These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7975#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1100 fasta sequence [TCGATTAGAGAGCAAACGGGCCACGTTCGATTTGCTGAAAATTGAACTAAACCGGATCCGATTGTGTCCGAACCGCCGATGCCACGCGTACCATCATCCTACAGAACGATCCTCCCAAGTCACGCAAAAACAATCGCTGGAAAGGATCGTCTGCTAGAGAACCGTGCCACCACCGTGGCACCACACAAGATCCGTGCGTCGAAACACACGCGCGACTGCCCCCGCTTCTCCTCCCTCCAGTTTCCCGGCGATCGATCAAAAACCGATTTCTGTCAAACTATTTTAATTCTAGCATAAATTAAATTAAATAGATTTACATAGACATTGTCCTAATCGTTTGGATGGGGTGGGGTGTGGAGCCTTCCCATCTGGCGAAAGGATGCTCGCTCTCCCTCTCTCTCTCTGTGCGCTCATGCCTATCTCTCTATCTGTCTGTTTCCTATTTCTTACGGTTCTTTTGCTGATCTTAAACGTTCCGAATCTCAATGGAGAAGAAGCTTGAGTGAGT--GTGTGTGTGTTCTTATTTCTCTCTTCTATCTGTAGCAGTGTTTTGGCTGAATTTAGGACACCGATA-CCCGTTCTTAACAGTACACCACGCGCACCACCGCAC-AC-CCCCAC-GGGTAATTCGACCCCTTATGCACCTTACTTGGTGGCTGACTTCAGGTAGGCGATCAGATCGCCACGCTC-CTGCGGCTTCTTCAGACCGGCGAACACCATCTTCGTGCCGGGGATGTACTTCTTCGGGTTTTCCAGGTACTCGAACAGCGTGTCCTCGTTCCAGGTGATGCCCTTGGCCTTGTTGGCGTCGGTGTAGCTGAAGCCGGCGGCCTGGCCCGTCTTGCGGCCGAACAGTCCGTGCAGGTTCGGGCCGACCTTGTGCTTGCCACCGGCCTCGACGGTGTGGCACTGAGCGCACCGCTGCACAAACAGCTTCTTGCCCTTCTCAACATCACCAGCTGGGACACCCATTGTTGTTGGTTAAAGATTTGAAGAGCGCGGTTAGGCAAGGAAAATTTTCAACCCAAGCGGGAGCGGGTGCAAACGCGTATAATCGCCACGGGCCCACGCGTCCGCGGACGCGTGGGCCGACGCGTCCGCGG] [+] EMBL CNS08XZ1 [TCGATTAGAGAGCAAACGGGCCACGTTCGATTTGCTGAAAATTGAACTAAACCGGATCCGATTGTGTCCGAACCGCCGATGCCACGCGTACCATCATCCTACAGAACGATCCTCCCAAGTCACGCAAAAACAATCGCTGGAAAGGATCGTCTGCTAGAGAACCGTGCCACCACCGTGGCACCACACAAGATCCGTGCGTCGAAACACACGCGCGACTGCCCCCGCTTCTCCTCCCTCCAGTTTCCCGGCGATCGATCAAAAACCGATTTCTGTCAAACTATTTTAATTCTAGCATAAATTAAATTAAATAGATTTACATAGACATTGTCCTAATCGTTTGGATGGGGTGGGGTGTGGAGCCTTCCCATCTGGCGAAAGGATGCTCGCTCTCCCTCTCTCTCTCTGTGCGCTCATGCCTATCTCTCTATCTGTCTGTTTCCTATTTCTTACGGTTCTTTTGCTGATCTTAAACGTTCCGAATCTCAATGGAGAAGAAGCTTGAGTGAGT GTGTGTGTGTTCTTATTTCTCTCTTCTATCTGTAGCAGTGTTTTGGCTGAATTTAGGACACCGATA CCCGTTCTTAACAGTACACCACGCGCACCACCGCAC AC CCCCAC GGGTAATTCGACCCCTTATGCACCTTACTTGGTGGCCGACTTCAGGTAGGCGATAAAATCGCCACGCTC CTTTGGCTTCTTCAGACCGGCGAACACCATCTTCGTGCCGGGGATGTACTTCTTCGGGTTTTCCAGGTACTCGAACAGCGTGTCCTCGTTCCAGGTGATGCCCTTGGCCTTGTTGGCGTCGGTGTAGCTGAAGCCGGCGGCCTGGCCCGTCTTGCGGCCGAACAGTCCGTGCAGGTTCGGGCCGACCTTGTGCTTGCCACCGGCCTCGACGGTGTGGCACTGGGCGCAC ] [-] EMBL BM591764 [ GCTCGCTCTCCTTCTCTCTCTCTGTGCGCTCATGCCTATCTCTCTATCTGTCTGTTTCCTATTTCTTACGGTTCTTTTGCTGATCTTAAACGTTCCGAATCTCAATGGAGAAGAAGCTTGAGTGAGT GTGTGTGTGTTCTTATTTCTCTCTTCTATCTGTAGCAGTGTTTTGGCTGAATTTAGGACACCGATA CCCGTTCTTAACAGTACACCACGCGCACCACCGCAC AC CCCCAC GGGTAATTCGACCCCTTATGCACCTTACTTGGTGGCTGACTTCAGGTAGGCGATCAGATCGCCACGCTC CTGCGGCTTCTTCAGACCGGCGAACACCATCTTCGTGCCGGGGATGTACTTCTTCGGGTTTTCCAGGTACTCGAACAGCGTGTCCTCGTTCCAGGTGATGCCCTTGGCCTTGTTGGCGTCGGTGTAGCTGAAGCCGGCGGCCTGGCCCGTCTTGCGGCCGAACAGTCCGTGCAGGTTCGGGCCGACCTTGTGCTTGCCACCGGCCTCGACGGTGTGGCACTGAGCGCACCGCTGCACAAACAGCTTCTTGCCCTTCTCAACATCACCAGCTGGGACACCCATTGTTGTTGGTTAAAGATTTGAAGAGCGCGGTTAGGCAAGGAAAATTTTCAACCCAAGCGGGAGCGGGTGCAAACGCGTATAATCGCCACGGGCGGACGCGTGGGCGGACGCGTGGGCgg ] [-] EMBL BM648006 [ TCGCTCTCC CTATCTCTCTGTGCGCTCATGCCTATCTCTCTATCTGTCTG TTCCTATTTCTTACGGTTCTTTTGCTGATCTTAAACGTTCCGAATCTCAATGGAGAAGAAGCTTGAGTGAGTTGGTGTGTGTGTTCTTATTTCTCTCTTCTATCTGTAGCAGTGTTTTGGCTGAATTTAGGACACCGATA CCCGTTCTTAACAGTACACCACGCGCACCACCGCAC AC CCCCAC GGGTAATTCAACCCCTTATGCACCTTACTTGGTGGCCGACTTCAGGTAGGCGATCAGATCGCCACGCTC CTGAGGCTTCTTCAGACCGGCGAACACCATCTTCGTGCCGGGGATGTACTTCTTCGGGTTTTCCAGGTACTCGAACAGCGTGTCCTCGTTCCAGGTGATACCCTTGGCCTTGTTGGCGTCGGTGTAGCTGAAGCCGGCGGCCTGGCCCGTCTTGCGGCCGAACAGTCCGTGCAGGTTCGGGCCGACCTTGTGCTTGCCACCGGCCTCAACGGTGTGGCACTGAGCGCACCGCTGCACGAACAGCTTCTTGCCCTTCTCAACATCACCAGCTGGGACACCCATTGTTGTTGGTTAAAGATTTGAAGAGCGCGGTTAGGCAAGGAAAATTTTCAACCCAAGCGGGAGCGGGTGCAAACGCGTGTAATCGCCACGGGCCCACGCGTCCGCGGACGCGTGGGTCG ] [-] EMBL BM648172 [ CTCTCCCTCTCTCTCTCTGTGCGCTCATGCCTATCTCTCTATCTGTCTGTTTCCTATTTCTTACGGTTCTTTTGCTGATCTTAAACGTTCCGAATCTCAATGGAGAAGAAGCTTGAGTGAGT GTGTGTGTGTTCTTATTTCTCTCTTCTATCTGTAGCAGTGTTTTGGCTGAATTTAGGACACCGATA CCCGTTCTTAACAGTACACCACGCGCACCACCGCAC AC CCCCAC GGGTAATTCGACCCCTTATGCACCTTACTTGGTGGCTGACTTCAGGTAGGCGATCAGATCGCCACGCTC CTGCGGCTTCTTCAGACCGGCGAACACCATCTTCGTGCCGGGGATGTACTTCTTCGGGTTTTCCAGGTACTCGAACAGCGTGTCCTCGTTCCAGGTGATGCCCTTGGCCTTGTTGGCGTCGGTGTAGCTGAAGCCGGCGGCCTGGCCCGTCTTGCGGCCGAACAGTCCGTGCAGGTTCGGGCCGACCTTGTGCTTGCCACCGGCCTCGACGGTGTGGCACTGAGCGCACCGCTGCACAAACAGCTTCTTGCCCTTCTCAACATCACCAGCTGGGACACCCATTGTTGTTGGTTAAAGATTTGAAGAGCGCGGTTAGGCAAGGAAAATTTTCAACCCAAGCGGGAGCGGGTGCAAACGCGTATAATCGCCACGGGCGGACGCGTGGGCGG ] [-] EMBL BM608954 [ CTCTCTGTGCGCTCATGCCTATCTCTCTATCGGTCTGTTTCCTATTTCTTACGGTTCTTTTGCTGATCTTAAACGTTCCGAATCTCAATGGAGAAGAAGCTTGAGTGAGT GTGTGTGTGTTCTTATTTCTCTCTTCTATCTGTAGCAGTGTTTTGGCTGAATTTAGGACACCGATACCCCGTTCTTAACAGTACACCACGCGCACCACCGCACAACTCCCCACGGGGTAATTCGACCCCTTATGCACCTTACTTGGTGGCTGACTTCAGGTAGGCGATCAGATCGCCACGCTCTCTGCGGCTTCTTCAGACCGGCGAACACCATCTTCGTGCCGGGGATGTACTTCTTCGGGTTTTCCAGGTACTCGAACAGCGTGTCCTCGTTCCAGGTGATGCCCTTGGCCTTGTTGGCGTCGGTGTAGCTGAAGCCGGCGGCCTGGCCCGTCTTGCGGCCGAACAGTCCGTGCAGGTTCGGGCCGACCTTGTGCTTGCCACCGGCCTCGACGGTGTGGCACTGGGCGCACCGCTGTACGAACAGCTTCTTGCCCTTCTCAACATCACCAGCTGGGACACCCATTGTTGTTGGTTAAAGATTTGAAGAGCGCGGTTAGGCAAGGAAAATTTTCAACCCAAGCGGGAGCGGGTGCAAACGCGTGTAATCGCCAC GCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCGG] [-] EMBL BM639638 [ AGCAGTGTTTTGGCTGAATTTAGGACACCGATA CCCGTTCTTAACAGTACACCACGCGCACCACCGCAC AC CCCCAC GGGTAATTCGACCCCTTATGCACCTTACTTGGTGGCTGACTTCAGGTAGGCGATCAGATCGCCACGCTC CTGCGGCTTCTTCAGACCGGCGAACACCATCTTCGTGCCGGGGATGTACTTCTTCGGGTTTTCCAGGTACTCGAACAGCGTGTCCTCGTTCCAGGTGATGCCCTTGGCCTTGTTGGCGTCGGTGTAGCTGAAGCCGGCGGCCTGGCCCGTCTTGCGGCCGAACAGTCCGTGCAGGTTCGGGCCGACCTTGTGCTTGCCACCGGCCTCGACGGTGTGGCACTGAGCGCACCGCTGCACAAACAGCTTCTTGCCCTTCTCAACATCACCAGCTGGGACACCCATTGTTGTTGGTTAAAGATTTGAAGAGCGCGGTTAGGCAAGGAAAATTTTCAACCCAAGCGGGAGCGGGTGCAAACGCGTATAATCGCCAC CCCACGCGTCCGCGG ] consensusID : consensus_7975#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 637 fasta sequence [GGTTCTTTTGCTGATCTTAAACGTTCCGAATCTCAATGGAGAAGAAGCTTGAGTGAGTTGGTGTGTGTGTTCTTATTTCTCTCTTCTATCTGTAGCAGTGTTTTGGCTGAATTTAGGACACCGATACCCGTTCTTAACAGTACACCACGCGCACCACCGCACACCCCCACGGGTAATTCAACCCCTTATGCACCTTACTTGGTGGCCGACTTCAGGTAGGCGATCAGATCGCCACGCTCCTGAGGCTTCTTCAGACCGGCGAACACCATCTTCGTGCCGGGGATGTACTTCTTCGGGTTTTCCAGGTACTCGAACAGCGTGTCCTCGTTCCAGGTGATACCCTTGGCCTTGTTGGCGTCGGTGTAGCTGAAGCCGGCGGCCTGGCCCGTCTTGCGGCCGAACAGTCCGTGCAGGTTCGGGCCGACCTTGTGCTTGCCACCGGCCTCAACGGTGTGGCACTGAGCGCACCGCTGCACGAACAGCTTCTTGCCCTTCTCAACATCACCAGCTGGGACACCCATTGTTGTTGGTTAAAGATTTGAAGAGCGCGGTTAGGCAAGGAAAATTTTCAACCCAAGCGGGAGCGGGTGCAAACGCGCGGACGCGTGGGTCGACGGGTCCGCCCACGCGTCCGCGG] [-] EMBL BM625071 [GGTTCTTTTGCTGATCTTAAACGTTCCGAATCTCAATGGAGAAGAAGCTTGAGTGAGTTGGTGTGTGTGTTCTTATTTCTCTCTTCTATCTGTAGCAGTGTTTTGGCTGAATTTAGGACACCGATACCCGTTCTTAACAGTACACCACGCGCACCACCGCACACCCCCACGGGTAATTCAACCCCTTATGCACCTTACTTGGTGGCCGACTTCAGGTAGGCGATCAGATCGCCACGCTCCTGAGGCTTCTTCAGACCGGCGAACACCATCTTCGTGCCGGGGATGTACTTCTTCGGGTTTTCCAGGTACTCGAACAGCGTGTCCTCGTTCCAGGTGATACCCTTGGCCTTGTTGGCGTCGGTGTAGCTGAAGCCGGCGGCCTGGCCCGTCTTGCGGCCGAACAGTCCGTGCAGGTTCGGGCCGACCTTGTGCTTGCCACCGGCCTCAACGGTGTGGCACTGAGCGCACCGCTGCACGAACAGCTTCTTGCCCTTCTCAACATCACCAGCTGGGACACCCATTGTTGTTGGTTAAAGATTTGAAGAGCGCGGTTAGGCAAGGAAAATTTTCAACCCAAGCGGGAGCGGGTGCAAACGCGCGGACGCGTGGGTCG ] [-] EMBL BM634265 [ TTATTTCTCTCTTCTATCTGTAGCAGTGTTTTGGCTGAATTTAGGACACCGATACCCGTTCTTAACAGTACACCACGCGCACCACCGCACACCCCCACGGGTAATTCGACCCCTTATGCACCTTACTTGGTGGCTGACTTCAGGTAGGCGATCAGATCGCCACGCTCCTGCGGCTTCTTCAGACCGGCGAACACCATCTTCGTGCCGGGGATGTACTTCTTCGGGTTTTCCAGGTACTCGAACAGCGTGTCCTCGTTCCAGGTGATGCCCTTGGCCTTGTTGGCGTCGGTGTAGCTGAAGCCGGCGGCCTGGCCCGTCTTGCGGCCGAACAGTCCGTGCAGGTTCGGGCCGACCTTGTGCTTGCCACCGGCCTCGACGGTGTGGCACTGAGCGCACCG TGCACAAACAGCTTCTTGCCCTTCTCAACATCACCAGCTGGGACACCCATTGTTGTTGGTTAAAGATTTGAAGAGCGCGGTTAGGCAAGGAAAATTTTCAACCCAAGCGGGAGCGGGTGCAAACGCGCCCACGCGTCCGCCCACGGGTCCGCCCACGCGTCCGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7975#0 TCGATTAGAGAGCAAACGGGCCACGTTCGATTTGCTGAAAATTGAACTAAACCGGATCCG 60 consensus_7975#1 ------------------------------------------------------------ consensus_7975#0 ATTGTGTCCGAACCGCCGATGCCACGCGTACCATCATCCTACAGAACGATCCTCCCAAGT 120 consensus_7975#1 ------------------------------------------------------------ consensus_7975#0 CACGCAAAAACAATCGCTGGAAAGGATCGTCTGCTAGAGAACCGTGCCACCACCGTGGCA 180 consensus_7975#1 ------------------------------------------------------------ consensus_7975#0 CCACACAAGATCCGTGCGTCGAAACACACGCGCGACTGCCCCCGCTTCTCCTCCCTCCAG 240 consensus_7975#1 ------------------------------------------------------------ consensus_7975#0 TTTCCCGGCGATCGATCAAAAACCGATTTCTGTCAAACTATTTTAATTCTAGCATAAATT 300 consensus_7975#1 ------------------------------------------------------------ consensus_7975#0 AAATTAAATAGATTTACATAGACATTGTCCTAATCGTTTGGATGGGGTGGGGTGTGGAGC 360 consensus_7975#1 ------------------------------------------------------------ consensus_7975#0 CTTCCCATCTGGCGAAAGGATGCTCGCTCTCCCTCTCTCTCTCTGTGCGCTCATGCCTAT 420 consensus_7975#1 ------------------------------------------------------------ consensus_7975#0 CTCTCTATCTGTCTGTTTCCTATTTCTTACGGTTCTTTTGCTGATCTTAAACGTTCCGAA 480 consensus_7975#1 ------------------------------GGTTCTTTTGCTGATCTTAAACGTTCCGAA 30 ****************************** consensus_7975#0 TCTCAATGGAGAAGAAGCTTGAGTGAGT--GTGTGTGTGTTCTTATTTCTCTCTTCTATC 538 consensus_7975#1 TCTCAATGGAGAAGAAGCTTGAGTGAGTTGGTGTGTGTGTTCTTATTTCTCTCTTCTATC 90 **************************** ****************************** consensus_7975#0 TGTAGCAGTGTTTTGGCTGAATTTAGGACACCGATACCCGTTCTTAACAGTACACCACGC 598 consensus_7975#1 TGTAGCAGTGTTTTGGCTGAATTTAGGACACCGATACCCGTTCTTAACAGTACACCACGC 150 ************************************************************ consensus_7975#0 GCACCACCGCACACCCCCACGGGTAATTCGACCCCTTATGCACCTTACTTGGTGGCTGAC 658 consensus_7975#1 GCACCACCGCACACCCCCACGGGTAATTCAACCCCTTATGCACCTTACTTGGTGGCCGAC 210 ***************************** ************************** *** consensus_7975#0 TTCAGGTAGGCGATCAGATCGCCACGCTCCTGCGGCTTCTTCAGACCGGCGAACACCATC 718 consensus_7975#1 TTCAGGTAGGCGATCAGATCGCCACGCTCCTGAGGCTTCTTCAGACCGGCGAACACCATC 270 ******************************** *************************** consensus_7975#0 TTCGTGCCGGGGATGTACTTCTTCGGGTTTTCCAGGTACTCGAACAGCGTGTCCTCGTTC 778 consensus_7975#1 TTCGTGCCGGGGATGTACTTCTTCGGGTTTTCCAGGTACTCGAACAGCGTGTCCTCGTTC 330 ************************************************************ consensus_7975#0 CAGGTGATGCCCTTGGCCTTGTTGGCGTCGGTGTAGCTGAAGCCGGCGGCCTGGCCCGTC 838 consensus_7975#1 CAGGTGATACCCTTGGCCTTGTTGGCGTCGGTGTAGCTGAAGCCGGCGGCCTGGCCCGTC 390 ******** *************************************************** consensus_7975#0 TTGCGGCCGAACAGTCCGTGCAGGTTCGGGCCGACCTTGTGCTTGCCACCGGCCTCGACG 898 consensus_7975#1 TTGCGGCCGAACAGTCCGTGCAGGTTCGGGCCGACCTTGTGCTTGCCACCGGCCTCAACG 450 ******************************************************** *** consensus_7975#0 GTGTGGCACTGAGCGCACCGCTGCACAAACAGCTTCTTGCCCTTCTCAACATCACCAGCT 958 consensus_7975#1 GTGTGGCACTGAGCGCACCGCTGCACGAACAGCTTCTTGCCCTTCTCAACATCACCAGCT 510 ************************** ********************************* consensus_7975#0 GGGACACCCATTGTTGTTGGTTAAAGATTTGAAGAGCGCGGTTAGGCAAGGAAAATTTTC 1018 consensus_7975#1 GGGACACCCATTGTTGTTGGTTAAAGATTTGAAGAGCGCGGTTAGGCAAGGAAAATTTTC 570 ************************************************************ consensus_7975#0 AACCCAAGCGGGAGCGGGTGCAAACGCGTATAATCGCCACGGGCCCACGCGTCCGCGGAC 1078 consensus_7975#1 AACCCAAGCGGGAGCGGGTGCAAACGCGCGGACGCGT---GGGTCGACGGGTCCGCCCAC 627 **************************** * ** *** * *** ****** ** consensus_7975#0 GCGTGGGCCGACGCGTCCGCGG 1100 consensus_7975#1 GCGTCCGCGG------------ 637 **** ** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||