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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7958#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1029 fasta sequence
[GGGTTAGCACATTGTGCATATTTTAAACCTCGTTGCAAGCATAATTACCCTCGCCAAAATGTCTCCTAAAAGAGCCTTTTACCGCACGGGCGACGCATTTGCGATGAGGTGCTGGGTCTGCTGGAAAAGTTCGCCAATGAAACGCTCGCCAAGCAGGACCACTTTCGTGTTGGTGTGTCGGGTGGCTCGCTGGCGGACATTCTCTGCGAGGGCATGTCCGATCTGCGGTCCGATTTCAGCAAATGGCAGATCTTCTTCTGCGACGAGCGTGTCGTCCCGGTCACCGATAAGGAGTCGACGTGGGGCATCTTCAAGCGCGATCTGCTCGCCAACTGTGATAACATACCGGAGAGTGTGTTCTTCCCGGTAAACGCATCGCTCGATGTGAACGAAGCCGCCGCTGATTACGAGCGAATGATCCGCAAAGCATTCGGGCTGGAAAAGCCGGAAGAGGTGCCATCGTTTGATCTGTTGATTTTGGGCATTGGCCCGGACGGACACACGGCCTCCCTGTTCCCGGGGCATCCGTTGCTCGGGGAGAAGAAAATGCTGATTGCACCGATCGAAAACTCACCGAAACCGCCACCGAAGCGTGTGACGATGACGCTGCCCCTGATTAACAATGCCAAGGTGTGCCTGTTCGGGGCGCAGGGCCGTGGCAAGGCGGAAATGTTGAAGCGTATCGTAGCGGACAGGGACAGCTCGCTGCCGGCCACGCTGGTCGATCCATCCGAGGGTGAGCTCATCTTTGTGGCGTGCGATGAAGCGGCCTCCCTCATAGAGGGTGACCCCTTCCCACGATCATAATCGCGAACTCCCCAGCCTTTTACGGTGCCTTAAGAGCAAAAGTGCGCAGCTC-GGATCACAAAATTCCAAACACTTACTTACACACCATGGCATTTAATCATCACGTTCGTGGCGGAATGGTTTTTTATTATTTTACTTTAACTTTATTCTAACTCCTTTTTCGTGTGTGTATGTGCGTGTGTACAATAAATTACAACCAATACTAATGTATACGTAAAAAAA]
[+] EMBL CNS09HCN [GGGTTAGCACATTGTGCATATTTTAAACCTCGTTGCAAGCATAATTACCCTCGCCAAAATGTCTCCTAAAAGAGCCTTTTACCGCACGGGCGACGCATTTGCGATGAGGTGCTGGGTCTGCTGGAAAAGTTCGCCAATGAAACGCTCGCCAAGCAGGACCACTTTCGTGTTGGTGTGTCGGGTGGCTCGCTGGCGGACATTCTCTGCGAGGGCATGTCCGATCTGCGGTCCGTTTTCAGCAAATGGCAGATCTTCTTCTGCGACGAGCGTGTCGTCCCGGTCACCGATAAGGAGTCGACGTGGGGCATCTTCAAGCGCGATCTGCTCGCCAACTGTGATAACATACCGGAGAGTGTGTTCTTCCCGGTAAACGCATCGCTCGATGTGAACGAAGCCGCCGCTGATTACGAGCGAATGATCCGCAAAGCATTCGGGCTGGAAAAGCCGGAAGAGGTGCCATCGTTTGATCTGTTGATTTTGGGCATTGGCCCGGACGGACACACGGCCTCCCTGTTCCCGGGGCATCCGTTGCTCGGGGAGAAGAAAATGCTGATTGCACCGATCGAAAACTCACCGAAACCGCCACCGAAGCGTGTGACGATGACGCTGCCCCTGATTAACAATGCCAAGGTGTGCCTGTTCGGGGCGCAGGGCCGTGGCAAGGCGGAAATGTTGAAGCGTATCGTAGCGGACAGGGACAGCTCGCTGCCGGCCACGCTGGTCGATCCATCCGAGGGTGAGCTCATCTTTGTGGCGTGCGATGAAGCGGCCTCCCTCATAGAGGGTGACCCCTTCCCACGATCATAATCGCGAACTCCCCAGCCTTTTACGGTGCCTTAAGAGCAAAAGTGCGCA CTCGGGATCACAAAATTCCAAACACTTACTTACACACCATGGCATTTAATCATCACGTTCGTGGCGGAATGGTTTTTTATTATTTTACTTTAACTTTATTCTAA ]
[+] EMBL BX615494 [ AGGTGCTGGGTCTGCTGGAAAAGTTCGCCAATGAAACGCTCGCCAAGCAGGACCACTTTCGTGTTGGTGTGTCGGGTGGCTCGCTGGCGGACATTCTCTGCGAGGGCATGTCCGATCTGCGGTCCGATTTCAGCAAATGGCAGATCTTCTTCTGCGACGAGCGTGTCGTCCCGGTCACCGATAAGGAGTCGACGTGGGTCATCTTCAAGCGCGATCTGCTCGCCAACTGTGATAACATACCGGAGAGTGTGTTCTTCCCGGTAAACGCATCGCTCGATGTGAACGAAGCCGCCGCTGATTACGAGCGAATGATCCGCAAAGCATTCGGGCTGGAAAAGCCGGAAGAGGTGCCATCGTTTGATCTGTTGATTTTGGGCATTGGCCCGGACGGACACACGGCCTCCCTGTTCCCGGGGCATCCGTTGCTCGGGGAGAAGAAAATGCTGATTGCACCGATCGAAAACTCACCGAAACCGCCACCGAAGCGTGTGACGATGACGCTGCCCCTGATTAACAATGCCAAGGTGTGCCTGTTCGGGGCGCAGGGCCGTGGCAAGGCGAAAATGTTGAAGCGTATCGTAGCGGACAGGGACAGCTCGCTGCCGGCCACGCTGGTCGATCCATCCGAGGGTGAGCTCATCTTTGTGGCGTGCGATGAAGCGGCCTCCCTCATAGAGGGTGACCCCTTCCCACGATCATAATCGCGAACTCCCCAGCCTTTTACGGTGCCTTAAGAGCAAAAGTGCGC ]
[+] EMBL BM635104 [ TGTCGGGTGGCTCGCTGGCGGACTTTCTCTGCGAGGGCATGTCCGATCTGCTGTCCGATTTCAGCAAATGGCAGATCTTCTTCTGCAACTAGCGTGTCGTCCCGGGCACCGATAAGGAGTCCACGTGGGGCATCTTCAAGCGCGATCTGCTCGCCAACTGGGATAACATACCGGATAGTGTGTTCTTCACGGTAAACGCATC ]
[+] EMBL BX616412 [ GTCGGGTGGCTCGCTGGCGGACATTCTCTGCGAGGGCATGTCCGATCTGCGGTCCGATTTCAGCAAATGGCAGATCTTCTTCTGCGACGAGCGTGTCGTCCCGGTCACCGATAAGGAGTCGACGTGGGGCATCTTCAAGCGCGATCTGCTCGCCAACTGTGATAACATACCGGAGAGTGTGTTCTTCCCGGCAAACGCATCGCTCGATGTGAACGAAGCCGCCGCTGATTACGAGCGAATGATCCGCAAAGCATTCGGGCTGGAAAAGCCGGAAGAGGTGCCATCGTTTGATCTGTTGCTTTTGGGCATTGGCCCGG ]
[-] EMBL CNS09HCO [ GACATTTTCTGCGAGGGCATGTCCGATCTGCGGTCCGATTTCAGCAAATGGCAGATCTTCTTCTGCGACGAGCGTGTCGTCCCGGTCACCGATAAGGAGTCGACGTGGGGCATCTTCAAGCGCGATCTGCTCGCCAACTGTGATAACATACCGGAGAGTGTGTTCTTCCCGGTAAACGCATCGCTCGATGTGAACGAAGCCGCCGCTGATTACGAGCGAATGATCCGCAAAGCATTCGGGCTGGAAAAGCCGGAAGAGGTGCCATCGTTTGATCTGTTGATTTTGGGCATTGGCCCGGACGGACACACGGCCTCCCTGTTCCCGGGGCATCCGTTGCTCGGGGAGAAGAAAATGCTGATTGCACCGATCGAAAACTCACCGAAACCGCCACCGAAGCGTGTGACGATGACGCTGCCCCTGATTAACAATGCCAAGGTGTGCCTGTTCGGGGCGCAGGGCCGTGGCAAGGCGGAAATGTTGAAGCGTATCGTAGCGGACAGGGACAGCTCGCTGCCGGCCACGCTGGTCGATCCATCCGAGGGTGAGCTCATCTTTGTGGCGTGCGATGAAGCGGCCTCCCTCATAGAGGGTGACACCTTCCCACGATCATAATCGCGAACTCCCCAGCCTTTTACGGTGCCTTAAGAGCAAAAGTGCGCAGCTC GGATCACAAAATTCCAAACACTTACTTACACACCATGGCATTTAATCATCACGTTCGTGGCGGAATGGTTTTTTATTATTTTACTTTAACTTTATTCTAACTCCTTTTTCGTGTGTGTATGTGCGTGTGTACAATAAATTACAACCAATACTAATGTATACGTAAAAAAA]
[+] EMBL BM633281 [ ccgGCAAATGGCAGATCTTCTTCTGCGACGAGCGTGTCGTCCCGGTCACCGATAAGGAGTCGACGTGGGGCATCTTCAAGCGCGATCTGCTCGCCAACTGTGATAACATACCGGAGAGTGTGTTCTTCCCGGTAAACGCATCGCTCGATGTGAACGAAGCCGCCGCTGATTACGAGCGAATGATCCGCAAAGCATTCGGGCTGGAAAAGCCGGAAGAGGTGCCATCGTTTGATCTGTTGATTTTGGGCATTGGCCCGGACGGACACACGGCCTCCCTGTTCCCGGGGCATCCGTTGCTCGGGGAGAAGAAAATGCTGATTGCACCGATCGAAAACTCACCGAAACCGCCACCGAAGCGTGTGACGATGACGCTGCCCCTGATTAACAATGCCAAGGTGTGCCTGTTCGGGGCGCAGGGCCGTGGCAAGGCGGAAATGTTGAAGCGTATCGTAGCGGACAGGGACAGCTCGCTGCCGGCCACGCTGGTCGATCCATCCGAGGGTGAGCTCATCTTTGTGGCGTGCGATGAAGCGGCCTCCCTCATAGAGGGTGACCCCTTCCCACGATCATAATCGCGAACTCCCCAGCCTTTTACGGTGCCTTAAGAGCAAAAGTGCGCAGCTC GGATCACAAAATTCCAAACACTTACTTACACACCATGGCATTTAATCATCACGTTCGTGG ]
consensusID : consensus_7958#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 678 fasta sequence
[GGTTAATCGTTGGCAGTGTGCATATTTAAAACACGC-TGCAAGCATAATTA---T--CCAAAATGTCTCCAAAACGAGCCTTTTACCGCACGGGCGACGCCATTTGCGATGAGGTGCTGGGCCTGCTGGAAAAGTTCGCCAACGAAACGCTCGCCAAGCAGGACCACTTTCGTGTCGGTGTGTCGGGTGGCTCGCTGGCGGACATTCTCTGCGAGGGCATGTCCGATCTGCGGTCCGATTTCAGCAAATGGCAGATCTTCTTCTGCGACGAGCGTGTCGTCCCGGTCACCGATAAGGAGTCGACGTGGGGCATCTTCAAGCGCGATCTGCGTCGCCAACTGTGATAACATACCGGAGAGTGTGTTCTTCCCGGTAAACGCCTCGCTCGATGTGAACGAAGCCGCCGCCGATTACGAGCAAAAGATCCGCAAAGGCATTCGGGCTGGAAAAGCCGGAAGAGGTGCCATCGTTTGATTTGTTGATTTTGGGCATTGG-CCGGATGGACACACGGGCTCCCTGTTCCCGGGCCATCCGTTGCTCGGGGGAGAAGAAAAAACTGATTGCACCGATCGAAAACTCGGCCGAAACCGGCACCGAAGACGTGTGACGATGACGGCTTGCCCTGATTAACAATGCCCAAGGTGTTGCCTGTACGGGGCTGCAGGGGCCGGTGGCAAGGCGGCA]
[+] EMBL AL693885 [GGTTAATCGTTGGCAGTGTGCATATTTAAAACACGC TGCAAGCATAATTA T CCAAAATGTCTCCAAAACGAGCCTTTTACCGCACGGGCGACGCCATTTGCGATGAGGTGCTGGGCCTGCTGGAAAAGTTCGCCAACGAAACGCTCGCCAAGCAGGACCACTTTCGTGTCGGTGTGTCGGGTGGCTCGCTGGCGGACATTCTCTGCGAGGGCATGTCCGATCTGCGGTCCGATTTCAGCAAATGGCAGATCTTCTTCTGCGACGAGCGTGTCGTCCCGGTCACCGATAAGGAGTCGACGTGGGGCATCTTCAAGCGCGATCTGCGTCGCCAACTGTGATAACATACCGGAGAGTGTGTTCTTCCCGGTAAACGCCTCGCTCGATGTGAACGAAGCCGCCGCCGATTACGAGCAAAAGATCCGCAAAGGCATTCGGGCTGGAAAAGCCGGAAGAGGTGCCATCGTTTGATTTGTTGATTTTGGGCATTGG CCGGATGGACACACGGGCTCCCTGTTCCCGGGCCATCCGTTGCTCGGGGGAGAAGAAAAAACTGATTGCACCGATCGAAAACTCGGCCGAAACCGGCACCGAAGACGTGTGACGATGACGGCTTGCCCTGATTAACAATGCCCAAGGTGTTGCCTGTACGGGGCTGCAGGGGCCGGTGGCAAGGCGGCA]
[+] EMBL BM614602 [ ccgcggACGCGTGGGA CATAATTACCCTCGCCAAAATGTCTCCAAAAAGAGCCTTTTACCGCACGGGCGACGCCATTTGCGATGAGGTGCTGGGTCTGCTGGAAAAGTTCGCCAACGAAACGCTCGCCAAGCAGGACCACTTTCGTGTCGGTGTGTCGGGTGGCTCGCTGGCGGACATTCTCTGCGAGGGCATGTCCGATCTGCGGTCCGATTTCAGCAAATGGCAGATCTTCTTCTGCGACGAGCGTGTCGTGCCGGTCACCGATAAGGAGTCGACGTGGGGCATCTTCAAGCGCGATCTGC TCGCCAACTGTGATAACATACCGGAGAGTGTGTTCTTCCCGGTAAACGCATCGCTCGATGTGAACGAAGCCGCAGCCGATTACGAACGAAAGATCCGCAAA GCATTCGGGCTGGAAAAGCCGGAAGAGGTGCCATCGTTTGATCTGTTGATTTTGGGCATTGGCCCGGACGGACACACGGCCTCCCTGTTCCCGGGGCATCCGTTGCTC GGGGAGAAGAAAAAGCTGATTGCACCGATCGAAAACTC GCCGAAACCGCCACCGAAG CGTGTGACGATGAC GCTGCCCCTGATTAACAATG CCAAGGTG TGCCTGTTCGGGGC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7958#0 GGGTTAGC-----ACATTGTGCATATTTTAAACCTCGTTGCAAGCATAATTACCCTCGCC 55
consensus_7958#1 -GGTTAATCGTTGGCAGTGTGCATATTT-AAAACACGCTGCAAGCATAATTATCC----- 53
***** ** *********** *** * ** ************** **
consensus_7958#0 AAAATGTCTCCTAAAAGAGCCTTTTACCGCACGGGCGACGC-ATTTGCGATGAGGTGCTG 114
consensus_7958#1 AAAATGTCTCCAAAACGAGCCTTTTACCGCACGGGCGACGCCATTTGCGATGAGGTGCTG 113
*********** *** ************************* ******************
consensus_7958#0 GGTCTGCTGGAAAAGTTCGCCAATGAAACGCTCGCCAAGCAGGACCACTTTCGTGTTGGT 174
consensus_7958#1 GGCCTGCTGGAAAAGTTCGCCAACGAAACGCTCGCCAAGCAGGACCACTTTCGTGTCGGT 173
** ******************** ******************************** ***
consensus_7958#0 GTGTCGGGTGGCTCGCTGGCGGACATTCTCTGCGAGGGCATGTCCGATCTGCGGTCCGAT 234
consensus_7958#1 GTGTCGGGTGGCTCGCTGGCGGACATTCTCTGCGAGGGCATGTCCGATCTGCGGTCCGAT 233
************************************************************
consensus_7958#0 TTCAGCAAATGGCAGATCTTCTTCTGCGACGAGCGTGTCGTCCCGGTCACCGATAAGGAG 294
consensus_7958#1 TTCAGCAAATGGCAGATCTTCTTCTGCGACGAGCGTGTCGTCCCGGTCACCGATAAGGAG 293
************************************************************
consensus_7958#0 TCGACGTGGGGCATCTTCAAGCGCGATCTGC-TCGCCAACTGTGATAACATACCGGAGAG 353
consensus_7958#1 TCGACGTGGGGCATCTTCAAGCGCGATCTGCGTCGCCAACTGTGATAACATACCGGAGAG 353
******************************* ****************************
consensus_7958#0 TGTGTTCTTCCCGGTAAACGCATCGCTCGATGTGAACGAAGCCGCCGCTGATTACGAGCG 413
consensus_7958#1 TGTGTTCTTCCCGGTAAACGCCTCGCTCGATGTGAACGAAGCCGCCGCCGATTACGAGCA 413
********************* ************************** **********
consensus_7958#0 AATGATCCGCAAAG-CATTCGGGCTGGAAAAGCCGGAAGAGGTGCCATCGTTTGATCTGT 472
consensus_7958#1 AAAGATCCGCAAAGGCATTCGGGCTGGAAAAGCCGGAAGAGGTGCCATCGTTTGATTTGT 473
** *********** ***************************************** ***
consensus_7958#0 TGATTTTGGGCATTGGCCCGGACGGACACACGGCCTCCCTGTTCCCGGGGCATCCGTTGC 532
consensus_7958#1 TGATTTTGGGCATTGGCC-GGATGGACACACGGGCTCCCTGTTCCCGGGCCATCCGTTGC 532
****************** *** ********** *************** **********
consensus_7958#0 TCGGGG-AGAAGAAAATGCTGATTGCACCGATCGAAAACTCA-CCGAAACCGCCACCGAA 590
consensus_7958#1 TCGGGGGAGAAGAAAAAACTGATTGCACCGATCGAAAACTCGGCCGAAACCGGCACCGAA 592
****** ********* *********************** ********* *******
consensus_7958#0 G-CGTGTGACGATGACG-CTGCCCCTGATTAACAATGCC-AAGGTGT-GCCTGTTCGGGG 646
consensus_7958#1 GACGTGTGACGATGACGGCTTGCCCTGATTAACAATGCCCAAGGTGTTGCCTGTACGGGG 652
* *************** ** ***************** ******* ****** *****
consensus_7958#0 C-GCAGGGCC--GTGGCAAGGCGGAAATGTTGAAGCGTATCGTAGCGGACAGGGACAGCT 703
consensus_7958#1 CTGCAGGGGCCGGTGGCAAGGCGGCA---------------------------------- 678
* ****** * ************ *
consensus_7958#0 CGCTGCCGGCCACGCTGGTCGATCCATCCGAGGGTGAGCTCATCTTTGTGGCGTGCGATG 763
consensus_7958#1 ------------------------------------------------------------
consensus_7958#0 AAGCGGCCTCCCTCATAGAGGGTGACCCCTTCCCACGATCATAATCGCGAACTCCCCAGC 823
consensus_7958#1 ------------------------------------------------------------
consensus_7958#0 CTTTTACGGTGCCTTAAGAGCAAAAGTGCGCAGCTCGGATCACAAAATTCCAAACACTTA 883
consensus_7958#1 ------------------------------------------------------------
consensus_7958#0 CTTACACACCATGGCATTTAATCATCACGTTCGTGGCGGAATGGTTTTTTATTATTTTAC 943
consensus_7958#1 ------------------------------------------------------------
consensus_7958#0 TTTAACTTTATTCTAACTCCTTTTTCGTGTGTGTATGTGCGTGTGTACAATAAATTACAA 1003
consensus_7958#1 ------------------------------------------------------------
consensus_7958#0 CCAATACTAATGTATACGTAAAAAAA 1029
consensus_7958#1 --------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||