These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8005#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 727 fasta sequence [AGAATCGCCCGA-GCAGGATACGACT-GTTTTAACATCCAA-AAAGCTCACCAGTATAAAGTGCAACATTGTTTAAAAATTTGCTTTGAGTATTTATTGGTTTAGTGTACGAATTTTGTGTACCAAATACTTTAAAAAAATCGCGATGAAAATTCTGTGTGTTGTTGTTTGCATTATTTTAATGTTGGTTGATTCATTAGCACAAAACAATCAATATTTGCCCCC-GGATAAAGGTTATGCTTATGACAAACCAAACCAGCAGTTTCCCTCTTCGCCTCAACCACAGCCTTCTCCTGGACGTCCAGCACCCTCTTATGGTCCACCTTCTCAGGATAACCATCATCATGAACCTGGAATGCCTTTCGATTTCCAATACAAAGTGAATGACATTGAAACTCAA-AATGATTATTCTCATAAAGCAG-TG-AGTGA-TGGA-GA-TGTGACTCGTGGCG-AGTATCGAGTTCAACTTCC-GGATGGACGCACACAAGTTGTGCGCTATACT-GCTGA-CTGGAAGA-ATGG-TTAC-AA-TGCAG-AAGTATCA-TACG-AA-GGCGAAGCAA-A-ATATCCAG-AAGGACTTGGCCA---AG-GTGGTGCT-AA-TGCAGG-AGGATATAA-GTACT-A-AAAATTGGAAACTC-TGTTCG---TCGTCG-CTCATCTGATAGATGGACCTAATTGTCCA-CACTCGCATTCGATAAGACTACGATTTCTTTG-ACAACATGTACCATCAAAATAAGCTCCAGCAATAACT] [+] EMBL AL933651 [AGAATCGCCCGA GCAGGATACGACT GTTTTAACATCCAA AAAGCTCACCAGTATAAAGTGCAACATTGTTTAAAAATTTGCTTTGAGTATTTATTGGTTTAGTGTACGAATTTTGTGTACCAAATACTTTAAAAAAATCGCGATGAAAATTCTGTGTGTTGTTGTTTGCATTATTTTAATGTTGGTTGATTCATTAGCACAAAACAATCAATATTTGCCCCC GGATAAAGGTTATGCTTATGACAAACCAAACCAGCAGTTTCCCTCTTCGCCTCAACCACAGCCTTCTCCTGGACGTCCAGCACCCTCTTATGGTCCACCTTCTCAGGATAACCATCATCATGAACCTGGAATGCCTTTCGATTTCCAATACAAAGTGAATGACATTGAAACTCAACAATGATTATTCTCATAAAGCAGCTGCAGTGACTGGACGA TGTGACTCGTGGCGCAGTATCGAGTTCAACTTCC GGATGGACGCACACAAGTTGTGCGCTATACT GCTGACCTGGAAGACCTGGCTTACNAC TGCCGCAAGTATCACTACGCAANTGCGAAGCAACA ATATCCAGCAAGGACTTGGCCATCGCG CTGGTGCTNAACTGCCGG AGGATATAACGTACT ACAAAATTGGAAACTCTTGTCCG TCGTCG CTCATCTGATAGATGGACCTAATTGTCCACCACTCGCA TCGATAAGACTACc ] [+] EMBL AL930631 [ GAATCGCCCGA GGNTNATACGACT GTTTT ACATCCAA AAAGCTCACCAGTATAAAGTGCAACA TGTTTAAAAATTTGCTTTGAGTATTTATTGGTTTAGTGTACGAATTTTGTGTACCAAATACTTTAAAAAAATCGCGATGAAAATTCTGTGTGTTGTTGTTTGCATTATTTTAATGTTGGTTGATTCATTAGCACAAAACAATCAATATTTGCCCCC GGATAAAGGTTATGCTTATGACAAACCAAACCAGCAGTTTCCCTCTTCGCCTCAACCACAGCCTTCTCCTGGACGTCCAGCACCCTCTTATGGTCCACCTTCTCAGGATAACCATCATCATGAACCTGGAATGCCTTTCGATTTCCAATACAAAGTGAATGACATTGAAACTCAA AATGATTATTCTCATAAAGCAG TG AGTGA TGGACGACTGTGACTCGTGGCG AGTATCGAGTTCAACTTCC GGATGGACGCACACAAGTTGTGCGCTATACT GCTGA CTGGAAGA ATGG TTAC AACTGCAG AAGTATCA TACG AA GGCGAAGCAA ACATATCCAG AAGGACTTGGCCA AGNGTGGTGCT AA TGCAGGCAGGATATAA GTACTCA AAAATTGGCAACTC TG TCGCTATCGTCGCCTCATCTGATAGATGGACCTAATTGTCCA CACTCGCATTCGATAAGACTACGATTTCTTTGCACA ] [+] EMBL AL931062 [ agATCGCCCGAGGCAGGATACGAC GTTTTAACATCCAA AAAGCTCACCAGTATAAAGTGCAACA TGTTTAAAAATTTGCTTTGAGTATTTATTGGTTTAGTGTACGAATTTTGTGTACCAAATACTTTTAAAAAATCGCGATGAAAATTCTGTGTGTTGTTGTTTGCATTATTTTAATGTTGGTTGATTCATTAGCACAAAACAATCAATATTTGCCCCC GGATAAAGGTTATGCTTATGACAAACCAAACCAGCAGTTTCCCTCTTCGCCTCAACCACAGCCTTCTCCTGGACGTCCAGCACCCTCTTATGGTCCACCTTCTCAGGATAACCATCATCATGAACCTGGAATGCCTTTCGATTTCCAATACAAAGTGAATGACATTGAAACTCAA AATGATTATTCTCATAAAGCAG TG AGTGA TGGA GA TGTGACTCGTGGCG AGTATCGAGTTCAACTTCC GGATGGACGCACACAAGTTGTGCGCTATACT GCTGA CTGGA ] [+] EMBL BX469526 [ ATCGCACGA GGTGNATACGACT GTTTTAACATCCAACAAAGCTCACCAGTATAAAGTGCAACATTGTTTAAAAATTTGCTTTGAGTATTTATTGGTTTAGTGTACGAATTTTGTGTACCAAATACTTTTAAAAAATCGCGATGAAAATTCTGTGTGTTGTTGTTTGCATTATTTTAATGTTGGTTGATTCATTAGCACAAAACAATCAATATTTGCCCCCGGGATAAAGGTTATGCTTATGACAAACCAAACCAGCAGTTTCCCTCTTCGCCTCAACCACAGCCTTCTCCTGGACGTCCAGCACCCTCTTATGGTCCACCTTCTCAGGATAACCATCATCATGAACCTGGAATGCCTTTCGATTTCCAATACAAAGTGAATGACATTGAAACTCAA AATGATTATTCTCATAAAGCAG TG AGTGA TGGA GA TGTGACTCGTGGCG AGTATCGAGTTCAACTTCC GGATGGACGCACACAAGTTGTGCGCTATACT GCTGA CTGGAAGA ATGG TTAC AA TGCAG AAGTATCA TACG AA GGCGAAGCAA A ATATCCAG AAGGACTTGGCCA AG GTGGTGCT AA TGCAGG AGGATATAA GTACT A AANATT GAAACTC TGTTCG Tntc ] [+] EMBL AL930404 [ ATCG CCGAGGCAGGAT CGACTGGTTTTAACATCCAA AAAGCTCACCAGTATAAAGTGCAACATTGTTTAAAA TTGCTTTGAGTATTTA TGGTTTAGTGTACGAATTTTGTGTACCAAATACTTTTAAAAAATCGCGATGAAAATTCTGTGTGTTG TG TTGCATTATTTTAATGTTGGTTGATTCATTAGCACAAAACAATCAATATTTGGCCCC GGATAAAGGTTATGCTTATGACAAACCAAACCAGCAGTTTCCCTCTTCGCCTCAACCACAG CTTCTCCTGGACGTCCAGCACCCTCTTATGGTCCACCTTCTCAGGATAACCATCATCATGAACCTGGAATGCCTTTCGATTTCCAATACAAAGTGAATGACATTGAAACTCAA AATGATTATTCTCATAAAGCAG TG AGTGA TGGA GA TGTGACTCGTGGCG AGTATCGAGTTCAACTTCC GGATGGACGCACACAAGTTGTGCGCTATACTCGCTGA CTGGAAG ] [+] EMBL BX619491 [ CATCCAA AAAGCTCACCAGTATAAAGTGCAACATTGTTTAAAAATTTGCTTTGAGTATTTATTGGTTTAGTGTACGAATTTTGTGTACCAAATACTTTAAAAAAATCGCGATGAAAATTCTGTGTGTTGTTGTTTGCATTATTTTAATGTTGGTTGATTCATTAGCACAAAACAATCAATATTTGCCCCC GGATAAAGGTTATGCTTATGACAAACCAAACCAGCAGTTTCCCTCTTCGCCTCAACCACAGCCTTCTCCTGGACGTCCAGCACCCTCTTATGGTCCACCTTCTCAGGATAACCATCATCATGAACCTGGAATGCCTTTCGATTTCCAATACAAAGTGAATGACATTGAAACTCAA AATGATTATTCTCATAAAGCAG TG AGTGA TGGA GA TGTGACTCGTGGCG AGTATCGAGTTCAACTTCCGGGATGGACGCACACAAGTTGTGCGCTATACT GCTGA CTGn ] [+] EMBL BX623239 [ CACCAGTATAAAGTGCAACATTGTTTAAAAATTTGCTTTGAGTATTTATTGGTTTAGTGTACGAATTTTGTGTACCAAATACTTTAAAAAAATCGCGATGAAAATTCTGTGTGTTGTTGTTTGCATTATTTTAATGTTGGTTGATTCATTAGCACAAAACAATCAATATTTGCCCCC GGATAAAGGTTATGCTTATGACAAACCAAACCAGCAGTTTCCCTCTTCGCCTCAACCACAGCCTTCTCCTGGACGTCCAGCACCCTCTTATGGTCCACCTTCTCAGGATAACCATCATCATGAACCTGGAATGCCTTTCGATTTCCAATACAAAGTGAATGACATTGAAACTCAA AATGATTATTCTCATAAAGCAG TG AGTGA TGGA GA TGTGACTCGTGGCG AGTATCGAGTTCAACTTCC GGATGGACGCACACAAGTTGTGCGCTATACT GCTGA CTGGAAGA ATGG TTAC AA TGCAG AAGTATCA TACG AA GGCGAAGCAA A ATATCCAG AAGGACTTGGCCA AG GTGGTGCT AA TGCAGG AGGATATAA GTACT A AAAATTGG AACTC TGTTCGT TCGTCG CTCATCTGATAGATGGACCTAATTGTCCA CACTCGCATTCGATAAGACTACGATTTCTTTG ACAACATGTACCATCAAAATAAGCTCCAGCAATAACT] consensusID : consensus_8005#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence [TCGAGGCAAGAATCCGGCACGATGGAGAATTTTGTGTACCAAATACTTCAAAAAAATCGCGATGAAAATTCTGATCAAGATGTTCATTGAAAACGTTTGGAAACTCCTCTTTGTATTAGTGATGGAAAAAATGAATCTCTGAAGGGATTCGAATTTTCGAATCGCAATCCCAATGTGGTATAGCGTTTTTTGTTATTGCAGCGAGATGGAGGGGGGTGTTTAGGGGGACTAGTCAAAGCTGGAATGAGAGTATTCTGTTTATTCTTAATTATTTAACGATTTCAGTACTTACATCATAATTAGTACAGGTAGTCCCTGAGTGTGTAGTGTTTAGCATTATTTTAAATGTTGGTTGATTCATTAGCACAAAACAATCAATATTTGCCCCCGGATAAACGGTTATGCTTATGACAAACCAAACCAGCAGTTTCCCTCTNTCGCCTCAACCAACAGCCTTTCTCCCTGGACAGTCCAGGAACACCTC] [+] EMBL BX468919 [TCGAGGCAAGAATCCGGCACGATGGAGAATTTTGTGTACCAAATACTTCAAAAAAATCGCGATGAAAATTCTGATCAAGATGTTCATTGAAAACGTTTGGAAACTCCTCTTTGTATTAGTGATGGAAAAAATGAATCTCTGAAGGGATTCGAATTTTCGAATCGCAATCCCAATGTGGTATAGCGTTTTTTGTTATTGCAGCGAGATGGAGGGGGGTGTTTAGGGGGACTAGTCAAAGCTGGAATGAGAGTATTCTGTTTATTCTTAATTATTTAACGATTTCAGTACTTACATCATAATTAGTACAGGTAGTCCCTGAGTGTGTAGTGTTTAGCATTATTTTAAATGTTGGTTGATTCATTAGCACAAAACAATCAATATTTGCCCCCGGATAAACGGTTATGCTTATGACAAACCAAACCAGCAGTTTCCCTCTNTCGCCTCAACCAACAGCCTTTCTCCCTGGACAGTCCAGGAACACCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8005#0 AGAATCGCCCGAGCAGGATACGACTGTTTTAACATCCAAAAAGCTCACCAGTATAAAGTG 60 consensus_8005#1 ------------------------------------------------------------ consensus_8005#0 CAACATTGTTTAAAAATTTGCTTTGAGTATTTATTGGTTTAGTGTACGAATTTTGTGTAC 120 consensus_8005#1 -----------------TCGAGGCAAGAATCC---GGCACGATGGA-GAATTTTGTGTAC 39 * * ** ** ** ** * ************* consensus_8005#0 CAAATACTTTAAAAAAATCGCGATGAAAATTCTGTGTGTTGTTGTTTGCATTATTTTAAT 180 consensus_8005#1 CAAATACTTCAAAAAAATCGCGATGAAAATTCTG---ATCAAGATGTTCATTGAA--AAC 94 ********* ************************ * * * **** ** consensus_8005#0 GTTGGTTGATTCATTAGCACAAAACAATCAATATTTGCCCCCGGATAAAGGTTATGCTTA 240 consensus_8005#1 GTTTGGAAACTCCTCTTTGTA------TTAGTGAT-------GGAAAAAATGAATCTCTG 141 *** * * ** * * * * * * *** *** ** * consensus_8005#0 TGACAAACCAAACCAGCAGTTTCCCTCTTCGCCTCAACCACAGCCTTCTCCTGGACGTCC 300 consensus_8005#1 AAGGGATTCGAATTTTCGAATCGCAATCCCAATGTGGT-ATAGCGTT-TTTTGTTATTGC 199 * * ** * * * * * *** ** * ** * * consensus_8005#0 AGCACCCTCTTATGGTCCACCTTCTCAGGATAACCATCATCATGAACCTGGAATGCCTTT 360 consensus_8005#1 AGCGAGATGGAGGGGGGTGTTTAGGGGGACTAGTCAA-AGCTGGAATGAGAGTATTCTGT 258 *** * ** * * ** ** * * *** * ** * consensus_8005#0 CGATTTCCAATACAAAGTGAATGACATTGAAACTCAAAATGATTATTCTCATAAAGCAGT 420 consensus_8005#1 TTATTCTTAAT---TATTTAACGATTTCAGTACTTACA-TCATAATTAGTACAG-GTAGT 313 *** *** * * ** ** * *** * * * ** *** * * * *** consensus_8005#0 GAGTGATGGAGATGTGACTCGTGGCGAGTATCGAGTTCAACTTCCG--GATGGACGCACA 478 consensus_8005#1 CCCTGA-------GTGTGTAGTGTTTAGCATTATTTTAAATGTTGGTTGATTCATTAGCA 366 *** *** * *** ** ** ** ** * * *** * ** consensus_8005#0 CAAGTTGTGCGCTATACTGCTGACTGGAAGAATGGTTACAATGCAGAAGTATCATACGAA 538 consensus_8005#1 CAAAACAATCAATAT-TTGCCC-CCGGATAAACGGTTATGCTTATGACAAACCAAACCA- 423 *** * *** *** * *** ** ***** * ** * ** ** * consensus_8005#0 GGCGAAGCAAAATATCCAGAAGGACTTGGCCAAGGTGGTGCTAATGCAGGAGGATATAAG 598 consensus_8005#1 ------GCAGTTTCCCTCTNTCGCCTCAACCAACA-GCCTTTCTCCCTGGACAGTCCAGG 476 *** * * * ** **** * * * *** * * * consensus_8005#0 TACTAAAAATTGGAAACTCTGTTCGTCGTCGCTCATCTGATAGATGGACCTAATTGTCCA 658 consensus_8005#1 AACACCTC---------------------------------------------------- 484 ** consensus_8005#0 CACTCGCATTCGATAAGACTACGATTTCTTTGACAACATGTACCATCAAAATAAGCTCCA 718 consensus_8005#1 ------------------------------------------------------------ consensus_8005#0 GCAATAACT 727 consensus_8005#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||