These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7929#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1298 fasta sequence [ACCGGTGGCATGGACCGAAACGGTGTTAAGCATCCGTGTTAAATTTACATTTTTACTTTACAAACGAGCATTTGTACATGGTTTCGCACTAACGACAGGCAACGGCAGACAGGATGACGATAGCGGAGTATATCGGTGCGCTTTCGGAGAATCCCTATTTCGGGGCCGGCTTCGGTTTGTTCGGGGTCGGTGCCGGAGCAGCAATGTTACGTAAAGGGATGCAGGGAGCAATGATTTTGTTCCGGCGGCACTACATGATTACGCTCGAGGTACCGTGCCGAGACAAATCGTACCAGTGGCTGCTGCAGTGGATCACACAGAAGGGAGCACGACAAACGCAGCATCTCAGCGTGGAGACGTCCTT-TGAGCAGCGCGACACGGGACACATTAAAACGCGGTACGACTTTATACCCTCCGTCGGTACGCACATCATGCGGTACGGCGGCACCTGGATAAAGGTGGACCGTGCCCGGGAGCAGCACACGCTCGACCTGCACATGGGCGTGCCCTGGGAAACGGTACAGCTGACCGCATTCGGTAGGGATAAGAATTTGTACTTTAAAATTCTGGAGGAGGCCCGGCAGCTGGCGCTGAAAAACACGGAAGGAAAGACGATCATGTACACGGCGATGGGCTCGGAATGGCGACCCTTCGGACATCCGCGCAAGCGACGGTCCCATCGGTTCGGTGGTGCTTGACGAAGGTGTTTCCGAGCGCATATTGCGCGACTGCCGGGAGTTTATCAAAAACCCGCAATGGTACTCGGACCGCGGAATACCTTACCGGCGAGGATATCTGCTGCACGGGCCGCCCGGTTGCGGCAAATCCAGCTTCATCACTGCACTGGCCCGGCGAAATCGAGTTCGGCATCTGTCTGCTAAACCTGTCCGAACGTGGCCTGACCGACGATCGATTAAATCACCTGATGAACGTGGCACCCCAGCAGTCGATCATACTGCTTGAGGACATCGATGCGGCGTTCGTATCGCGTCAGGACACGCTGCAGCAGAAGGCCGCCTACGAAGGGCTGAACCGTGTCACCTTTAGCGGGCTGCTAAACTGCCTCGACGGTGTTGCATCCACCGAGGCACGCATCGTCTTCATGACGACAAACTACCTCGAGCGGCTCGATCCAGCACTCATACGGCCCGGCAGAGTCGATGTGAAGGAATACGTGGGTCACTGTTCACGCCACCAGCTCGAGCAAATGTTCCGCCGCTTCTACACCGGCACGGACGCGGAGGCAAATGCTCGCATCTTTGCGGAGCTCGTAGCGGCCGACGGGCGCAACGTAAGCC] [+] EMBL BM645775 [ CCGGTGGCATGGACCGAAACGGTGTTAAGCATCCGTGTTAAATTTACATTTTTACTTTACAAACGAGCATTTGTACATGGTTTCGCACTAACGACGGGCAACGGCAGACAGGATGACGATAGCGGAGTATATCGGTGCGCTTTCGGAGAATCCCTATTTCGGGGCCGGCTTCGGTTTGTTCGGGGTCGGTGCCGGAGCAGCAATGTTACGTAAAGGGATGCAGGGAGCAATGATTTTGTTCCGGCGGCACTACATGATTACGCTCGAGGTACCGTGCCGAGACAAATCGTACCAGTGGCTGCTTCAGTGGATCACACAGAAGGGAGCACGACAAACGCAGCATCTCAGCGTGGAGACGTCCTT TGAGCAGCGCGACACGGGACACATTAAAACGCGGTACGACTTTATACCCTCCGTCGGTACGCACATCATGCGGTACGGCGGCACCTGGATAAAGGTGGACCGTGCCCGGGAGCAGCACACGCTCGACCTGCACATGGGCGTGCCCTGGGAAACGGTACAGCTGACCGCATTCGGTAGGGATAAGAATTGGTACTTTAAAATTCTGGAGGAGGCCCGGCAGCTGGCGCTGAAAAACACGGAAGGAAAGACGATCATGTACACGGCGATGGGCTCGGAATGGCGACCCTTCGGACATCCGCGCAAGCGAC GTCCCATCGGTTCGGTGGTGCTTGAC ] [+] EMBL CNS08KLI [ GTGGCATGGACCGAAACGGTGTTAAGCATCCGTGTTAAATTTACATTTTTACTTTACAAACGAGCATTTGTACATGGTTTCGCACTAACGACAGGCAACGGCAGACAGGATGACGATAGCGGAGTATATCGGTGCGCTTTCGGAGAATCCCTATTTCGGGGCCGGCTTCGGTTTGTTCGGGGTCGGTGCCGGAGCAGCAATGTTACGTAAAGGGATGCAGGGAGCAATGATTTTGTTCCGGCGGCACTACATGATTACGCTCGAGGTACCGTGCCGAGACAAATCGTACCAGTGGCTGCTGCAGTGGATCACACAGAAGGGAGCACGACAAACGCAGCATCTCAGCGTGGAGACGTCCTTATGAACAGCGCGACACGGGACACATTAAAACGCGGTACGACTTTATACCCTCCGTCGGTACGCACATCATGCGGTACGGCGGCACCTGGATAAAGGTAGACCGTGCCCGGGAACAGCACACGCTCGACCTGTTTATGGGCGTGCCCTGGGAAACGGTACAGCTGACCGCATTCGGTAGGGATAAGAATTTGTACTTTAAAATTCTGGAGGAGGCCCGGCAGCTGGCGCTGAAAAACACGGAAGGAAAGACGATCATGTACACGGCGATGGGCTCGGAATGGCGACCCTTCGGACATCCGCGCAA GACGGTCCCATCGGTTCGGTGGTGCTTGACGAAGGTGTTTCCGAGCGCATATTGCGCGACTGCCGGGAGTTTATCAAAAATCCGCAATGGTACTCGGACCGTGGAATACCTTACCGGCGAGGGTATCTGCTGCACGGGCCGCCCGGTTGCGGCAAATCCAGCTTCATCACTGCACTGGCCCGGCGAAATCGAGTTCGGCATCTGTCTGCTAAACCTGTCCGAACGTGGCCTGACCGACGATCGATTAAATCACCT ] [+] EMBL CNS08ZBB [aagtGTGGCATGGACCGAAACGGTGTTAAGCATCCGTGTTAAATTTACATTTTTACTTTACAAACGAGCATTTGTACATGGTTTCGCACTAACGACAGGCAACGGCAGACAGGATGACGATAGCGGAGTATATCGGTGCGCTTTCGGAGAATCCCTATTTCGGGGCCGGCTTCGGTTTGTTCGGGGTCGGTGCCGGAGCAGCAATGTTACGTAAAGGGATGCAGGGAGCAATGATTTTGTTCCGGCGGCACTACATGATTACGCTCGAGGTACCGTGCCGAGACAAATCGTACCAGTGGCTGCTGCAGTGGATCACACAGAAGGGAGCACGACAAACGCAGCATCTCAGCGTGGAGACGTCCTT TGAACAGCGCGACACGGGACACATTAAAACGCGGTACGACTTTATACCCTCCGTCGGTACGCACATCATGCGGTACGGCGGCACCTGGATAAAGGTAGACCGTGC ] [+] EMBL BM599570 [ ccgATTTGTACATGGTTTCGCACTAACGACGGGCAACGGCAGACAGGATGACGATAGCGGAGTATATCGGTGCGCTTTCGGAGAATCCCTATTTCGGGGCCGGCTTCGGTTTGTTCGGGGTCGGTGCCGGAGCAGCAATGTTACGTAAAGGGATGCAGGGAGCAATGATTTTGTTCCGGCGGCACTACATGATTACGCTCGAGGTACCGTGCCGAGACAAATCGTACCAGTGGCTGCTGCAGTGGATCACACAGAAGGGAGCACGACAAACGCAGCATCTCAGCGTGGAGACGTCCTT TGAGCAGCGCGACACGGGACACATTAAAACGCGGTACGACTTTATACCCTCCGTCGGTACGCACATCATGCGGTACGGCGGCACCTGGATAAAGGTGGACCGTGCCCGGGAGCAGCACACGCTCGACCTGCACATGGGCGTGCCCTGGGAAACGGTACAGCTGACCGCATTCGGTAGGGATAAGAATTTGTACTTTAAAATTCTGGAGGAGGCCCGGCAGCTGGCGCTGAAAAACACGGAAGGAAAAACGATCATGTACACGGCGATGGGCTCGGAATGGCGACCCTTCGGACATCCGCGCAAGCGAC GTCCCATCGGTTCGGTGGTGCTTGACGAAGGTGTTTCCGAGCGCATATTGCGC ] [+] EMBL BX624432 [ CACTAACGACAGGCAACGGCAGACAGGATGACGATAGCGGAGTATATCGGTGCGCTTTCGGAGAATCCCTATTTCGGGGCCGGCTTCGGTTTGTTCGGGGTCGGTGCCGGAGCAGCAATGTTACGTAAAGGGATGCAGGGAGCAATGATTTTGTTCCGGCGGCACTACATGATTACGCTCGAGGTACCGTGCCGAGACAAATCGTACCAGTGGCTGCTGCAGTGGATCACACAGAAGGGAGCCCGACAAACGCAGCATCTCAGCGTGGAGACGTCCTT TGAGCAGCGCGACACGGGACACATTAAAACGCGGTACGACTTTATACCCTCCGTCGGTACGCACATCATGCGGTACGGCGGCACCTGGATAAAGGTGGACCGTGCCCGGGAGCAGCACACGCTCGACCTGCACATGGGCGTGCCCTGGGAAACGGTACAGCTGACCGCATTCGGTAGGGATAAGAATTTGTACTTTAAAATTCTGGAGGAGGCCCGGCAGCTGGCGCTGAAAAACACGGAAGGAAAGACGATCATGTACACGGCGATGGGCTCGGAATGGCGACCCTTCGGACATCCGCGCAAGCGACGG CCCATCGGTTCGGTGGTGCTTGACGAANGTGTTTCCGAGCGCATATTGCGCGACTGCCGGGAGTTTATCAAAAACCCGCAATGGTACTCGGACCGCGGAATACCTTACCGGCGAGGATATCTG ] [+] EMBL BM656499 [ ccgGGAAAGACGATCATGTACACGGCGATGGGCTCGGAATGGCGACCCTTCGGACATCCGCGCAAGCGACGG CCCATCGGTTCGGTGGTGCTTGACGAAGGTGTTTCCGAGCGCATATTGCGCGACTGCCGGGAGTTTATCAAAAACCCGCAATGGTACTCGGACCGCGGAATACCTTACCGGCGAGGATATCTGCTGCACGGGCCGCCCGGTTGCGGCAAATCCAGCTTCATCACTGCACTGG CCGGCGAAATCGAGTTCGGCATCTGTCTGCTAAACCTGTCCGAACGAGGCCTGACCGACGATCGATTAAATCACTTGATGAACGTGGCACCCCAGCAGTCGATCATACTGCTTGAGGACATCGATGCGGCGTTCGTATCGCGTCAGGACACGCTGCAGCAGAAGGCCGCCTACGAAGGGCTGAACCGTGTCACCTTTAGCGGGCTGCTAAACTGCCTCGACGGTGTTGCATCCACCGAGGCACGCATCGTCTTCATGACGACAAACTACCTCGAGCGGCTCGATCCAGCACTCATACGGCCCGGCAGAGTCGATGTGAAGGAATACGTGGGTCACTGTTCACGCCACCAGCTCGAGCAAATGTTCCGCCGCTTCTACACCGGCACGGACGCGGAGGCAAATGCTCGCATCTTTGCGGAGCTCGTAGCGGCCGACGGGCGCAACGTAAGCC] consensusID : consensus_7929#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence [AGGCAAGAATCGGCACGTNGAGTTAATTTACATTTTTACTCCACAAACGTAGCATTTGTACATGGTTTCGCACTAACGACGGGCAACGGCAGACAGGATGACGATAGCGGAGTATATCGGTGCGCTTTCGGAGAATCCCTATTTCGGGGCCGGCTTCGGTTTGTTCGGGGTCGGTGCCGGAGCAGCAATGTTACGTAAAGGGATGCAGGGAGCAATGATTTTGTTCCGGCGGCACTACATGATTACGCTCGAGGTACCGTGCCGAGACAAATCGTACCAGTGGCTGCTTCAGTGGATCACACAGAAGGGAGCACGACAAACGCAGCATCTCAGCGTGGAGACGTCCTTTGAGCAGCGCGACACGGGACACATTAAAACGCGGTACGACTTTATACCCTCCGTCGGTACGCACATCATGCGGTACGGCGGCACCTGGATAAAGGTGGACCGTGCCCGGGAGCAGCACACGCTCGACCTGCACATGGGCAGTGCCCTGGGAAAACGGTACAGCTGACCGCATTCGGTAGGGACTAAGAATTTGTACTTTAAAATTCTGGAAGGAGGCCCGGCAGCTGGCGCTGAAAAACCACGGACAGGCNAAGACGANTCATGTACACCGGGCGATGGGCTCGGN] [+] EMBL BX467170 [AGGCAAGAATCGGCACGTNGAGTTAATTTACATTTTTACTCCACAAACGTAGCATTTGTACATGGTTTCGCACTAACGACGGGCAACGGCAGACAGGATGACGATAGCGGAGTATATCGGTGCGCTTTCGGAGAATCCCTATTTCGGGGCCGGCTTCGGTTTGTTCGGGGTCGGTGCCGGAGCAGCAATGTTACGTAAAGGGATGCAGGGAGCAATGATTTTGTTCCGGCGGCACTACATGATTACGCTCGAGGTACCGTGCCGAGACAAATCGTACCAGTGGCTGCTTCAGTGGATCACACAGAAGGGAGCACGACAAACGCAGCATCTCAGCGTGGAGACGTCCTTTGAGCAGCGCGACACGGGACACATTAAAACGCGGTACGACTTTATACCCTCCGTCGGTACGCACATCATGCGGTACGGCGGCACCTGGATAAAGGTGGACCGTGCCCGGGAGCAGCACACGCTCGACCTGCACATGGGCAGTGCCCTGGGAAAACGGTACAGCTGACCGCATTCGGTAGGGACTAAGAATTTGTACTTTAAAATTCTGGAAGGAGGCCCGGCAGCTGGCGCTGAAAAACCACGGACAGGCNAAGACGANTCATGTACACCGGGCGATGGGCTCGGN] consensusID : consensus_7929#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 223 fasta sequence [GCGGCTCGTTCCTGCACTCTTTCGGCCCGGCAGAGTCGATGTGAAGGAATACGTGGGTCACTAAAAAAAAAACCAGCTCGAGCAAATGTTCCGCCGCTTCTACACCGGCACGGACGCGGAGGCAAATGCTCGCATCTTTGCGGAGCGTGTAGCGGCCGACGGGCGCAACGTAAGCCCGGCACAGGTCCAGGGCTACTTCATGGTGCACAAAATGTCCGATCAG] [-] EMBL CNS08KLJ [GCGGCTCGTTCCTGCACTCTTTCGGCCCGGCAGAGTCGATGTGAAGGAATACGTGGGTCACTAAAAAAAAAACCAGCTCGAGCAAATGTTCCGCCGCTTCTACACCGGCACGGACGCGGAGGCAAATGCTCGCATCTTTGCGGAGCGTGTAGCGGCCGACGGGCGCAACGTAAGCCCGGCACAGGTCCAGGGCTACTTCATGGTGCACAAAATGTCCGATCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7929#0 ACCGGTGGCATGGACCGAAACGGTGTTAAGCATCCGTGTTAAATTTACATTTTTACTTTA 60 consensus_7929#1 -----------------AGGCAAGAATCGGCACGTNGAGTTAATTTACATTTTTACTCCA 43 consensus_7929#2 ------------------------------------------------------------ consensus_7929#0 CAAACG-AGCATTTGTACATGGTTTCGCACTAACGACAGGCAACGGCAGACAGGATGACG 119 consensus_7929#1 CAAACGTAGCATTTGTACATGGTTTCGCACTAACGACGGGCAACGGCAGACAGGATGACG 103 consensus_7929#2 ------------------------------------------------------------ consensus_7929#0 ATAGCGGAGTATATCGGTGCGCTTTCGGAGAATCCCTATTTCGGGGCCGGCTTCGGTTTG 179 consensus_7929#1 ATAGCGGAGTATATCGGTGCGCTTTCGGAGAATCCCTATTTCGGGGCCGGCTTCGGTTTG 163 consensus_7929#2 ----------------------------------------------------GCGGCTCG 8 *** * * consensus_7929#0 TTCGGGGTCGGTGCCGGAGCAGCAATGTT-ACGTAAAGGGATGCAGGGAGCAATGATTTT 238 consensus_7929#1 TTCGGGGTCGGTGCCGGAGCAGCAATGTT-ACGTAAAGGGATGCAGGGAGCAATGATTTT 222 consensus_7929#2 TTCCTGCACTCTTTCGGCCCGGCAGAGTCGATGTGAAGGAATACGTGGGTCACTAAAAAA 68 *** * * * *** * *** ** * ** **** ** * ** ** * * consensus_7929#0 GTT-CCGGCGGCACTACATGATTACGCTCGAGGTACCGTGCCGAGACAAATCGTACCAGT 297 consensus_7929#1 GTT-CCGGCGGCACTACATGATTACGCTCGAGGTACCGTGCCGAGACAAATCGTACCAGT 281 consensus_7929#2 AAAACCAGCTCGAGCAAATG-TTCCGCC---GCTTCTACACCGGCACGGA-CGCGGAGGC 123 ** ** * * *** ** *** * * * *** ** * ** * consensus_7929#0 GGCTGCTGCAGTGGATCACACAGAAGGGAGCA--CGACAAACGCAGCATCTCAGCGTGG- 354 consensus_7929#1 GGCTGCTTCAGTGGATCACACAGAAGGGAGCA--CGACAAACGCAGCATCTCAGCGTGG- 338 consensus_7929#2 AAATGCTCGCATCT-TTGCGGAGCGTGTAGCGGCCGACGGGCGCAACGT--AAGCCCGGC 180 **** * * * ** * *** **** **** * * *** ** consensus_7929#0 AGACGTCCTTTGAGCAGCGCGACACGGGACACATTAAAACGCGGTACGACTTTATACCCT 414 consensus_7929#1 AGACGTCCTTTGAGCAGCGCGACACGGGACACATTAAAACGCGGTACGACTTTATACCCT 398 consensus_7929#2 ACAGGTCC----AGGGCTACTTCATGGTGCACAA-AATGTCCGATCAG------------ 223 * * **** ** * ** ** **** ** ** * * consensus_7929#0 CCGTCGGTACGCACATCATGCGGTACGGCGGCACCTGGATAAAGGTGGACCGTGCCCGGG 474 consensus_7929#1 CCGTCGGTACGCACATCATGCGGTACGGCGGCACCTGGATAAAGGTGGACCGTGCCCGGG 458 consensus_7929#2 ------------------------------------------------------------ consensus_7929#0 AGCAGCACACGCTCGACCTGCACATGGGC-GTGCCCTGGGAAA-CGGTACAGCTGACCGC 532 consensus_7929#1 AGCAGCACACGCTCGACCTGCACATGGGCAGTGCCCTGGGAAAACGGTACAGCTGACCGC 518 consensus_7929#2 ------------------------------------------------------------ consensus_7929#0 ATTCGGTAGGGA-TAAGAATTTGTACTTTAAAATTCTGGA-GGAGGCCCGGCAGCTGGCG 590 consensus_7929#1 ATTCGGTAGGGACTAAGAATTTGTACTTTAAAATTCTGGAAGGAGGCCCGGCAGCTGGCG 578 consensus_7929#2 ------------------------------------------------------------ consensus_7929#0 CTGAAAAAC-ACGGAAGG--AAAGACGAT-CATGTACAC--GGCGATGGGCTCGGAATGG 644 consensus_7929#1 CTGAAAAACCACGGACAGGCNAAGACGANTCATGTACACCGGGCGATGGGCTCGGN---- 634 consensus_7929#2 ------------------------------------------------------------ consensus_7929#0 CGACCCTTCGGACATCCGCGCAAGCGACGGTCCCATCGGTTCGGTGGTGCTTGACGAAGG 704 consensus_7929#1 ------------------------------------------------------------ consensus_7929#2 ------------------------------------------------------------ consensus_7929#0 TGTTTCCGAGCGCATATTGCGCGACTGCCGGGAGTTTATCAAAAACCCGCAATGGTACTC 764 consensus_7929#1 ------------------------------------------------------------ consensus_7929#2 ------------------------------------------------------------ consensus_7929#0 GGACCGCGGAATACCTTACCGGCGAGGATATCTGCTGCACGGGCCGCCCGGTTGCGGCAA 824 consensus_7929#1 ------------------------------------------------------------ consensus_7929#2 ------------------------------------------------------------ consensus_7929#0 ATCCAGCTTCATCACTGCACTGGCCCGGCGAAATCGAGTTCGGCATCTGTCTGCTAAACC 884 consensus_7929#1 ------------------------------------------------------------ consensus_7929#2 ------------------------------------------------------------ consensus_7929#0 TGTCCGAACGTGGCCTGACCGACGATCGATTAAATCACCTGATGAACGTGGCACCCCAGC 944 consensus_7929#1 ------------------------------------------------------------ consensus_7929#2 ------------------------------------------------------------ consensus_7929#0 AGTCGATCATACTGCTTGAGGACATCGATGCGGCGTTCGTATCGCGTCAGGACACGCTGC 1004 consensus_7929#1 ------------------------------------------------------------ consensus_7929#2 ------------------------------------------------------------ consensus_7929#0 AGCAGAAGGCCGCCTACGAAGGGCTGAACCGTGTCACCTTTAGCGGGCTGCTAAACTGCC 1064 consensus_7929#1 ------------------------------------------------------------ consensus_7929#2 ------------------------------------------------------------ consensus_7929#0 TCGACGGTGTTGCATCCACCGAGGCACGCATCGTCTTCATGACGACAAACTACCTCGAGC 1124 consensus_7929#1 ------------------------------------------------------------ consensus_7929#2 ------------------------------------------------------------ consensus_7929#0 GGCTCGATCCAGCACTCATACGGCCCGGCAGAGTCGATGTGAAGGAATACGTGGGTCACT 1184 consensus_7929#1 ------------------------------------------------------------ consensus_7929#2 ------------------------------------------------------------ consensus_7929#0 GTTCACGCCACCAGCTCGAGCAAATGTTCCGCCGCTTCTACACCGGCACGGACGCGGAGG 1244 consensus_7929#1 ------------------------------------------------------------ consensus_7929#2 ------------------------------------------------------------ consensus_7929#0 CAAATGCTCGCATCTTTGCGGAGCTCGTAGCGGCCGACGGGCGCAACGTAAGCC 1298 consensus_7929#1 ------------------------------------------------------ consensus_7929#2 ------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||