These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7977#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 992 fasta sequence [CCGCGGACGCGTGGGCGCGGACTCCGAGACACCCCTCTATCGTAGCACCTCCCAGCAGCGTGTGTGCCCGTGTGTGTGGTACAGTTCGGTGGATTAACGCAGCTAGAGAACAGCGCGTCTGTGTTTGTGTGATTGAGTGTGTGTCGATCTCTGTGTGTGTAGGTTGTTGCATCAGCAGACAAAAGGATATCATCGTCCGTGGAAATGTCGAGCGCACCGGTACAACGGTTTATTCAGTTCGGGGCCCACAAGGGCAAGGGCATCGCCGTCTTCACCAGCGGCGGTGACTCCCAGGGCATGAATGCGGCCGTCCGTGCGGTGGTACGCATGGGTATCTACGTCGGATGCAAGGTGTACTTCATCCGCGAAGGCTACCAGGGCATGGTGGACGGTGGTGACAACATCGTCGAGGCAAACTGGTCGTCGGTGTCGAGCATTATCCATCGCGGTGGTACCGTAATCGGTTCCGCCCGTTGTAAGGACTTCCGCGAGCGGGCCGGACGGCTGCAGGCCGCCCACAATCTCGTGTCCCGCGGCATCACCAATCTGGTCGTGATCGGTGGTGACGGTTCGCTGACCGGTGCCAACCTGTTCCGGCAGGAGTGGGGCAGCCTGCTGGACGAGCTGCTGGCCAGCAATCGGATCACGCAGGACCAGCGCATCAAGTACAAGAGCCTGCACATTGCCGGCATGGTCGGTTCGATCGATAACGATTTCTGCGGCACGGACATGACCATCGGTACGGATTCGGCGCTGCACCGTATCATCGAGGCGATCGACGCGATCGTCAGTACGGCGTACTCGCACCAGCGTACCTTCATCATGGAAGGTAATGGGTCGTCACTGTGGCTATCTAGCGGTCGTTGCCGGCGTCATTTCTGAGGCCGACTACGTCTTCATTCCCGAGTCTCCGCCGCCCCGCGACTGGGAGACCAAAATCTGCGACAAACTCGAACAGGAACGTTCGGCTGGCCAGCGTCTGAACATTATCA] [+] EMBL BM623819 [CCGCGGACGCGTGGGCGCGGACTCCGAGACACCCCTCTATCGTAGCACCTCCCAGCAGCGTGTGTGCCCGTGTGTGTGGTACAGTTCGGTGGATTAACGCAGCTAGAGAACAGCGCGTCTGTGTTTGTGTGATTGAGTGTGTGTCGATCTCTGTGTGTGTAGGTTGTTGCATCAGCAGACAAAAGGATATCATCGTCCGTGGAAATGTCGAGCGCACCGGTACAACGGTTTATTCAGTTCGGGGCCCACAAGGGCAAGGGCATCGCCGTCTTCACCAGCGGCGGTGACTCCCAGGGCATGAATGCGGCCGTCCGTGCGGTGGTACGCATGGGTATCTACGTCGGATGCAAGGTGTACTTCATCCGCGAAGGCTACCAGGGCATGGTGGACGGTGGTGACAACATCGTCGAGGCAAACTGGTCGTCGGTGTCGAGCATTATCCATCGCGGTGGTACCGTAATCGGTTCCGCCCGTTGTAAGGACTTCCGCGAGCGGGCCGGACGGCTGCAGGCCGCCCACAATCTCGTGTCCCGCGGCATCACCAATCTGGTCGTGATCGGTGGTGACGGTTCGCTGACCGGTGCCAACCTGTTCCGGCAGGAGTGGGGCAGCCTGCTGGACGAGCTGCTGGCCAGCAATCGGA ] [+] EMBL BX625738 [ AGTGTGTGTCGATCTCTGTGTGTGTAGGTTGTTGCATCAGCAGACAAAAGGATATCATCGTCCGTGGAAATGTCGAGCGCACCGGTACAACGGTTTATTCAGTTCGGGGCCCACAAGGGCAAGGGCATCGCCGTCTTCACCAGCGGCGGTGACTCCCAGGGCATGAATGCGGCCGTCCGTGCGGTGGTACGCATGGGTATCTACGTCGGATGCAAGGTGTACTTCATCCGCGAAGGCTACCAGGGCATGGTGGACGGTGGTGACAACATCGTCGAGGCAAACTGGTCGTCGGTGTCGAGCATTATCCATCGCGGTGGTACCGTAATCGGTTCCGCCCGTTGTAAGGACTTCCGCGAGCGGGCCGGACGGCTGCAGGCCGCCCACAATCTCGTGTCCCGCGGCATCACCAATCTGGTCGTGATCGGTGGTGACGGTTCGCTGACCGGTGCCAACCTGTTCCGGCAGGAGTGGGGCAGCCTGCTGGACGAGCTGCTGGCCAGCAATCGGATCACGCAGGACCAGCGCATCAAGTACAAGAGCCTGCACATTGCCGGCATGGTCGGTTCGATCGATAACGATTTCTGCGGCACGGACATGACCATCGGTACGGATTCGGCGCTGCACCGTATCATCGAGGCGATCGACGCGATCGTCAGTACGGCGTACTCGCACCAGCGTACCTTCATCATGGAAGGTAATGGGTCGTCACTGTGGCTATCTAGCGGTCGTTGCCGGCG ] [+] EMBL BM637340 [ ccgATGAATGCGGCCGTCCGTGCGGTGGTACGCATGGGTATCTACGTCGGATGCAAGGTGTACTTCATCCGCGAAGGCTACCAGGGCATGGTGGACGGTGGTGACAACATCGTCGAGGCAAACTGGTCGTCGGTGTCGAGCATTATCCATCGCGGTGGTACCGTAATCGGTTCCGCCCGTTGTAAGGACTTCCGCGAGCGGGCCGGACGGCTGCAGGCCGCCCACAATCTCGTGTCCCGCGGCATCACCAATCTGGTCGTGATCGGTGGTGACGGTTCGCTGACCGGTGCCAACCTGTTCCGGCAGGAGTGGGGCAGCCTGCTGGACGAGCTGCTGGCCAGCAATCGGATCACGCAGGACCAGCGCATCAAGTACAAGAGCCTGCACATTGCCGGCATGGTCGGTTCGATCGATAACGATTTCTGCGGCACGGACATGACCATCGGTACGGATTCGGCGCTGCACCGTATCATCGAGGCGATCGACGCGATCGTCAGTACGGCGTACTCGCACCAGCGTACCTTCATCATGG AGGTGATGGGTCGTCACTGTGGCTATCTAGCGGTCGTTGCCGGCGTCATTTCTGAGGCCGACTACGTCTTCATTCCCGAGTCTCCGCCGCCCCGCGACTGGGAGACCAAAATCTGCGACAAACTCGAACAGGAACGTTCGGCTGGCCAGCGTCTGAACATTATCA] consensusID : consensus_7977#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 784 fasta sequence [CCGGTCACCTTGAGATGTCACGGATCACCTTTGGGAAGCCCGTCCACTAGCGAGAAAAAAGGAACCGCCGTTTGTGTTCGCCTCTTGCAGTTGCGTTTCTCTCACAACCGAGTCGGTGGCTGATTCGCGGACTCCGAGACACCCCTCTATCGTAGCACCTCCCAGCAGCGTGT----CCGTGTGTGTGGTACAGTTCGGTGGATTAACGCAGCTAGAGAACAGCGCGTC------TGTGTGATTGA--GTGTGTCGATCTCTGAGTGTGTGTGTGTAGGTTGTTGCATCAGCAGACAAAAGGATATCATCGTCCGTGGAAATGTCGAGCGCACCGGTACAACGGTTTATTCAGTTCGGGGCCCACAAGGGCAAGGGCATCGCCGTCTTCACCAGCGGCGGTGACTCCCAGGGCATGAATGCGGCCGTCCGTGCGGTGGTACGCATGGGTATCTACGTCGGATGCAAGGTGTACTTCATCCGCGAAGGCTACCAGGGCATGGTGGACGGTGGTGACAACATCGTCGAGGCAAACT-GGTCGTCGGTGTCGAGCATTATCCATCGCGGTGGTACCGTAATCGGTTCCGCCCGTTGTAAGGACTTCCGCGAGCGGGCCGGACGGCTGCAGGCCGCCCACAATCTCGTGTCCCGCGGCATCACCAA-TCTGGTCGTGATC-GGTGGTGACGGTTCGCTGACCGGTGCCAACCTGTTCCCGGCAGGAGTGGGGGCAGCCTGCTGGACGAGCTGCTGGCCAGCAATCGGATCACGCAGGACCAGCGCATCAAGTACAAGAGCCTG] [+] EMBL BM591091 [CCGGTCACCTTGAGATGTCACGGATCACCTTTGGGAAGCCCGTCCACTAGCGAGAAAAAAGGAACCGCCGTTTGTGTTCGCCTCTTGCAGTTGCGTTTCTCTCACAACCGAGTCGGTGGCTGATTCGCGGACTCCGAGACACCCCTCTATCGTAGCACCTCCCAGCAGCGTGT CCGTGTGTGTGGTACAGTTCGGTGGATTAACGCAGCTAGAGAACAGCGCGTC TGTGTGATTGA GTGTGTCGATCTCTGAGTGTGTGTGTGTAGGTTGTTGCATCAGCAGACAAAAGGATATCATCGTCCGTGGAAATGTCGAGCGCACCGGTACAACGGTTTATTCAGTTCGGGGCCCACAAGGGCAAGGGCATCGCCGTCTTCACCAGCGGCGGTGACTCCCAGGGCATGAATGCGGCCGTCCGTGCGGTGGTACGCATGGGTATCTACGTCGGATGCAAGGTGTACTTCATCCGCGAAGGCTACCAGGGCATGGTGGACGGTGGTGACAACATCGTCGAGGCAAACT GGTCGTCGGTGTCGAGCATTATCCATCGCGGTGGTACCGTAATCGGTTCCGCCCGTTGTAAGGACTTCCGCGAGCGGGCCGGACGGCTGCAGGCCGCCCACAATCTCGTGTCCCGCGGCATCACCAA TCTGGTCGTGATC GGTGGTGACGGTTCGCTGACCG ] [+] EMBL BM590152 [ ccgAAAAAGGAACCGCCGTTTGTGTTCGCCTCTTGCAGTTGCGTTTCTCTCACAACAGAGTCGGTGGCTGATTCGCGGACTCCGAGACACCCCTCTATCGTAGCACCTCCCAGCAGCGTGTGTGCCCGTGTGTGTGGTACAGTTCGGTGGATTAACGCAGCTAGAGAACAGCGCGTCTGTGTTTGTGTGATTGAGTGTGTGTCGATCTC TGTGTGTGTAGGTTGTTGCATCAGCAGACAAAAGGATATCATCGTCCGTGGAAATGTCGAGCGCACCGGTACAACGGTTTATTCAGTTCGGGGCCCACAAGGGCAAGGGCATCGCCGTCTTCACCAGCGGCGGTGACTCCCAGGGCATGAATGCGGCCGTCCGTGCGGTGGTACGCATGGGTATCTACGTCGGATGCAAGGTGTACTTCATCCGCGAAGGCTACCAGGGCATGGTGGACGGTGGTGACAACATCGTCGAGGCAAACT GGTCGTCGGTGTCGAGCATTATCCATCGCGGTGGTACCGTAATC ] [+] EMBL BM630427 [ ccgCGCCTCTTGCAGTTGCGTTTCTCTCACAACCGAGTCGGTGGCTGATTCGCGGACTCCGAGACACCCCTCTATCGTAGCACCTCCCAGCAGCGTGT CCGTGTGTGTGGTACAGTTCGGTGGATTAACGCAGCTAGAGAACAGCGCGTC TGTGTGATTGA GTGTGTCGATCTCTGAGTGTGTGTGTGTAGGTTGTTGCATCAGCAGACAAAAGGATATCATCGTCCGTGGAAATGTCGAGCGCACCGGTACAACGGTTTATTCAGTTCGGGGCCCACAAGGGCAAGGGCATCGCCGTCTTCACCAGCGGCGGTGACTCCCAGGGCATGAATGCGGCCGTCCGTGCGGTGGTACGCATGGGTATCTACGTCGGATGCAAGGTGTACTTCATCCGCGAAGGCTACCAGGGCATGGTGGACGGTGGTGACAACATCGTCGAGGCAAACT GGTCGTCGGTGTCGAGCATTATCCATCGCGGTGGTACCGTAATCGGTTCCGCCCGTTGTAAGGACTTCCGCGAGCGGGCCGGACGGCTGCAGGCCGCCCACAATCTCGTGTCCCGCGGC ] [+] EMBL BM615036 [ ccgTGCGTTTCTCTCACAACCGAGTCGGTGGCTGATTCGCGGACTCCGAGACACCCCTCTATCGTAGCACCTCCCAGCAGCGTGT CCGTGTGTGTGGTACAGTTCGGTGGATTAACGCAGCTAGAGAACAGCGCGTC TGTGTGATTGA GTGTGTCGATCTCTGAGTGTGTGTGTGTAGGTTGTTGCATCAGCAGACAAAAGGATATCATCGTCCGTGGAAATGTCGAGCGCACCGGTACAACGGTTTATTCAGTTCGGGGCCCACAAGGGCAAGGGCATCGCCGTCTTCACCAGCGGCGGTGACTCCCAGGGCATGAATGCGGCCGTCCGTGCGGTGGTACGCATGGGTATCTACGTCGGATGCAAGGTGTACTTCATCCGCGAAGGCTACCAGGGCATGGTGGACGGTGGTGACAACATCGTCGAGGCAAACTGGGTCGTCGGTGTCGAGCATTATCCATCGCGGTGGTACCGTAATCGGTTCCGCCCGTTGTAAGGACTTCCGCGAGCGGGCCGGACGGCTGCAGGCCGCCCACAATCTCGTGTCCCGCGGCATCACCAATTCTGGTCGTGATCGGGTGGTGACGGTTCGCTGACCGGTGCCAACCTGTTCCCGGCAGGAGTGGGGGCAGCCTGCTGGACGAGCTGCTGGCCAGCAATCGGA ] [+] EMBL BM655511 [ ccgCTCTCACACCCGAGTCGGTGGCTGATTCGCGGACTCCGAGACACCCCTCTATCGTAGCACCTCCCAGCAGCGTGT CCGTGTGTGTGGTACAGTTCGGTGGATTAACGCAGCTAGAGAACAGCGCGTC TGTGTGATTGA GTGTGTCGATCTCTGAGTGTGTGTGTGTAGGTTGTTGCATCAGCAGACAAAAGGATATCATCGTCCGTGGAAATGTCGAGCGCACCGGTACAACGGTTTATTCAGTTCGGGGCCCACAAGGGCAAGGGCATCGCCGTCTTCACCAGCGGCGGTGACTCCCAGGGCATGAATGCGGCCGTCCGTGCGGTGGTACGCATGGGTATCTACGTCGGATGCAAGGTGTACTTCATCCGCGAAGGCTACCAGGGCATGGTGGACGGTGGTGACAACATCGTCGAGGCAAACT GGTCGTCGGTGTCGAGCATTATCCATCGCGGTGGTACCGTAATCGGTTCCGCCCGTTGTAAGGACTTCCGCGAGCGGGCCGGACGGCTGCAGGCCGCCCACAATCTCGTGTCCCGCGGCATCACCAA TCTGGTCGTGATC GGTGGTGACGGTTCGCTGACCGGTGCCAACCTGTT CCGGCAGGAGT GGGGCAGCCTGCTGGACGAGCTGCTGGCCAGCAATCGGATCACGCAGGACCAGCGCATCAAGTACAAGAGCCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7977#0 ------------------------------------------------------------ consensus_7977#1 CCGGTCACCTTGAGATGTCACGGATCACCTTTGGGAAGCCCGTCCACTAGCGAGAAAAAA 60 consensus_7977#0 -----------------------------------------------CCG---CGGACGC 10 consensus_7977#1 GGAACCGCCGTTTGTGTTCGCCTCTTGCAGTTGCGTTTCTCTCACAACCGAGTCGGTGGC 120 *** *** ** consensus_7977#0 GTGGGCGCGGACTCCGAGACACCCCTCTATCGTAGCACCTCCCAGCAGCGTGTGTGCCCG 70 consensus_7977#1 TGATTCGCGGACTCCGAGACACCCCTCTATCGTAGCACCTCCCAGCAGCGTGT----CCG 176 ************************************************ *** consensus_7977#0 TGTGTGTGGTACAGTTCGGTGGATTAACGCAGCTAGAGAACAGCGCGTCTGTGTTTGTGT 130 consensus_7977#1 TGTGTGTGGTACAGTTCGGTGGATTAACGCAGCTAGAGAACAGCGCGTCTGTGT--GATT 234 ****************************************************** * * consensus_7977#0 GATTGAGTGTGTGTCGATCTCTGTGTGTGTAGGTTGTTGCATCAGCAGACAAAAGGATAT 190 consensus_7977#1 GAGTGTGTCGATCTCTGAGTGTGTGTGTGTAGGTTGTTGCATCAGCAGACAAAAGGATAT 294 ** ** ** * ** * *************************************** consensus_7977#0 CATCGTCCGTGGAAATGTCGAGCGCACCGGTACAACGGTTTATTCAGTTCGGGGCCCACA 250 consensus_7977#1 CATCGTCCGTGGAAATGTCGAGCGCACCGGTACAACGGTTTATTCAGTTCGGGGCCCACA 354 ************************************************************ consensus_7977#0 AGGGCAAGGGCATCGCCGTCTTCACCAGCGGCGGTGACTCCCAGGGCATGAATGCGGCCG 310 consensus_7977#1 AGGGCAAGGGCATCGCCGTCTTCACCAGCGGCGGTGACTCCCAGGGCATGAATGCGGCCG 414 ************************************************************ consensus_7977#0 TCCGTGCGGTGGTACGCATGGGTATCTACGTCGGATGCAAGGTGTACTTCATCCGCGAAG 370 consensus_7977#1 TCCGTGCGGTGGTACGCATGGGTATCTACGTCGGATGCAAGGTGTACTTCATCCGCGAAG 474 ************************************************************ consensus_7977#0 GCTACCAGGGCATGGTGGACGGTGGTGACAACATCGTCGAGGCAAACTGGTCGTCGGTGT 430 consensus_7977#1 GCTACCAGGGCATGGTGGACGGTGGTGACAACATCGTCGAGGCAAACTGGTCGTCGGTGT 534 ************************************************************ consensus_7977#0 CGAGCATTATCCATCGCGGTGGTACCGTAATCGGTTCCGCCCGTTGTAAGGACTTCCGCG 490 consensus_7977#1 CGAGCATTATCCATCGCGGTGGTACCGTAATCGGTTCCGCCCGTTGTAAGGACTTCCGCG 594 ************************************************************ consensus_7977#0 AGCGGGCCGGACGGCTGCAGGCCGCCCACAATCTCGTGTCCCGCGGCATCACCAATCTGG 550 consensus_7977#1 AGCGGGCCGGACGGCTGCAGGCCGCCCACAATCTCGTGTCCCGCGGCATCACCAATCTGG 654 ************************************************************ consensus_7977#0 TCGTGATCGGTGGTGACGGTTCGCTGACCGGTGCCAACCTGTTCC-GGCAGGAGTGGGG- 608 consensus_7977#1 TCGTGATCGGTGGTGACGGTTCGCTGACCGGTGCCAACCTGTTCCCGGCAGGAGTGGGGG 714 ********************************************* ************* consensus_7977#0 CAGCCTGCTGGACGAGCTGCTGGCCAGCAATCGGATCACGCAGGACCAGCGCATCAAGTA 668 consensus_7977#1 CAGCCTGCTGGACGAGCTGCTGGCCAGCAATCGGATCACGCAGGACCAGCGCATCAAGTA 774 ************************************************************ consensus_7977#0 CAAGAGCCTGCACATTGCCGGCATGGTCGGTTCGATCGATAACGATTTCTGCGGCACGGA 728 consensus_7977#1 CAAGAGCCTG-------------------------------------------------- 784 ********** consensus_7977#0 CATGACCATCGGTACGGATTCGGCGCTGCACCGTATCATCGAGGCGATCGACGCGATCGT 788 consensus_7977#1 ------------------------------------------------------------ consensus_7977#0 CAGTACGGCGTACTCGCACCAGCGTACCTTCATCATGGAAGGTAATGGGTCGTCACTGTG 848 consensus_7977#1 ------------------------------------------------------------ consensus_7977#0 GCTATCTAGCGGTCGTTGCCGGCGTCATTTCTGAGGCCGACTACGTCTTCATTCCCGAGT 908 consensus_7977#1 ------------------------------------------------------------ consensus_7977#0 CTCCGCCGCCCCGCGACTGGGAGACCAAAATCTGCGACAAACTCGAACAGGAACGTTCGG 968 consensus_7977#1 ------------------------------------------------------------ consensus_7977#0 CTGGCCAGCGTCTGAACATTATCA 992 consensus_7977#1 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||