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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8002#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1132 fasta sequence
[TTTTGTGACTAGTTTAGTGCTGTTTATTTTCCTTCGTTATATCCATTCTGCATGCCCATCATGGATTGAAGCCTCGATTGGACTGTGCCCCCAAATGTAGAACTGATTATCCTGCTATCCGTATTCAATGCGTCACTAATAGTCAAACCCATTAGTGGTACAGGCAGGCTTGACCGACAACGGTTGCTACATCAAAGTAAATCCATCTTGTCCATCTTACAACTTAAATCCGGAGTGTATCGCAACGACACCAAAGGTTAAATTTTCATATTCAACACATTTGAAGCCAGCGTTCTGAATCATTGCTTTAAATTCATTTTGCTGCGGAAACTTTCGGATGCTCTCTACCAAGTACTGGTACGGCTGCCACTGATTAGCTAGTATTTGTCCCATCGGTGGAATCACTTGGAAGGAATACTGATCGTAAACCCATTTAAGATATTCATTGTTCACATGACTGAATTCTAGGCACATAAAACGTCCTCCCGG-TTTCAGCACGCGGTGAGCTTCCGAAAGTACTTTGTCAATATGCGTGCAATTTCTAATCCCAAATGCGATCGTGTACACGCTGAATGATGAATCCTCGAAGGGCAGTTTTTCGGCATCGGCACACACCCATTCAATTGTGTCACCGGCTGTAGGTAAGTTCAATTTTTCCCATCGTTGTTGACCCACATCTAGCATATTTTGATTGATATCACAAACAGTAACATGACTAGGCTTTCGATCTGGTGTAGTCTGCTTTTGCAGATATTTCATGTATCGGAACGCTATATCGCCAGTGCCACCAGCCATGTCCAGCAGTCGTATTCCATTTCCCACCGGCGATAATCGTTCCATGAAAATATCTTTCCATACACGATGAATTCCCATCGACATAGCGTCATTCATCAAATCATAGGATGCCGCGACCTCCTCGAACACTTTGTGAACCTTTTTCCATTTGTCGCTCTCTTTTACCGTTTGAAAACCAAAGTGTGTATCCGAATCGTGTTGCGTTGCGCTTTGGGTAACATTTTCCCTTGCATTGCTGGAAAAACGCGCAAGCGGAAGTCTGTGTATCAATAGAGAGGTTCTTCGAAGAGGCAACATTGCGTAGGTTTTGATTTGGGTACTGCGAAATCCCAGTAGC]
[+] EMBL CNS09F7Z [TTTTGTGACTAGTTTAGTGCTGTTTATTTTCCTTCGTTATATCCATTCTGCATGCCCATCATGGATTGAAGCCTCGATTGGACTGTGCCCCCAAATGTAGAACTGATTATCCTGCTATCCGTATTCAATGCGTCACTAATAGTCAAACCCATTAGTGGTACAGGCAGGCTTGACCGACAACGGTTGCTACATCAAAGTAAATCCATCTTGTCCATCTTACAACTTAAATCCGGAGTGTATCGCAACGACACCAAAGGTTAAATTTTCATATTCAACACATTTGAAGCCAGCGTTCTGAATCATTGCTTTAAATTCATTTTGCTGCGGAAACTTTCGGATGCTCTCTACCAAGTACTGGTACGGCTGCCACTGATTAGCTAGTATTTGTCCCATCGGTGGAATCACTTGGAAGGAATACTGATCGTAAACCCATTTAAGATATTCATTGTTCACATGACTGAATTCTAGGCACATAAAACGTCCTCCCGG TTTCAGCACGCGGTGAGCTTCCGAAAGTACTTTGTCAATATGCGTGCAATTTCTAATCCCAAATGCGATCGTGTACACGCTGAATGATGAATCCTCGAAGGGCAGTTTTTCGGCATCGGCACAAACCCATTCAATTGTGTCACCGGCTGTAGGTAAGTTCAATTTTTCCCATCGTTGTTGACCCACATCTAGCATATTTTGATTGATATCACAAACAGTAACATGACTAGGCTTTCGATCTGGTGTAGTCTGCTTTTGCAGATATTTCATGTATCGGAACGCTATATCGCCAGTGCCACCAGCCATGTCCAGCAGTCGTATTCCATTTCCCACCGGCGATAATCGTTCCATGAAAATATCTTTCCATACACGATGAATTCCCATCGACATAGCGTCATTCATCAAATCATAGGATGCCGCGACCTCCTCGAACACTTTGTGAACCTTTTTCCATTTGTCGCTCTCTTTTACCG ]
[-] EMBL BX615023 [ TAGTTTAGTGCTGTTTATTTTCCTTCGTTATATCCATTCTGCATGCCCATCATGGATTGAAGCCTCGATTGGACTGTGCCCCCAAATGTAGAACTGATTATCCTGCTATCCGTATTCAATGCGTCACTAATAGTCAAACCCATTAGTGGTACAGGCAGGCTTGACCGACAACGGTTGCTACATCAAAGTAAATCCATCTTGTCCATCTTACAACTTAAATCCGGAGTGTATCGCAACGACACCAAAGGTTAAATTTTCATATTCAACACATTTGAAGCCAGCGTTCTGAATCATTGCTTTAAATTCATTTTGCTGCGGAAACTTTCGGATGCTCTCTACCAAGTACTGGTACGGCTGCCACTGATTAGCTAGTATTTGTCCCATCGGTGGAATCACTTGGAAGGAATACTGATCGTAAACCCATTTAAGATATTCATTGTTCACATGACTGAATTCTAGGCACATAAAACGTCCTCCCGG TTTCAGCACGCGGTGAGCTTCCGAAAGTACTTTGTCAATATGCGTGCAATTTCTAATCCCAAATGCGATCGTGTACACGCTGAATGATGAATCCTCGAAGGGCAGTTTTTCGGCATCGGCACACACCCATTCAATTGTGTCACCGGCTGTAGGTAAGATCAATTTTTCCCATCGTTGTTGACCC ]
[-] EMBL CNS09F7Y [ TGCTACATAAAAGTAAATCCATCTTGTCCATCTTACAACTTAATTCCGGAGTGTATCGCAACGACACCAAAGGTTAAATTTTCATATTCAACACATTTGAAGCCAGCGTTCTGAATCATTGCTTTAAATTCATTTTGCTGCGGAAACTTTCGGATGCTCTCTACCAAGTACTGGTACGGCTGCCACTGATTAGCTAGTATTTGTCCCATCGGTGGAATCACTTGGAAGGAATACTGATCGTAAACCCATTTAAGATATTCATTGTTCACATGACTGAATTCTAGGCACATAAAACGTCCTCCCGG TTTCAGCACGCGGTGAGCTTCCGAAAGTACTTTGTCAATATGCGTGCAATTTCTAATCCCAAATGCGATCGTGTACACGCTGAATGATGAATCCTCGAAGGGCAGTTTTTCGGCATCGGCACACACCCATTCAATTGTGTCACCGGCTGTAGGTAAGTTCAATTTTTCCCATCGTTGTTGACCCACATCTAGCATATTTTGATTGATATCACAAACAGTAACATGACTAGGCTTTCGATCTGGTGTAGTCTGCTTTTGCAGATATTTCATGTATCGGAACGCTATATCGCCAGTGCCACCAGCCATGTCCAGCAGTCGTATTCCATTTCCCACCGGCGATAATCGTTCCATGAAAATATCTTTCCATACACGATGAATTCCCATCGACATAGCGTCATTCATCAAATCATAGGATGCCGCGACCTCCTCGAACACTTTGTGAACCTTTTTCCATTTGTCGCTCTCTTTTACCGTTTGAAAACCAAAGTGTGTATCCGAATCGTGTTGCGTTGCGCTTTGGGTAACATTTTCCCTTGCATTGCTGGAAAAACGCGCAAGCGGAAGTCTGTGTATCAATAGAGAGGTTCTTCGAAGAGGCAACATTGCGTAGGTTTTGATTTGGGTACTGCGAAATCCCAGTAGC]
[+] EMBL CNS09QUO [ CTGAATCATTGCTTTAAATTCATTTTGCTGCGGAAACTTTCGGATGCTCTCTACCAAGTACTGGTACGGCTGCCACTGATTAGCTAGTATTTGTCCCATCGGTGGAATCACTTGGAAGGAATACTGATCGTAAACCCATTTAAGATATTCATTGTTCACATGACTGAATTCTAGGCACATAAAACGTCCTCCCGG TTTCAGCACGCGGTGAGCTTCCGAAAGTACTTTGTCAATATGCGTGCAATTTCTAATCCCAAATGCGATCGTGTACACGCTGAATGATGAATCCTCGAAGGGCAGTTTTTCGGCATCGGCACACACCCATTCAATTGTGTCACCGGCTGTAGGTAAGTTCAATTTTTCCCATCGTTGTTGACCCACATCTAGCATATTTTGATTGATATCACAAACAGTAACATGACTAGGCTTTCGATCTGGTGTAGTCTGCTTTTGCAGATATTTCATGTATCGGAACGCTATATCGCCAGTTCCACCAGCCATGTCCAGCAGTTGTATTCCATTTCCCACCGGCGATAATCGTTCCATGAAAATATCTTTCCATACACGATGGATTCCCATCGACATAGCGTCATTCATCAAATCATAGGATGCCGCGACCTCCTCGAACACTTTGTG ]
[-] EMBL CNS09QUN [ TGCTTTAAATTCATTTTTCTGCTGAAACTTTCGGATGCTCTCTACCAAGTACTGGTACGGCTGCCACTGATTAGCTAGTATTTGTCCCATCGGTGGAATCACTTGGAAGGAATACTGATCGTAAACCCATTTAAGATATTCATTGTTCACATGACTGAATTCTAGGCACATAAAACGTCCTCCCGG TTTCAGCACGCGGTGAGCTTCCGAAAGTACTTTGTCAATATGCGTGCAATTTCTAATCCCAAATGCGATCGTGTACACGCTGAATGATGAATCCTCGAAGGGCAGTTTTTCGGCATCGGCACACACCCATTCAATTGTGTCACCGGCTGTAGGTAAGTTCAATTTTTCCCATCGTTGTTGACCCACATCTAGCATATTTTGATTGATATCACAAACAGTAACATGACTAGGCTTTCGATCTAATGTAGTCTGCTTTTGCAGATATTTCATGTATCGGAACGCTATATCGCCAGTGCCACCAGCCATGTCCAGCAGTCGTATTCCATTTCCCACCGGCGATAATCGTTCCATGAAAATATCTTTCCATACACGATGGATTCCCATCGACATAGCGTCATTCATCAAATCATAGGATGCCGCGACCTCCTCGAACACTTTGTGAACCTTTTTCCATTTGTCGCTCTCTTTTACCGTTTGAAAACCAAAGTGTGTATCCGAATCGTGTTGCGTTGCGCTTTGGGTAACATTTTCCCTTGCATTGCTGGAAAAACGCGCAAGCG ]
[-] EMBL BM622085 [ GAATTCTAGGCACATAAAACGTCCTCCCGGTTTTCAGCACGCGGTGAGCTTCCGAAAGTACTTTGTCAATATGCGTGCAATTTCTAATCCCAAATGCGATCGTGTACACGCTGAATGATGAATCCTCGAAGGGCAGTTTTTCGGCATCGGCACACACCCATTCAATTGTGTCACCGGCTGTAGGTAAGTTCAATTTTTCCCATCGTTGTTGGCCCACATCTAGCATATTTTGATTGATATCACAAACAGTAACATGACTAGGCTTTCGATCTGGTGTAGTCTGCTTTTGCAGATATTTCATGTATCGGAACGCTATATCGCCAGTGCCACCAGCCATGTCCAGCAGTCGTATTCCATTTCCCACCGGCGATAATCGTTCCATGAAAATATCTTTCCATACACGATGAATTCCCATCGACATAGCGTCATTCATCAAATCATAGGATGCCGCGACCTCCTCGAACACTTTGTGAACCTTTTTCCATTTGTCGCTCTCTTTTACCGTTTGAAAACCAAAGTGTGTATCCGAATCGTGTTGCGTTGCGCTTTGGGTAACATTTTCCCTTGCATTGCTGGAAAAACGCGCAAGCGGAAGTCTGTGTATCAATAGAGAGGTTCTTCGAAGAGGCAACATTGCGTAGGTTTTGAcgg ]
[-] EMBL BM629763 [ TCGGCACACACCCATTCAATTGTGTCACCGGCTGTAGGTAAGTTCAATTTTTCCCATCGTTGTTGGCCCACATCTAGCATATTTTGATTGATATCACAAACAGTAACATGACTAGGCTTTCGATCTGGTGTAGTCTGCTTTTGCAGATATTTCATGTATCGGAACGCTATATCGCCAGTGCCACCAGCCATGTCCAGCAGTCGTATTCCATTTCCCACCGGCGATAATCGTTCCATGAAAATATCTTTCCATACACGATGAATTCCCATCGACATAGCGTCATTCATCAAATCATAGGATGCCGCGACCTCCTCGAACACTTTGTGAACCTTTTTCCATTTGTCGCTCTCTTTTACCGTTTGAAAACCAAAGTGTGTATCCGAATCGTGTTGCGTTGCGCTTTGGGTAACATTTTCCCTTGCATTGCTGGAAAAACGCGCAAGCGGAAGTCTGTGTATCAATAGAGAGGTTCTTCGAAGAGGCAACATTGCGcgg ]
consensusID : consensus_8002#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 552 fasta sequence
[GCCACGTTTTGTCGGCATCGGCACACATCCCANTTCAATTGTGTCACCCGGCCTGTAGNTAAGTTCAATTTTTTCCCACTCGTTGTTGACCCCACATCTTAGCATNATNTCTTGACTTGTACTATCACCACAACACGTAACATGACTAGGCCTTTCGATCTGGTGTAGCTCTGCTTTTTCGCAGATATNTTCATGTATCGGAACGCTATATCGCCAGTGCCACCAGCCATGTCCAGCAGTCGTATTCCATGTTCCCACCGGCGATAATCGTGTCCATGAAAATATCTTTCCATACACGATGAATTCCCATCGACATAGCGTCATTCATCAAATCATAGGATGCCGCGACCTCCTCGATACACTTTGTGAACCTTTTTCCATTTGTCGCTCTCTTTTACCGTTTGAAACCAAAGTGTGTATCCGAATCGTGTTGCGTTGCGCTTTGGGTAACATTTTCCCTTGCATTGCTGGAAAAACGCGCAAGCGGAAGTCTGTGTATCAATAGAGAGGGTTCTTCGAAGAGGCAACATNTACACTCNTGGCGATTCTGGC]
[-] EMBL BX466247 [GCCACGTTTTGTCGGCATCGGCACACATCCCANTTCAATTGTGTCACCCGGCCTGTAGNTAAGTTCAATTTTTTCCCACTCGTTGTTGACCCCACATCTTAGCATNATNTCTTGACTTGTACTATCACCACAACACGTAACATGACTAGGCCTTTCGATCTGGTGTAGCTCTGCTTTTTCGCAGATATNTTCATGTATCGGAACGCTATATCGCCAGTGCCACCAGCCATGTCCAGCAGTCGTATTCCATGTTCCCACCGGCGATAATCGTGTCCATGAAAATATCTTTCCATACACGATGAATTCCCATCGACATAGCGTCATTCATCAAATCATAGGATGCCGCGACCTCCTCGATACACTTTGTGAACCTTTTTCCATTTGTCGCTCTCTTTTACCGTTTGAAACCAAAGTGTGTATCCGAATCGTGTTGCGTTGCGCTTTGGGTAACATTTTCCCTTGCATTGCTGGAAAAACGCGCAAGCGGAAGTCTGTGTATCAATAGAGAGGGTTCTTCGAAGAGGCAACATNTACACTCNTGGCGATTCTGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8002#0 TTTTGTGACTAGTTTAGTGCTGTTTATTTTCCTTCGTTATATCCATTCTGCATGCCCATC 60
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 ATGGATTGAAGCCTCGATTGGACTGTGCCCCCAAATGTAGAACTGATTATCCTGCTATCC 120
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 GTATTCAATGCGTCACTAATAGTCAAACCCATTAGTGGTACAGGCAGGCTTGACCGACAA 180
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 CGGTTGCTACATCAAAGTAAATCCATCTTGTCCATCTTACAACTTAAATCCGGAGTGTAT 240
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 CGCAACGACACCAAAGGTTAAATTTTCATATTCAACACATTTGAAGCCAGCGTTCTGAAT 300
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 CATTGCTTTAAATTCATTTTGCTGCGGAAACTTTCGGATGCTCTCTACCAAGTACTGGTA 360
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 CGGCTGCCACTGATTAGCTAGTATTTGTCCCATCGGTGGAATCACTTGGAAGGAATACTG 420
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 ATCGTAAACCCATTTAAGATATTCATTGTTCACATGACTGAATTCTAGGCACATAAAACG 480
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 TCCTCCCGGTTTCAGCACGCGGTGAGCTTCCGAAAGTACTTTGTCAATATGCGTGCAATT 540
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 TCTAATCCCAAATGCGATCGTGTACACGCTGAATGATGAATCCTCGAAGGGCAGTTTTTC 600
consensus_8002#1 -----------------------------------------------GCCACGTTTTGTC 13
* *** **
consensus_8002#0 GGCATCGGCACACACCC--ATTCAATTGTGTCACCGG--CTGTAGGTAAGTTCAATTTTT 656
consensus_8002#1 GGCATCGGCACACATCCCANTTCAATTGTGTCACCCGGCCTGTAGNTAAGTTCAATTTTT 73
************** ** *************** * ****** **************
consensus_8002#0 CCCA--TCGTTGTTGACCC-ACATCT----AGCATATTTTGATTGATATCACAAACA--- 706
consensus_8002#1 TCCCACTCGTTGTTGACCCCACATCTTAGCATNATNTCTTGACTTGTACTATCACCACAA 133
** ************* ****** * ** * **** * ** * * **
consensus_8002#0 ---GTAACATGACTAGGC-TTTCGATCTGGTGTAG-TCTGCTTTT--GCAGATATTT-CA 758
consensus_8002#1 CACGTAACATGACTAGGCCTTTCGATCTGGTGTAGCTCTGCTTTTTCGCAGATATNTTCA 193
*************** **************** ********* ******** * **
consensus_8002#0 TGTATCGGAACGCTATATCGCCAGTGCCACCAGCCATGTCCAGCAGTCGTATTCCAT-TT 817
consensus_8002#1 TGTATCGGAACGCTATATCGCCAGTGCCACCAGCCATGTCCAGCAGTCGTATTCCATGTT 253
********************************************************* **
consensus_8002#0 CCCACCGGCGATAATCGT-TCCATGAAAATATCTTTCCATACACGATGAATTCCCATCGA 876
consensus_8002#1 CCCACCGGCGATAATCGTGTCCATGAAAATATCTTTCCATACACGATGAATTCCCATCGA 313
****************** *****************************************
consensus_8002#0 CATAGCGTCATTCATCAAATCATAGGATGCCGCGACCTCCTCGA-ACACTTTGTGAACCT 935
consensus_8002#1 CATAGCGTCATTCATCAAATCATAGGATGCCGCGACCTCCTCGATACACTTTGTGAACCT 373
******************************************** ***************
consensus_8002#0 TTTTCCATTTGTCGCTCTCTTTTACCGTTTGAAAACCAAAGTGTGTATCCGAATCGTGTT 995
consensus_8002#1 TTTTCCATTTGTCGCTCTCTTTTACCGTTTGAAA-CCAAAGTGTGTATCCGAATCGTGTT 432
********************************** *************************
consensus_8002#0 GCGTTGCGCTTTGGGTAACATTTTCCCTTGCATTGCTGGAAAAACGCGCAAGCGGAAGTC 1055
consensus_8002#1 GCGTTGCGCTTTGGGTAACATTTTCCCTTGCATTGCTGGAAAAACGCGCAAGCGGAAGTC 492
************************************************************
consensus_8002#0 TGTGTATCAATAGAGAGG-TTCTTCGAAGAGGCAACATT-GCGTAGGTTTTGATTTGGGT 1113
consensus_8002#1 TGTGTATCAATAGAGAGGGTTCTTCGAAGAGGCAACATNTACACTCNTGGCGATTCTGGC 552
****************** ******************* * * **** **
consensus_8002#0 ACTGCGAAATCCCAGTAGC 1132
consensus_8002#1 -------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||