These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7943#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 600 fasta sequence [AAAACACAAAAAAGATGCGGAATTCCTCGAGAACTGTTGGCCCACTGGATCAGTGTTCGATTGAACGATCTTCGCAAGCAACGGTTTTCCAGTTACCCTCTAAAGCT-----ACAACTCAAACAGTGAATTCAACATGAAACTCACGCTCGTTTTCCTGCTGTTCGCGCTGGTGTGTGCCGCGTACGCCCAAACCGATGCCGCCAAGGACGCGGCAAAGGATGCTACGGACAAGGTGAAGGATAAGGCTGCCCTGCCGGATGCGCCCAAGCTGGACAAGGATGCAGTGACGACGCCCGATCCAAAGGACGCCGCCAAGAAGGTGGAAGATGCGGCCGGCAAGGCGAAAGATCAGGCCGCCGAAGTGGGCAAGAAGCTGACCGACGCATTCAAGCTGTAAAGAACGACGTGCGGCAAAGATAGCTGCAACGATAACGTGGGAGTTTTATCGCTTCCCGCGCGCAATGCGAAACACACTCACATTTGACACAGTCCAATAAAAGTGGTGCTTGAGGGCAAAGAAGAAAACAAAAACCAACTTCATGCCACAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGGGCTGC] [-] EMBL CNS08KYZ [AAAACACAAAAAAGATGCGGAATTCCTCGAGAACTGTTGGCCCACTGGATCAGTGTTCGATTGAACGATCTTCGCAAGCAACGGTTTTCTAGTTACCCTCCAAAGCT ACAAGTCAAACAGTGAATTCAACATGAAACTAACGCTCGTTTTCCTGCTGTTCGCGCTGGTTTGTGCCGCGTACGCCCAAACCGATGCCGCCAAGGACGCGGCAAAGGATGCTACGGACAAGGTGAAGGATAAGGCTGCCCTGCCGGATGCGCCCAAGCTGGACAAGGATGCAGTGACGACGCCCGATCCAAAGGACGCCGCCAAGAAGGTGGAAGATGTGGCCGGCAAGGCGAAAGATCAGGCCGCCGAAGTGGGCAAGAAGCTGACCGACGCATTCAAGCTGTAAAGAACGACGTGCGGCAAAGATAGCTGCAACGATAACGTGGGAGTTTTATCGCTTCCCGCGCGCAACGCGAAACAAACTCACATTTGACACAGTCCAATAAAAGTGGTGCTTGAGGGCAAAGAAGAAAACAAAAACCAACTTCATG ] [+] EMBL AY187044 [ CGATTGAACGATCTTCGCAAGCAACGGTTTTCCAGTTACCCTCTAAAGCT ACAACTCAAACAGTGAATTCAACATGAAACTCACGCTCGTTTTCCTGCTGTTCGCGCTGGTGTGTGCCGCGTACGCCCAAACCGATGCCGCCAAGGACGCGGCAAAGGATGCTACGGACAAGGTGAAGGATAAGGCTGCCCTGCCGGATGCGCCCAAGCTGGACAAGGATGCAGTGACGACGCCCGATCCAAAGGACGCCGCCAAGAAGGTGGAAGATGCGGCCGGCAAGGCGAAAGATCAGGCCGCCGAAGTGGGCAAGAAGCTGACCGACGCATTCAAGCTGTAAAGAACGACGTGCGGCAAAGATAGCTGCAACGATAACGTGGGAGTTTTATCGCTTCCCGCGCGCAATGCGAAACACACTCACATTTGACACAGTCCAATAAAAGTGGTGCTTGAGGGCAAAGAAGAAAACAAAAACCAACTTCATGCCACAGTAAAA ] [+] EMBL CNS08YP8 [ GATTGAACGATCTTCGCAAGCAACGGTTTTCCAGTTACCCTCTAAAGCT ACAACTCAAACAGTGAATTCAACATGAAACTCACGCTCGTTTTCCTGCTGTTCGCGCTGGTGTGTGCCGCGTACGCCCAAACCGATGCCGCCAAGGACGCGGCAAAGGATGCTACGGACAAGGTGAAGGATAAGGCTGCCCTGCCGGATGCGCCCAAGCTGGACAAGGATGCAGTGACGACGCCCGATCCAAAGGACGCCGCCAAGAAGGTGGAAGATGCGGCCGGCAAGGCGAAAGATCAGGCCGCCGAAGTGGGCAAGAAGCTGACCGACGCATTCAAGCTGTAAAGAACGACGTGCGGCAAAGATAGCTGCAACGATAACGTGGGAGTTTTATCGCTTCCCGCGCGCAATGCGAAACACACTCACATTTGACACAGTCCAATAAAAGTGGTGCTTGAGGGCAAAGAAGAAAACAAAAACCAACTTCATGCCACAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGGGCTGC] [+] EMBL BM648569 [ ccgGAACGATCTTTGCAAGCAACGGTTTTTCAGTTACCTTCTAAAGCTAAAACACAACTCAAACAGTGAATTCAACATGAAACTCACGCTCGTTTTCCTGCTGTTCGCGCTGGTGTGTGCCGCGTACGCCCAAACCGATGCCGCCAAGGACGCGGCAAAGGATGCTACGGACAAGGTGAAGGATAAGGCTGCCCTGCCGGATGCGCCCAAGCTGGACAAGGATGCAGTGACGACGCCCGATCCAAAGGACGCCGCCAAGAAGGTGGAAGATGCGGCTGGCAAGGCGAAAGATCAGGCCGCCGAAGTGGGCAAGAAGCTGACCGACGCATTCAAGCTGTAAAGAACGACGTGCGGCAAAGATAGCTGCAACGATAACGTGGGAGTTTTATCGCTTCCCGCGCGCAATGCGAAACACACTCACATTTGACACAGTCCAATAAAAGTGGTGCTTGAGGGCAAAGAAGAAAACAAAAACCAACTTCATGCCACAGTAAcgt ] [+] EMBL BM628192 [ ccgACGATCTTTGCAAGCAACGGTTTTCCAGTTACCTTCTAAAGCTAAAACACAACTCAAACAGTGAATTCAACATGAAACTCACGCTCGTTTTCCTGCTGTTCGCGCTGGTGTGTGCCGCGTACGCCCAAACCGATGCCGCCAAGGACGCGGCAAAGGATGCTACGGACAAGGTGAAGGATAAGGCTGCCCTGCCGGATGCGCCCAAGCTGGACAAGGATGCAGTGACGACGCCCGATCCAAAGGACGCCGCCAAGAAGGTGGAAGATGTGGCCGGCAAGGCGAAAGATCAGGCCGCCGAAGTGGGCAAGAAGCTGACCGACGCATTCAAGCTGTAAAGAACGACGTGCGGCAAAGATAGCTGCAACGATAACGTGGGAGTTTTATCGCTTCCCGCGCGCAACGCGAAACACACTCACATTTGACACAGTCCA ] [+] EMBL CNS08DXY [ CGCAAGCAACGGTTTTCCAGTTACCCTCTAAAGCT ACAACTCAAACAGTGAATTCAACATGAAACTCACGCTCGTTTTCCTGCTGTTCGCGCTGGTGTGTGCCGCGTACGCCCAAACCGATGCCGCCAAGGACGCGGCAAAGGATGCTACGGACAAGGTGAAGGATAAGGCTGCCCTGCCGGATGCGCCCAAGCTGGACAAGGATGCAGTGACGACGCCCGATCCAAAGGACGCCGCCAAGAAGGTGGAAGATGCGGCCGGCAAGGCGAAAGATCAGGCCGCCGAAGTGGGCAAGAAGCTGACCGACGCATTCAAGCTGTAAAGAACGACGTGCGGCAAAGATAGCTGCAACGATAACGTGGGAGTTTTATCGCTTCCCGCGCGCAATGCGAAACACACTCACATTTGACACAGTCCAATAAAAGTGGTGCTTGAGGGCAAAGAAGAAAACAAAAACCAACTTCATGCCACAGT AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCCCATGTGCCCGGGC ] consensusID : consensus_7943#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 523 fasta sequence [TTCGATTGAACGATCTTCGCAAGCAACGGTTTTCTAGTTACCCTCCAAAGCTACAAGTCAAACAGTGAATTCAACATGAAACTCACGCTCGTTTTCCTGCTGTTCGCGCTGGTGTGTGCCGCGTACGCCCAAACCGATGCCGCCAAGGACGCGGCAAAGGATGCTACGGACAAGGTGAAGGATAAGGCTGCCCTGCCGGATGCGCCCAAGCTGGACAAGGATGCAGTGACGACGCCCGATCCAAAGGACGCCGCCAAGAAGGTGGAAGATGTGGCCGGCAAGGCGAAAGATCAGGCCGCCGAAGTGGGCAAGAAGCTGACCGACGCATTCAAGCTGTAAAGAACGACGTGCGGCAAAGATAGCTGCAACGATAACGTGGGAGTTTTATCGCTTCCCGCGCGCAACGCGAAACACACTCACATTTGACACAGTCCAATAAAAGTGGTGCTTGAGGGCAAAGAAGAAAACAAAAACCAACTTCATGCCACAGTAAGAAAAAAAAAAAAAAAAAAGGCACATGTGC] [+] EMBL CNS08KYY [TTCGATTGAACGATCTTCGCAAGCAACGGTTTTCTAGTTACCCTCCAAAGCTACAAGTCAAACAGTGAATTCAACATGAAACTCACGCTCGTTTTCCTGCTGTTCGCGCTGGTGTGTGCCGCGTACGCCCAAACCGATGCCGCCAAGGACGCGGCAAAGGATGCTACGGACAAGGTGAAGGATAAGGCTGCCCTGCCGGATGCGCCCAAGCTGGACAAGGATGCAGTGACGACGCCCGATCCAAAGGACGCCGCCAAGAAGGTGGAAGATGTGGCCGGCAAGGCGAAAGATCAGGCCGCCGAAGTGGGCAAGAAGCTGACCGACGCATTCAAGCTGTAAAGAACGACGTGCGGCAAAGATAGCTGCAACGATAACGTGGGAGTTTTATCGCTTCCCGCGCGCAACGCGAAACACACTCACATTTGACACAGTCCAATAAAAGTGGTGCTTGAGGGCAAAGAAGAAAACAAAAACCAACTTCATGCCACAGTAAGAAAAAAAAAAAAAAAAAAGGCACATGTGC] [+] EMBL BM602796 [ ccgGAACGATCTTCGCAAGCAACGGTTTTCTAGTTACCCTCCAAAGCTACAAGTCAAACAGTGAATTCAACATGAAACTCACGCTCGTTTTCCTGCTGTTCGCGCTGGTGTGTGCCGCGTACGCCCAAACCGATGCCGCCAAGGACGCGGCAAAGGATGCTACGGACAAGGTGAAGGATAAGGCTGCCCTGCCGGATGCGCCCAAGCTGGACAAGGATGCAGTGACGACGCCCGATCCAAAGGACGCCGCCAAGAAGGTGGAAGATGTGGCCGGCAAGGCGAAAGATCAGGCCGCCGAAGTGGGCAAGAAGCTGACCGACGCATTCAAGCTGTAAAGAACGACGTGCGGCAAAGATAGCTGCAACGATAACGTGGGAGTTTTATCGCTTCCCGCGCGCAACGCGAAACACACTCACATTTGACACAGTCCAATAAAAGTGGTGCTTGAGGGCAAAGAAGAAAACAAAAACCAACTTCATGCCACAGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7943#0 AAAACACAAAAAAGATGCGGAATTCCTCGAGAACTGTTGGCCCACTGGATCAGTGTTCGA 60 consensus_7943#1 -------------------------------------------------------TTCGA 5 ***** consensus_7943#0 TTGAACGATCTTCGCAAGCAACGGTTTTCCAGTTACCCTCTAAAGCTACAACTCAAACAG 120 consensus_7943#1 TTGAACGATCTTCGCAAGCAACGGTTTTCTAGTTACCCTCCAAAGCTACAAGTCAAACAG 65 ***************************** ********** ********** ******** consensus_7943#0 TGAATTCAACATGAAACTCACGCTCGTTTTCCTGCTGTTCGCGCTGGTGTGTGCCGCGTA 180 consensus_7943#1 TGAATTCAACATGAAACTCACGCTCGTTTTCCTGCTGTTCGCGCTGGTGTGTGCCGCGTA 125 ************************************************************ consensus_7943#0 CGCCCAAACCGATGCCGCCAAGGACGCGGCAAAGGATGCTACGGACAAGGTGAAGGATAA 240 consensus_7943#1 CGCCCAAACCGATGCCGCCAAGGACGCGGCAAAGGATGCTACGGACAAGGTGAAGGATAA 185 ************************************************************ consensus_7943#0 GGCTGCCCTGCCGGATGCGCCCAAGCTGGACAAGGATGCAGTGACGACGCCCGATCCAAA 300 consensus_7943#1 GGCTGCCCTGCCGGATGCGCCCAAGCTGGACAAGGATGCAGTGACGACGCCCGATCCAAA 245 ************************************************************ consensus_7943#0 GGACGCCGCCAAGAAGGTGGAAGATGCGGCCGGCAAGGCGAAAGATCAGGCCGCCGAAGT 360 consensus_7943#1 GGACGCCGCCAAGAAGGTGGAAGATGTGGCCGGCAAGGCGAAAGATCAGGCCGCCGAAGT 305 ************************** ********************************* consensus_7943#0 GGGCAAGAAGCTGACCGACGCATTCAAGCTGTAAAGAACGACGTGCGGCAAAGATAGCTG 420 consensus_7943#1 GGGCAAGAAGCTGACCGACGCATTCAAGCTGTAAAGAACGACGTGCGGCAAAGATAGCTG 365 ************************************************************ consensus_7943#0 CAACGATAACGTGGGAGTTTTATCGCTTCCCGCGCGCAATGCGAAACACACTCACATTTG 480 consensus_7943#1 CAACGATAACGTGGGAGTTTTATCGCTTCCCGCGCGCAACGCGAAACACACTCACATTTG 425 *************************************** ******************** consensus_7943#0 ACACAGTCCAATAAAAGTGGTGCTTGAGGGCAAAGAAGAAAACAAAAACCAACTTCATGC 540 consensus_7943#1 ACACAGTCCAATAAAAGTGGTGCTTGAGGGCAAAGAAGAAAACAAAAACCAACTTCATGC 485 ************************************************************ consensus_7943#0 CACAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGGGCTGC 600 consensus_7943#1 CACAGTAAGAAAAAAAAAAAAAAAAAAGGCACATGTGC---------------------- 523 ******** ****************** * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||