Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 8005 cluster # 8005       Sequences # 8       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8005#0 length = 727 sequences # 7  
consensus_8005#1 length = 484 sequences # 1  

consensusID : consensus_8005#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 727
fasta sequence
                              [AGAATCGCCCGA-GCAGGATACGACT-GTTTTAACATCCAA-AAAGCTCACCAGTATAAAGTGCAACATTGTTTAAAAATTTGCTTTGAGTATTTATTGGTTTAGTGTACGAATTTTGTGTACCAAATACTTTAAAAAAATCGCGATGAAAATTCTGTGTGTTGTTGTTTGCATTATTTTAATGTTGGTTGATTCATTAGCACAAAACAATCAATATTTGCCCCC-GGATAAAGGTTATGCTTATGACAAACCAAACCAGCAGTTTCCCTCTTCGCCTCAACCACAGCCTTCTCCTGGACGTCCAGCACCCTCTTATGGTCCACCTTCTCAGGATAACCATCATCATGAACCTGGAATGCCTTTCGATTTCCAATACAAAGTGAATGACATTGAAACTCAA-AATGATTATTCTCATAAAGCAG-TG-AGTGA-TGGA-GA-TGTGACTCGTGGCG-AGTATCGAGTTCAACTTCC-GGATGGACGCACACAAGTTGTGCGCTATACT-GCTGA-CTGGAAGA-ATGG-TTAC-AA-TGCAG-AAGTATCA-TACG-AA-GGCGAAGCAA-A-ATATCCAG-AAGGACTTGGCCA---AG-GTGGTGCT-AA-TGCAGG-AGGATATAA-GTACT-A-AAAATTGGAAACTC-TGTTCG---TCGTCG-CTCATCTGATAGATGGACCTAATTGTCCA-CACTCGCATTCGATAAGACTACGATTTCTTTG-ACAACATGTACCATCAAAATAAGCTCCAGCAATAACT]

[+] EMBL AL933651             [AGAATCGCCCGA GCAGGATACGACT GTTTTAACATCCAA AAAGCTCACCAGTATAAAGTGCAACATTGTTTAAAAATTTGCTTTGAGTATTTATTGGTTTAGTGTACGAATTTTGTGTACCAAATACTTTAAAAAAATCGCGATGAAAATTCTGTGTGTTGTTGTTTGCATTATTTTAATGTTGGTTGATTCATTAGCACAAAACAATCAATATTTGCCCCC GGATAAAGGTTATGCTTATGACAAACCAAACCAGCAGTTTCCCTCTTCGCCTCAACCACAGCCTTCTCCTGGACGTCCAGCACCCTCTTATGGTCCACCTTCTCAGGATAACCATCATCATGAACCTGGAATGCCTTTCGATTTCCAATACAAAGTGAATGACATTGAAACTCAACAATGATTATTCTCATAAAGCAGCTGCAGTGACTGGACGA TGTGACTCGTGGCGCAGTATCGAGTTCAACTTCC GGATGGACGCACACAAGTTGTGCGCTATACT GCTGACCTGGAAGACCTGGCTTACNAC TGCCGCAAGTATCACTACGCAANTGCGAAGCAACA ATATCCAGCAAGGACTTGGCCATCGCG CTGGTGCTNAACTGCCGG AGGATATAACGTACT ACAAAATTGGAAACTCTTGTCCG   TCGTCG CTCATCTGATAGATGGACCTAATTGTCCACCACTCGCA TCGATAAGACTACc                                               ]
[+] EMBL AL930631             [ GAATCGCCCGA GGNTNATACGACT GTTTT ACATCCAA AAAGCTCACCAGTATAAAGTGCAACA TGTTTAAAAATTTGCTTTGAGTATTTATTGGTTTAGTGTACGAATTTTGTGTACCAAATACTTTAAAAAAATCGCGATGAAAATTCTGTGTGTTGTTGTTTGCATTATTTTAATGTTGGTTGATTCATTAGCACAAAACAATCAATATTTGCCCCC GGATAAAGGTTATGCTTATGACAAACCAAACCAGCAGTTTCCCTCTTCGCCTCAACCACAGCCTTCTCCTGGACGTCCAGCACCCTCTTATGGTCCACCTTCTCAGGATAACCATCATCATGAACCTGGAATGCCTTTCGATTTCCAATACAAAGTGAATGACATTGAAACTCAA AATGATTATTCTCATAAAGCAG TG AGTGA TGGACGACTGTGACTCGTGGCG AGTATCGAGTTCAACTTCC GGATGGACGCACACAAGTTGTGCGCTATACT GCTGA CTGGAAGA ATGG TTAC AACTGCAG AAGTATCA TACG AA GGCGAAGCAA ACATATCCAG AAGGACTTGGCCA   AGNGTGGTGCT AA TGCAGGCAGGATATAA GTACTCA AAAATTGGCAACTC TG TCGCTATCGTCGCCTCATCTGATAGATGGACCTAATTGTCCA CACTCGCATTCGATAAGACTACGATTTCTTTGCACA                                  ]
[+] EMBL AL931062             [ agATCGCCCGAGGCAGGATACGAC  GTTTTAACATCCAA AAAGCTCACCAGTATAAAGTGCAACA TGTTTAAAAATTTGCTTTGAGTATTTATTGGTTTAGTGTACGAATTTTGTGTACCAAATACTTTTAAAAAATCGCGATGAAAATTCTGTGTGTTGTTGTTTGCATTATTTTAATGTTGGTTGATTCATTAGCACAAAACAATCAATATTTGCCCCC GGATAAAGGTTATGCTTATGACAAACCAAACCAGCAGTTTCCCTCTTCGCCTCAACCACAGCCTTCTCCTGGACGTCCAGCACCCTCTTATGGTCCACCTTCTCAGGATAACCATCATCATGAACCTGGAATGCCTTTCGATTTCCAATACAAAGTGAATGACATTGAAACTCAA AATGATTATTCTCATAAAGCAG TG AGTGA TGGA GA TGTGACTCGTGGCG AGTATCGAGTTCAACTTCC GGATGGACGCACACAAGTTGTGCGCTATACT GCTGA CTGGA                                                                                                                                                                                                                                                         ]
[+] EMBL BX469526             [   ATCGCACGA GGTGNATACGACT GTTTTAACATCCAACAAAGCTCACCAGTATAAAGTGCAACATTGTTTAAAAATTTGCTTTGAGTATTTATTGGTTTAGTGTACGAATTTTGTGTACCAAATACTTTTAAAAAATCGCGATGAAAATTCTGTGTGTTGTTGTTTGCATTATTTTAATGTTGGTTGATTCATTAGCACAAAACAATCAATATTTGCCCCCGGGATAAAGGTTATGCTTATGACAAACCAAACCAGCAGTTTCCCTCTTCGCCTCAACCACAGCCTTCTCCTGGACGTCCAGCACCCTCTTATGGTCCACCTTCTCAGGATAACCATCATCATGAACCTGGAATGCCTTTCGATTTCCAATACAAAGTGAATGACATTGAAACTCAA AATGATTATTCTCATAAAGCAG TG AGTGA TGGA GA TGTGACTCGTGGCG AGTATCGAGTTCAACTTCC GGATGGACGCACACAAGTTGTGCGCTATACT GCTGA CTGGAAGA ATGG TTAC AA TGCAG AAGTATCA TACG AA GGCGAAGCAA A ATATCCAG AAGGACTTGGCCA   AG GTGGTGCT AA TGCAGG AGGATATAA GTACT A AANATT GAAACTC TGTTCG   Tntc                                                                                                       ]
[+] EMBL AL930404             [   ATCG CCGAGGCAGGAT CGACTGGTTTTAACATCCAA AAAGCTCACCAGTATAAAGTGCAACATTGTTTAAAA  TTGCTTTGAGTATTTA TGGTTTAGTGTACGAATTTTGTGTACCAAATACTTTTAAAAAATCGCGATGAAAATTCTGTGTGTTG TG TTGCATTATTTTAATGTTGGTTGATTCATTAGCACAAAACAATCAATATTTGGCCCC GGATAAAGGTTATGCTTATGACAAACCAAACCAGCAGTTTCCCTCTTCGCCTCAACCACAG CTTCTCCTGGACGTCCAGCACCCTCTTATGGTCCACCTTCTCAGGATAACCATCATCATGAACCTGGAATGCCTTTCGATTTCCAATACAAAGTGAATGACATTGAAACTCAA AATGATTATTCTCATAAAGCAG TG AGTGA TGGA GA TGTGACTCGTGGCG AGTATCGAGTTCAACTTCC GGATGGACGCACACAAGTTGTGCGCTATACTCGCTGA CTGGAAG                                                                                                                                                                                                                                                       ]
[+] EMBL BX619491             [                                  CATCCAA AAAGCTCACCAGTATAAAGTGCAACATTGTTTAAAAATTTGCTTTGAGTATTTATTGGTTTAGTGTACGAATTTTGTGTACCAAATACTTTAAAAAAATCGCGATGAAAATTCTGTGTGTTGTTGTTTGCATTATTTTAATGTTGGTTGATTCATTAGCACAAAACAATCAATATTTGCCCCC GGATAAAGGTTATGCTTATGACAAACCAAACCAGCAGTTTCCCTCTTCGCCTCAACCACAGCCTTCTCCTGGACGTCCAGCACCCTCTTATGGTCCACCTTCTCAGGATAACCATCATCATGAACCTGGAATGCCTTTCGATTTCCAATACAAAGTGAATGACATTGAAACTCAA AATGATTATTCTCATAAAGCAG TG AGTGA TGGA GA TGTGACTCGTGGCG AGTATCGAGTTCAACTTCCGGGATGGACGCACACAAGTTGTGCGCTATACT GCTGA CTGn                                                                                                                                                                                                                                                          ]
[+] EMBL BX623239             [                                                CACCAGTATAAAGTGCAACATTGTTTAAAAATTTGCTTTGAGTATTTATTGGTTTAGTGTACGAATTTTGTGTACCAAATACTTTAAAAAAATCGCGATGAAAATTCTGTGTGTTGTTGTTTGCATTATTTTAATGTTGGTTGATTCATTAGCACAAAACAATCAATATTTGCCCCC GGATAAAGGTTATGCTTATGACAAACCAAACCAGCAGTTTCCCTCTTCGCCTCAACCACAGCCTTCTCCTGGACGTCCAGCACCCTCTTATGGTCCACCTTCTCAGGATAACCATCATCATGAACCTGGAATGCCTTTCGATTTCCAATACAAAGTGAATGACATTGAAACTCAA AATGATTATTCTCATAAAGCAG TG AGTGA TGGA GA TGTGACTCGTGGCG AGTATCGAGTTCAACTTCC GGATGGACGCACACAAGTTGTGCGCTATACT GCTGA CTGGAAGA ATGG TTAC AA TGCAG AAGTATCA TACG AA GGCGAAGCAA A ATATCCAG AAGGACTTGGCCA   AG GTGGTGCT AA TGCAGG AGGATATAA GTACT A AAAATTGG AACTC TGTTCGT  TCGTCG CTCATCTGATAGATGGACCTAATTGTCCA CACTCGCATTCGATAAGACTACGATTTCTTTG ACAACATGTACCATCAAAATAAGCTCCAGCAATAACT]


>consensus_8005#0 AGAATCGCCCGAGCAGGATACGACTGTTTTAACATCCAAAAAGCTCACCAGTATAAAGTG CAACATTGTTTAAAAATTTGCTTTGAGTATTTATTGGTTTAGTGTACGAATTTTGTGTAC CAAATACTTTAAAAAAATCGCGATGAAAATTCTGTGTGTTGTTGTTTGCATTATTTTAAT GTTGGTTGATTCATTAGCACAAAACAATCAATATTTGCCCCCGGATAAAGGTTATGCTTA TGACAAACCAAACCAGCAGTTTCCCTCTTCGCCTCAACCACAGCCTTCTCCTGGACGTCC AGCACCCTCTTATGGTCCACCTTCTCAGGATAACCATCATCATGAACCTGGAATGCCTTT CGATTTCCAATACAAAGTGAATGACATTGAAACTCAAAATGATTATTCTCATAAAGCAGT GAGTGATGGAGATGTGACTCGTGGCGAGTATCGAGTTCAACTTCCGGATGGACGCACACA AGTTGTGCGCTATACTGCTGACTGGAAGAATGGTTACAATGCAGAAGTATCATACGAAGG CGAAGCAAAATATCCAGAAGGACTTGGCCAAGGTGGTGCTAATGCAGGAGGATATAAGTA CTAAAAATTGGAAACTCTGTTCGTCGTCGCTCATCTGATAGATGGACCTAATTGTCCACA CTCGCATTCGATAAGACTACGATTTCTTTGACAACATGTACCATCAAAATAAGCTCCAGC AATAACT



consensusID : consensus_8005#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 484
fasta sequence
                              [TCGAGGCAAGAATCCGGCACGATGGAGAATTTTGTGTACCAAATACTTCAAAAAAATCGCGATGAAAATTCTGATCAAGATGTTCATTGAAAACGTTTGGAAACTCCTCTTTGTATTAGTGATGGAAAAAATGAATCTCTGAAGGGATTCGAATTTTCGAATCGCAATCCCAATGTGGTATAGCGTTTTTTGTTATTGCAGCGAGATGGAGGGGGGTGTTTAGGGGGACTAGTCAAAGCTGGAATGAGAGTATTCTGTTTATTCTTAATTATTTAACGATTTCAGTACTTACATCATAATTAGTACAGGTAGTCCCTGAGTGTGTAGTGTTTAGCATTATTTTAAATGTTGGTTGATTCATTAGCACAAAACAATCAATATTTGCCCCCGGATAAACGGTTATGCTTATGACAAACCAAACCAGCAGTTTCCCTCTNTCGCCTCAACCAACAGCCTTTCTCCCTGGACAGTCCAGGAACACCTC]

[+] EMBL BX468919             [TCGAGGCAAGAATCCGGCACGATGGAGAATTTTGTGTACCAAATACTTCAAAAAAATCGCGATGAAAATTCTGATCAAGATGTTCATTGAAAACGTTTGGAAACTCCTCTTTGTATTAGTGATGGAAAAAATGAATCTCTGAAGGGATTCGAATTTTCGAATCGCAATCCCAATGTGGTATAGCGTTTTTTGTTATTGCAGCGAGATGGAGGGGGGTGTTTAGGGGGACTAGTCAAAGCTGGAATGAGAGTATTCTGTTTATTCTTAATTATTTAACGATTTCAGTACTTACATCATAATTAGTACAGGTAGTCCCTGAGTGTGTAGTGTTTAGCATTATTTTAAATGTTGGTTGATTCATTAGCACAAAACAATCAATATTTGCCCCCGGATAAACGGTTATGCTTATGACAAACCAAACCAGCAGTTTCCCTCTNTCGCCTCAACCAACAGCCTTTCTCCCTGGACAGTCCAGGAACACCTC]


>consensus_8005#1 TCGAGGCAAGAATCCGGCACGATGGAGAATTTTGTGTACCAAATACTTCAAAAAAATCGC GATGAAAATTCTGATCAAGATGTTCATTGAAAACGTTTGGAAACTCCTCTTTGTATTAGT GATGGAAAAAATGAATCTCTGAAGGGATTCGAATTTTCGAATCGCAATCCCAATGTGGTA TAGCGTTTTTTGTTATTGCAGCGAGATGGAGGGGGGTGTTTAGGGGGACTAGTCAAAGCT GGAATGAGAGTATTCTGTTTATTCTTAATTATTTAACGATTTCAGTACTTACATCATAAT TAGTACAGGTAGTCCCTGAGTGTGTAGTGTTTAGCATTATTTTAAATGTTGGTTGATTCA TTAGCACAAAACAATCAATATTTGCCCCCGGATAAACGGTTATGCTTATGACAAACCAAA CCAGCAGTTTCCCTCTNTCGCCTCAACCAACAGCCTTTCTCCCTGGACAGTCCAGGAACA CCTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8005#0      AGAATCGCCCGAGCAGGATACGACTGTTTTAACATCCAAAAAGCTCACCAGTATAAAGTG 60
consensus_8005#1      ------------------------------------------------------------
                                                                                  

consensus_8005#0      CAACATTGTTTAAAAATTTGCTTTGAGTATTTATTGGTTTAGTGTACGAATTTTGTGTAC 120
consensus_8005#1      -----------------TCGAGGCAAGAATCC---GGCACGATGGA-GAATTTTGTGTAC 39
                                       * *     ** **     **     ** * *************

consensus_8005#0      CAAATACTTTAAAAAAATCGCGATGAAAATTCTGTGTGTTGTTGTTTGCATTATTTTAAT 180
consensus_8005#1      CAAATACTTCAAAAAAATCGCGATGAAAATTCTG---ATCAAGATGTTCATTGAA--AAC 94
                      ********* ************************    *     * * ****     ** 

consensus_8005#0      GTTGGTTGATTCATTAGCACAAAACAATCAATATTTGCCCCCGGATAAAGGTTATGCTTA 240
consensus_8005#1      GTTTGGAAACTCCTCTTTGTA------TTAGTGAT-------GGAAAAAATGAATCTCTG 141
                      *** *   * ** *      *      * * *  *       *** ***    **   * 

consensus_8005#0      TGACAAACCAAACCAGCAGTTTCCCTCTTCGCCTCAACCACAGCCTTCTCCTGGACGTCC 300
consensus_8005#1      AAGGGATTCGAATTTTCGAATCGCAATCCCAATGTGGT-ATAGCGTT-TTTTGTTATTGC 199
                           *  * **    *   *  *     *         * *** ** *  **    * *

consensus_8005#0      AGCACCCTCTTATGGTCCACCTTCTCAGGATAACCATCATCATGAACCTGGAATGCCTTT 360
consensus_8005#1      AGCGAGATGGAGGGGGGTGTTTAGGGGGACTAGTCAA-AGCTGGAATGAGAGTATTCTGT 258
                      ***    *     **      *     *  **  **  * *  ***   *      ** *

consensus_8005#0      CGATTTCCAATACAAAGTGAATGACATTGAAACTCAAAATGATTATTCTCATAAAGCAGT 420
consensus_8005#1      TTATTCTTAAT---TATTTAACGATTTCAGTACTTACA-TCATAATTAGTACAG-GTAGT 313
                        ***   ***    * * ** **  *    *** * * * ** ***   * *  * ***

consensus_8005#0      GAGTGATGGAGATGTGACTCGTGGCGAGTATCGAGTTCAACTTCCG--GATGGACGCACA 478
consensus_8005#1      CCCTGA-------GTGTGTAGTGTTTAGCATTATTTTAAATGTTGGTTGATTCATTAGCA 366
                         ***       ***  * ***   ** **    ** **  *  *  ***  *    **

consensus_8005#0      CAAGTTGTGCGCTATACTGCTGACTGGAAGAATGGTTACAATGCAGAAGTATCATACGAA 538
consensus_8005#1      CAAAACAATCAATAT-TTGCCC-CCGGATAAACGGTTATGCTTATGACAAACCAAACCA- 423
                      ***      *  ***  ***   * ***  ** *****   *   **   * ** ** * 

consensus_8005#0      GGCGAAGCAAAATATCCAGAAGGACTTGGCCAAGGTGGTGCTAATGCAGGAGGATATAAG 598
consensus_8005#1      ------GCAGTTTCCCTCTNTCGCCTCAACCAACA-GCCTTTCTCCCTGGACAGTCCAGG 476
                            ***   *  *      * **   ****   *    *    * ***   *  * *

consensus_8005#0      TACTAAAAATTGGAAACTCTGTTCGTCGTCGCTCATCTGATAGATGGACCTAATTGTCCA 658
consensus_8005#1      AACACCTC---------------------------------------------------- 484
                       **                                                         

consensus_8005#0      CACTCGCATTCGATAAGACTACGATTTCTTTGACAACATGTACCATCAAAATAAGCTCCA 718
consensus_8005#1      ------------------------------------------------------------
                                                                                  

consensus_8005#0      GCAATAACT 727
consensus_8005#1      ---------
                               




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)