These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7955#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1164 fasta sequence [CCGCCCACGCGTCCGCCCACGCGCCCTGATAATGCTGGGAGTAACAATTCTATTGGTCGCGTTGCACGGCGCACATCAAGCTACGGCACAGTTGAATACATGTACCGGTGGCAAGATCTGCATCCCGATCGAGCAATGCCCACTGTTTGGGTCTAACTCAAGGGCCACGTGGACAGAGGCAACAATGAATCAGTTTAGAGCGCGTGTCTGTGAGAGGGAACCCACTATCGATGGGTGGACTAAGTACAAGGTATGTTGCGAACCACCGGCTCCCAGCGAACCAAGGGACGGTCGTAAGCCTGGCTTAGATTTGCTTGACCTCAAAGGCTGTGGGATGAACCGAATGCACAGCAACGAATCTGTAGAAAATAATGGTACTCTTGGGAAGCTTCCATGGATAGCATTACTAAAAACAAGTTCCGGGGAGTATCACTGTGCCGGAACCTTAATCAGTAAACGCTACGTGCTGACGACTGCGTTCTGCATAATAAGCAAGAACCTTGCATTTGTGCAGCTTCGAAAGAAGGATTGTGATGAGCGCGGCGCGTGTACACTGAAACCTCAAGACATTCCCATCGAACGCACCATCGGACACGATAGTTCCAAC-AAGCCATGGCTGTTTAACAACATCGGCCTGGTACGTTTGGCACGAGACGCATCGTTTAATAGTGATGTACGTCCAATCTGTCTCCCAATGGGACCCGAATATCAGACGACAGATACAAAATATTTCATTGTTACACGAAAAGAGGATTACGCTTTGTTGGACACAGACGCTGTAGCGATAAGCGAAGTTCATCTAGTTGCAAACGAGTATTGTCAAAGTTGGCTACAGAGGACGGTTCATAATTCTCAGATGTGTGCGATCGAATTGGCTCCAAACGATGATTGTGCAAAACCATACGGTGCATCACTAACAGCTCAGGCCCGCAATGGACGCCACGTCATGTACGGGGCACATGCTTTTGGGATGGACATTTGCACGCAAAATGAATCCACCGTGTACACCAGAGTGGAAAGTTTCGTTGATTGGATACTGAGTAATATCGAAGAGTGATCGTGTGATCGAACGTTCCTCTTGGAACTCTTTTTCAAAAACATACATTGTTTATGGATGATTTGATCGATTCTAAAAATGACNATAAATAGTAGCGAAAGNTTAGT] [+] EMBL BM576294 [CCGCCCACGCGTCCGCCCACGCGTCCGGATAATGCTGGGAGTAACAATTCTATTGGTCGCGTTGCACGGCGCACATCAAGCTACGGCACAGTTGAATACATGTACCGGTGGCAAGATCTGCATCCCGATCGAGCAATGCCCACTGTTTGGGTCTAACTCAAGGGCCACGTGGACAGAGGCAACAATGAATCAGTTTAGAGCGCGTGTCTGTGAGAGGGAACCCACTATCGATGGGTGGACT TACAAGGTATGTTGCGAACCACCGGCTCCCAGCGAACCAAGGGACGGTCGTAAGCCTGGCTTAGATTTGCTTGACCTCAAAGGCTGTGGGATGAACCGAATGCACAGCAACGAATCTGTAGAAAATAATGGTACTCTTGGGAAGCTTCCATGGATAGCATTACTAAAAACAAGTTCCGGGGAGTATCACTGTGCCGGAACCTTAATCAGTAAACGCTACGTGCTGACGACTGCGTTCTGCATAATAAGCAAGAACCTTGCATTTGTGCAGCTTCGAAA ] [+] EMBL BM636719 [ cCGCTCTGATAATGCTGGGAGTAACAATTCTATTGGTCGCGTTGCACGGCGCACATCAAGCTACGGCACAGTTGAATACATGTACCGGTGGCAAGATCTGCATCCCGATCGAGCAATGCCCACTGTTTGGGTCTAACTCAAGGGCCACGTGGACAGAGGCAACAATGAATCAGTTTAGAGCGCGTGTCTGTGAGAGGGAACCCACTATCGATGGGTGGACTAAGTACAAGGTATGTTGCGAACCACCGGCTCCCAGCGAACCAAGGGACGGTCGTAAGCCTGGCTTAGATTTGCTTGACCTCAAAGGCTGTGGGATGAACCGAATGCACAGCAACGAATCTGTAGAAAATAATGGTACTCTTGGGAAGCTTCCATGGATAGCATTACTAAAAACAAGTTCCGGGGAGTATCACTGTGCCGGAACCTTAATCAGTAAACGCTACGTGCTGACGACTGCGTTCTGCATAATAAGCAAGAACCTTGCATTTGTGCAGCTTCGAAAGAAGGATTGTGATGAGCGCGGCGCGTGTACACTGAAACCTCAAGACATTCCCATCGAACGCACCATCGGACACGATAGTTCCAAC AAGCCATGGCTGTTTAACAACATCGGCCTGGTACGTTTGGCACGAGACGCATC ] [+] EMBL BM651954 [ CCGTGATAATGCTGGGAGTAACAATTCTATTGGTCGCGTTGCACGGCGCACATCAAGCTACGGCACAGTTGAATACATGTACCGGTGGCAAGATCTGCATCCCGATCGAGCAATGCCCACTGTTTGGGTCTAACTCAAGGGCCACGTGGACAGAGGCAACAATGAATCAGTTTAGAGCGCGTGTCTGTGAGAGGGAACCCACTATCGATGGGTGGACTAAGTACAAGGTATGTTGCGAACCACCGGCTCCCAGCGAACCAAGGGACGGTCGTAAGCCTGGCTTAGATTTGCTTGACCTCAAAGGCTGTGGGATGAACCGAATGCACAGCAACGAATCTGTAGAAAATAATGGTACTCTTGGGAAGCTTCCATGGATAGCATTACTAAAAACAAGTTCCGGGGAGTATCACTGTGCCGGAACCTTAATCAGTAAACGCTACGTGCTGACGACTGCGTTCTGCATAATAAGCAAGAACCTTGCATTTGTGCAGCTTCGAAAGAAGGATTGTGATGAGCGCGGCGCGTGTACACTGAAACCTCAAGACATTCCCATCGAACGCACCATCGGACACGATAGTTCCAAC AAGCCATGGCTGTTTAACA ] [+] EMBL BM644276 [ ccgGCTGGGAGTAACAATTCTATTGGTCGCGTTGCACGGCGCACATCAAGCTACGGCACAGTTGAATACATGTACCGGTGGCAAGATCTGCATCCCGATCGAGCAATGCCCACTGTTTGGGTCTAACTCAAGGGCCACGTGGACAGAGGCAACAATGAATCAGTTTAGAGCGCGTGTCTGTGAGAGGGAACCCACTATCGATGGGTGGACTAAGTACAAGGTATGTTGCGAACCACCGGCTCCCAGCGAACCAAGGGACGGTCGTAAGCCTGGCTTAGATTTGCTTGACCTCAAAGGCTGTGGGATGAACCGAATGCACAGCAACGAATCTGTAGAAAATAATGGTACTCTTGGGAAGCTTCC ] [+] EMBL BM607334 [ ccgGTTGCACGGCGCACATCAAGCTACGGCACAGTTGAATACATGTACCGGTGGCAAGATCTGCATCCCGATCGAGCAATGCCCACTGTTTGGGTCTAACTCAAGGGCCACGTGGACAGAGGCAACAATGAATCAGTTTAGAGCGCGTGTCTGTGAGAGGGAACCCACTATCGATGGGTGGACTAAGTACAAGGTATGTTGCGAACCACCGGCTCCCAGCGAACCAAGGGACGGTCGTAAGCCTGGCTTAGATTTGCTTGACCTCAAAGGCTGTGGGATGAACCGAATGCACAGCAACGAATCTGTAGAAAATAATGGTACTCTTGGGAAGCTTCCATGGATAGCATTACTAAAAACAAGTTCCGGGGAGTATCACTGTGCCGGAACCTTAATCAGTAAACGCTACGTGCTGACGACTGCGTTCTGCATAATAAGCAAGAACCTTGCATTTGTGCAGCTTCGAAAGAAGGATTGTGATGAGCGCGGCGCGTGTACACTGAAACCTCAAGACATTCCCATCGAACGCACCATCGGACACGATAGTTCCAACAAAGCCATGGCTGTTTAACAACATCGGCCTGGTACGTTTGGCACGAGACGCATCGTTTAATAGTGATGTACGTCCAATCTGTCTCCCAATGGGA ] [+] EMBL BX623096 [ AATCTGTAGAAAATAATGGTACTCTTGGGAAGCTTCCATGGATAGCATTACTAAAAACAAGTTCCGGGGAGTATCACTGTGCCGGAACCTTAATCAGTAAACGCTACGTGCTGACGACTGCGTTCTGCATAATAAGCAAGAACCTTGCATTTGTGCAGCTTCGAAAGAAGGATTGTGATGAGCGCGGCGCGTGTACACTGAAACCTCAAGACATTCCCATCGAACGCACCATCGGACACGATAGTTCCAAC AAGCCATGGCTGTTTAACAACATCGGCCTGGTACGTTTGGCACGAGACGCATCGTTTAATAGTGATGTACGTCCAATCTGTCTCCCAATGGGACCCGAATATCAGACGACAGATACAAAATATTTCATTGTTACACGAAAAGAGGATTACGCTTTGTTGGACACAGACGCTGTAGCGATAAGCGAAGTTCATCTAGTTGCAAACGAGTATTGTCAAAGTTGGCTACAGAGGACGGTTCATAATTCTCAGATGTGTGCGATCGAATTGGCTCCAAACGATGATTGTGCAAAACCATACGGTGCATCACTAACAGCTCAGGCCCGCAATGGACGCCACGTCATGTACGGGGCACATGCTTTTGGGATGGACATTTGCACGCAAAATGAATCCACCGTGTACACCAGAGTGGAAAGTTTCGTTGATTGGATACTGAGTAATATCGAAGAGTGATCGTGTGATCGAACGTTCCTCTTGGAACTCTTTTTCAAAAACATACATTGTTTATGGATGATTTGATCGATTCTAAAAATGACNATAAATAGTAGCGAAAGNTTAGT] [+] EMBL BX617164 [ TAGAAAATAATGGCACTCTTGGGAAGCTTCCATGGATAGCATTACTAAAAACAAGTTCCGGGGAGTATCACTGTGCCGGAACCTTAATCAGTAAACGCTACGTGCTGACGACTGCGTTCTGCATAATAAGCAAGAACCTTGCATTTGTGCAGCTTCGAAAGAAGGATTGTGATGAGCGCGGCGCGTGTACACTGAAACCTCAAGACATCCCCATCGAACGCACCATCGGACACGATAGTTCCAAC AAGCCATGGCTGTTTAACAACATCGGCCTGGTACGTTTGGCACGAGACGCATCGTTTAATAGTGATGTACGTCCAATCTGTCTCCCAATGGGACCCGAATATCATACGACAGATAAAAAATATTTCATTGTTACACGAAAAGAGGATTACGCTTTGTTGGACACAGACGCGGTAGCGATAAGCGAAGTTCATCTGGTTGCAAACGAGTATTGTCAAAGTTGGCTACAGAGGACGGTTCATAATTCTCAGATGTGTGCGATCGAATTGGCTCCAAACGATGATTGTGCAAAACCATACGGTGCATCACTCACAGCTCAAGCCCGCAATGGACGCCACGTCATGTACGGGGCACATGCTTTTGG ] consensusID : consensus_7955#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence [CCGCAGAGGCGAAAGAAGTCAATAGGCTCAAAAACTCTATAAAAATCAATAAAAATAATCGTCCAGAGAATGCTGAGAGTAACAATTCTACTGATCGCGCTGCACGGCGCACATCAAGCTACGGCACATTTGCTTGACCTCGAAGGCTGTGGAATGAACCGGATGCAAAACAACGAAACTTTGGGAAATAATGACAATCTTGGGCAGCTTCCATGGATAGCGTCGATAAAATCGAGTTCTGGGCAACATATCTGTGGCGGCAGTTTGATCAGTAAACGCTACGTGCTGACGGCTGCCCATTGCTTAGGACACAACGATCTTGCATTTGTTCAGCTACGAAAGAAGGATTGTGATGAGAGCGGCGTGTGCACACTAGCAAAAGAAGACATCCCCATCGAACGCACCATCGGACACGATAGTTACAACAAACCAGTGCAGTCGCACGACATCGCCCTGGTGCGTTTGACACGAGACGCATCGTTTAATAGCGATGTACGCCCAATTTGTCTCCCAATGGGACCCGAATACCAGACGACGGCATCTAAGTACTTCGTAGCTCCACGAGGACAGGACTACGCTTCGTTGAACACTGACACGATTGACATTACTGAGGTTGATCTGGTCACAGCTGATCAGTGTC] [+] EMBL BM635037 [CCGCAGAGGCGAAAGAAGTCAATAGGCTCAAAAACTCTATAAAAATCAATAAAAATAATCGTCCAGAGAATGCTGAGAGTAACAATTCTACTGATCGCGCTGCACGGCGCACATCAAGCTACGGCACATTTGCTTGACCTCGAAGGCTGTGGAATGAACCGGATGCAAAACAACGAAACTTTGGGAAATAATGACAATCTTGGGCAGCTTCCATGGATAGCGTCGATAAAATCGAGTTCTGGGCAACATATCTGTGGCGGCAGTTTGATCAGTAAACGCTACGTGCTGACGGCTGCCCATTGCTTAGGACACAACGATCTTGCATTTGTTCAGCTACGAAAGAAGGATTGTGATGAGAGCGGCGTGTGCACACTAGCAAAAGAAGACATCCCCATCGAACGCACCATCGGACACGATAGTTACAACAAACCAGTGCAGTCGCACGACATCGCCCTGGTGCGTTTGACACGAGACGCATCGTTTAATAGCGATGTACGCCCAATTTGTCTCCCAATGGGACCCGAATACCAGACGACGGCATCTAAGTACTTCGTAGCTCCACGAGGACAGGACTACGCTTCGTTGAACACTGACACGATTGACATTACTGAGGTTGATCTGGTCACAGCTGATCAGTGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7955#0 CCGCCCACGCGTCCGCCCACGCGCCCTGATAATGCTGGGAGTAACAATTCTATTGGTCGC 60 consensus_7955#1 ------------------------------------------------------------ consensus_7955#0 GTTGCACGGCGCACATCAAGCTACGGCACAGTTGAATACATGTACCGGTGGCAAGATCTG 120 consensus_7955#1 ------------------------------------------------------------ consensus_7955#0 CATCCCGATCGAGCAATGCCCACTGTTTGGGTCTAACTCAAGGGCCACGTGGACAGAGGC 180 consensus_7955#1 --------------------------------------------------CCGCAGAGGC 10 ******* consensus_7955#0 AACAATGAATCAGTTTAGAGCGCGTGTCTGTGAGAGGGAACCCACTATCGATGGGTGGAC 240 consensus_7955#1 GA-AAGAAGTCAATAGGCTCAAAAACTCTATAA-----AAATCAATAAAAATAATCGTCC 64 * ** * *** * *** * * ** ** ** ** * * consensus_7955#0 TAAGTACAAGGTATGTTGCGAACCACCGGCTCCCAGCGAACCAAGGGACGGTCGTAAGCC 300 consensus_7955#1 AGAGAATGCTGAGAGTAACAATTCTACTGATCGCGCTGCAC-----GGCGCACATCAAGC 119 ** * * ** * * * * * ** * * ** * ** * * * * consensus_7955#0 TGGCTTAGATTTGCTTGACCTCAAAGGCTGTGGGATGAACCGAATGCACAGCAACGAATC 360 consensus_7955#1 TACGGCACATTTGCTTGACCTCGAAGGCTGTGGAATGAACCGGATGCAAAACAACGAAAC 179 * * ************** ********** ******** ***** * ******* * consensus_7955#0 TGTAGAAAATAATGGTACTCTTGGGAAGCTTCCATGGATAGCATTACTAAAAACAAGTTC 420 consensus_7955#1 TTTGGGAAATAATGACAATCTTGGGCAGCTTCCATGGATAGCGTCGATAAAATCGAGTTC 239 * * * ******** * ******* **************** * ***** * ***** consensus_7955#0 CGGGGAGTATCACTGTGCCGGAACCTTAATCAGTAAACGCTACGTGCTGACGACTGCGTT 480 consensus_7955#1 TGGGCAACATATCTGTGGCGGCAGTTTGATCAGTAAACGCTACGTGCTGACGGCTGCCCA 299 *** * ** ***** *** * ** ************************ **** consensus_7955#0 CTGCATAATAAGCAAGAACCTTGCATTTGTGCAGCTTCGAAAGAAGGATTGTGATGAGCG 540 consensus_7955#1 TTGCTTAGGACACAACGATCTTGCATTTGTTCAGCTACGAAAGAAGGATTGTGATGAGAG 359 *** ** * *** * *********** ***** ********************* * consensus_7955#0 CGGCGCGTGTACACTGAAACCTCAAGACATTCCCATCGAACGCACCATCGGACACGATAG 600 consensus_7955#1 CGGCGTGTGCACACTAGCAAAAGAAGACATCCCCATCGAACGCACCATCGGACACGATAG 419 ***** *** ***** * ******* ***************************** consensus_7955#0 TTCCAACAAGCCATGGCTGTTTAACAACATCGGCCTGGTACGTTTGGCACGAGACGCATC 660 consensus_7955#1 TTACAACAAACCAGTGCAGTCGCACGACATCGCCCTGGTGCGTTTGACACGAGACGCATC 479 ** ****** *** ** ** ** ****** ****** ****** ************* consensus_7955#0 GTTTAATAGTGATGTACGTCCAATCTGTCTCCCAATGGGACCCGAATATCAGACGACAGA 720 consensus_7955#1 GTTTAATAGCGATGTACGCCCAATTTGTCTCCCAATGGGACCCGAATACCAGACGACGGC 539 ********* ******** ***** *********************** ******** * consensus_7955#0 TACAAAATATTTCATTGTTACACGAAAAGAGGATTACGCTTTGTTGGACACAGACGCTGT 780 consensus_7955#1 ATCTAAGTACTTCGTAGCTCCACGAGGACAGGACTACGCTTCGTTGAACACTGACACGAT 599 * ** ** *** * * * ***** * **** ******* **** **** *** * * consensus_7955#0 AGCGATAAGCGAAGTTCATCTAGTTGCAAACGAGTATTGTCAAAGTTGGCTACAGAGGAC 840 consensus_7955#1 TGACATTACTGAGGTTGATCTGGTCACAGCTGATCAGTGTC------------------- 640 * ** * ** *** **** ** ** ** * **** consensus_7955#0 GGTTCATAATTCTCAGATGTGTGCGATCGAATTGGCTCCAAACGATGATTGTGCAAAACC 900 consensus_7955#1 ------------------------------------------------------------ consensus_7955#0 ATACGGTGCATCACTAACAGCTCAGGCCCGCAATGGACGCCACGTCATGTACGGGGCACA 960 consensus_7955#1 ------------------------------------------------------------ consensus_7955#0 TGCTTTTGGGATGGACATTTGCACGCAAAATGAATCCACCGTGTACACCAGAGTGGAAAG 1020 consensus_7955#1 ------------------------------------------------------------ consensus_7955#0 TTTCGTTGATTGGATACTGAGTAATATCGAAGAGTGATCGTGTGATCGAACGTTCCTCTT 1080 consensus_7955#1 ------------------------------------------------------------ consensus_7955#0 GGAACTCTTTTTCAAAAACATACATTGTTTATGGATGATTTGATCGATTCTAAAAATGAC 1140 consensus_7955#1 ------------------------------------------------------------ consensus_7955#0 NATAAATAGTAGCGAAAGNTTAGT 1164 consensus_7955#1 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||