ consensus_7926#0 TTCACTTCAAAAGGAACATTGTATCGAAAAAAAAGGATTATTAGCATAACAAGAAACAGG 300 consensus_7926#1 ------------------------------------------------------------ consensus_7926#0 GCGACCACTTTCTTTCAGCAGGTCAAACGTACACTTATATTATCTTAAACAAATGCTTAG 360 consensus_7926#1 ------------------------------------------------------------ consensus_7926#0 AAACGTTACTTGCTTACAGAGATGTATTTTAGTAAAGAAAAAACCCAAGAATGCGTTTTA 420 consensus_7926#1 ------------------------------------------------------------ consensus_7926#0 AACGTTATGGTTATGTTATGTGCTTTTGTTCAGGGCTTATTTACACCAGATTCAAGCTAG 480 consensus_7926#1 ------------------------------------------------------------ consensus_7926#0 TCATTATTATTGTAGCAAATATTTAAAAGACATGTTGATTGAAAATCCACTTTTATGAGT 540 consensus_7926#1 ------------------------------------------------------------ consensus_7926#0 TGCGCTACTGCTAAATAGCGCAACAAAAAAAAAAGACAAAACTATCAAAGTATATAAGTA 600 consensus_7926#1 ------------------------------------------------------------ consensus_7926#0 ACGTATTAAAAAGGCTATCCTATTGAAGTAGCATCGGAAAATGCATAGTGCACCCCGCAA 660 consensus_7926#1 ------------------------------------------------------------ consensus_7926#0 ACACATTGGTGCATTGGTGTGTGTGTGTGTGTGTGTGTGCATTGGCAGTGCGTTTATAGT 720 consensus_7926#1 ------------------------------------------------------------ consensus_7926#0 TGTAGTAGAAGTAGCACACACCTCCATGGCATGGCATGAGCTCAGTATATACATACATAC 780 consensus_7926#1 ------------------------------------------------------------ consensus_7926#0 ATGTATACATATTCAATATGCCCGCACAGTATAATCTTGTCCATTCATCATTAGGCGCAT 840 consensus_7926#1 ------------------------------------------------------------ consensus_7926#0 GGAATCGAACGATTCAGGTAAAAAACGTATATAACAATATATATTATTAACTATTAGCAT 900 consensus_7926#1 ------------------------------------------------------------ consensus_7926#0 ATTGGAAAAAAACCGAAAGATTTCATCACAATCGTGTCGACCGATAATCGTTTGCATCGT 960 consensus_7926#1 ------------------------------------------------------------ consensus_7926#0 GAAGAATGCGTGAATTCCCGTTTAGAAAGGTTAGTGCAGAAGAATGTAACAGAGAGTGGC 1020 consensus_7926#1 ------------------------------------------------------------ consensus_7926#0 AGAAGAAGCCGATAAAGAAGCCGTGCACGTCAATTGGAAAAATTGCTTCGAGCACTGGCT 1080 consensus_7926#1 ------------------------------------------------------------ consensus_7926#0 AGCTACGATCGTTTGCGGCATGTCGTGTCCGGCAAGGTAGGAGCTTCACGGTGCATTGGA 1140 consensus_7926#1 --------------AGCCCACTTTGCGTGCGATAGTACAGTAA------GATAC------ 34 ** * * ** ** * ** * * * * consensus_7926#0 CACATTACTATCGCACGCCATACACATATCAACACCATTAGGAACGATTAACATACATAT 1200 consensus_7926#1 CACATTACTATCGCACGCCATACACATATCAACACCATTAGGAACGATTAACATACATAT 94 ************************************************************ consensus_7926#0 CGATTACATATCAGCTCTATAAAAGCATAGTAAAGGAAAGAAAAAAACGAAACAAATCCT 1260 consensus_7926#1 CGATTACATATCAGCTCTATAAAAGCATAGTAAAGGAAAGAAAAAAACGAAACAAATCCT 154 ************************************************************ consensus_7926#0 ACCACTTCAGCGGATCAGGCCCCGCCAAAGTGTCTCCTACACATGTCACATTTTTTAGCA 1320 consensus_7926#1 ACCACTTCAGCGGATCAGGCCCCGCCAAAGTGTCTCCTACACATGTCACATTTTTTAGCA 214 ************************************************************ consensus_7926#0 ACGATGCCACGCGCACCACGCATCCATCGCTCTTAACGCAAGCAGCTGTTTGCAGTTTTG 1380 consensus_7926#1 ACGATGCCACGCGCACCACGCATCCATCGCTCTTAACGCAAGCAGCTGTTTGCAGTTTTG 274 ************************************************************ consensus_7926#0 CGCGGTAGAGTAAACGCAGCAGCAAAATGCATGCATTTGGCTGTGGCGCGTGGTAATAGC 1440 consensus_7926#1 CGCGGTAGAGTAAACGCAGCAGCAAAATGCATGCATTTGGCTGTGGCGCGTGGTAATAGC 334 ************************************************************ consensus_7926#0 GTTTAGGGATTATTCACAGCCATTTAAGGTTGTGGTGTTAAGTATGGTGTTGTTGTTCAA 1500 consensus_7926#1 GTTTAGGGATTATTCACAGCCATTTAAGGTTGTGGTGTTAAGTATGGTGTTGTTGTTCAA 394 ************************************************************ consensus_7926#0 TGAGTACGAACTATTGCTAGCATTTAGTGGCGTGTGTATACATGTTTAGACGGGCGTTTT 1560 consensus_7926#1 TGAGTACGAACTATTGCTAGCATTTAGTGGCGTGTGTATACATGTTTAGACGGGCGTTTT 454 ************************************************************ consensus_7926#0 CTGTTATCTTAGCGAGGCTGCCGAGTGGTGGATGGCGCGTACCGAGTATTAAACTTGCTT 1620 consensus_7926#1 CTGTTATCTTAGCGAGGCTGCCGAGTGGTGGATGGCGCGTACCGAGTATTAAACTTGCTT 514 ************************************************************ consensus_7926#0 TTAGCTTTTAGCAATGTGTTTAAAACGGTGTTTAACTCTGCTGTCGCTGTAGACTACTGC 1680 consensus_7926#1 TTAGCTTTTAGCAATGTGTTTTA------------------------------------- 537 ********************* * consensus_7926#0 GGTTTTGTGCTTATCATGCGTAACATATGGTTTGAGTTTCAGCACACGATCGATTCGTGG 1740 consensus_7926#1 ------------------------------------------------------------ consensus_7926#0 CCAACTTCATGGAACAGGCTTAAGTAACCAGTAAAAACAAAAATCACATTTTACTCAGAA 1800 consensus_7926#1 ------------------------------------------------------------ consensus_7926#0 CGTGCTTATTGAAGGAATCGACTCGAAATACGAGTTGGGAGTGTTTAGTACAATTTA 1857 consensus_7926#1 --------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||