These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8039#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1174 fasta sequence [TCCAGCAAGACAGCAAAGCTTCTTTTCGCCGTTTTGTTGTTGTTATTCAACAATTGATATTCGTTATTTGTTTATCTGTTTTGATGCCACATCTTTTTCTCAATTAGTGGTTTTGCAGAGAACAAAAATGGGGCCAAATTTTCATCATCGAAAATATTCCAGAAATTAATTCGATCGATTTCACCCACCCACGATAGAGCAAGAAAATGTTCAGTATCGACAATCCGATCAAGCAAGCTCCAAGCCGAATTCGATCCTATCCTGTCACCGGTTGGAATGTTGATGTTCCGAAAGGCGGTTAAAATTAGTTGATAAACAAAAGCGCTCGCTCTCTGCGGCAGTTCGTTTGCGCGTTGCACTTTTTTTGTTGCGATTTGGC-GTCCTTGTTAATTTTAGCAACAAGTGTTTTGTATGTTTTGTTTTGCATCGCGTGATAATAATAGCAATCGGCGTCGAAAATGAACATGCTTGAAGCCAACATGCGTAAGGTTAGCGATAGCCTGAACAGCACCGTCCGATTGGCGGCAGAGTTTGGTGATGAATCATTAAAAGATTTAAAGCTTTACACCAGTCTGGTGGAAAAGCTGTGCGAAATTGACAGCAAAATGAACACCCACCGGAAGGCGCTAGCGGAATCCTACGCAGAGCAAACCGTGGAATGCTTCGACCAGCGCTATGAAACGAGTATAGATCGGAAGAAACCCCAGGTCCGGGGGCACAAACGCTACAAGGACTTTGTGCAGTACGCCAAACCGCTGCTCAATCCATCGCTGCAAGGTCAGCCCTCCCAAAACGACAATGACGATGATGATGATGGCGATTTGGTGATGGAGGCCGACGTGGGCAATATGGTTGACCCGATCTCGAAGCGCCCGCTGGAGGTGCCGGTGCGCAACAAGCAGTGCAATCATGTGTACGAAAAGAGCGTCATCGAGAATCTGTTGAAGCAGAACCCGCGTACCCGCTGCCCGGTGATGGGCTGCGCAGCGCAAGGATACGTTCAGCAGCATTTGCTAGAGGTTGACGTTAGATTGCAGCAGCAGCTCATTCAAACCCGGTCGGTGTTTACCTAAAATCGTGATCAGTGGGAGTTGAGTTTTAGTGCCGATGAGTGCGTTTGTTACACGGGTGCACCATAGACCTCCAATATGGACATATTCTCTCAGATTTTCGT] [+] EMBL BX602550 [TCCAGCAAGACAGCAAAGCTTCTTTTCGCCGTTTTGTTGTTGTTATTCAACAATTGATATTCGTTATTTGTTTATCTGTTTTGATGCCACATCTTTTTCTCAATTAGTGGTTTTGCAGAGAACAAAAATGGGGCCAAATTTTCATCATCGAAAATATTCCAGAAATTAATTCGATCGATTTCACCCACCCACGATAGAGCAAGAAAATGTTCAGTATCGACAATCCGATCAAGCAAGCTCCAAGCCGAATTCGATCCTATCCTGTCACCGGTTGGAATGTTGATGTTCCGAAAGGCGGTTAAAATTAGTTGATAAACAAAAGCGCTCGCTCTCTGCGGCAGTTCGTTTGCGCGTTGCACTTTTTTTGTTGCGATTTGGC GTCCTTGTTAATTTTAGCAACAAGTGTTTTGTATGTTTTGTTTTGCATCGCGTGATAATAATAGCAATCGGCGTCGAAAATGAACATGCTTGAAGCCAACATGCGTAAGGTTAGCGATAGCCTGAACAGCACCGTCCGATTGGCGGCAGAGTTTGGTGATGAATCATTAAAAGATTTAAAGCTTTAC ] [+] EMBL BM654759 [ ccGCAGTTCGTTTGCGCGTTGCACTTTTTTTGTTGCGATTTGGC GTCCTTGTTAATTTTAGCAACAAGTGTTTTGTATGTTTTGTTTTGCATCGCGTGATAATAATAGCAATCGGCGTCGAAAATGAACATGCTTGAAGCCAACATGCGTAAGGTTAGCGATAGCCTGAACAGCACCGTCCGATTGGCGGCAGAGTTTGGTGATGAATCATTAAAAGATTTAAAGCTTTACACCAGTCTGGTGGAAAAGCTGTGCGAAATTGACAGCAAAATGAACACCCACCGGAAGGCGCTAGCGGAATCCTACGCAGAGCAAACCGTGGAATGCTTCGACCAGCGCTATGAAACGAGTATAGATCGGAAGAAACCCCAGGTCCGGGGGCACAAACGCTACAAGGACTTTGTGCAGTACGCCAAACCGCTGCTCAATCCATCGCTGCAAGGTCAGCCCTCCCAAAACGACAATGACGATGATGATGATGGCGATTTGGTGATGGAGGCCGACGTGGGCAATATGGTTGACCCGATCTCGAAGCGCCCGCTGGAGGTGCCGGTGCGCAACAAGCAGTGCAATCATGTGTACGAAAAGAGCGTCATCGAGAATCTGTTGAAGCAGAACCCGCGTACCCGCTGCCCGGTGATGGGCTGCGCAGCGCAAGGATACGTTCAGCAGCATTTGCTAGAGGTTGA ] [+] EMBL BX610370 [ TGGCTGTCCTTGTTAATTTTAGCAACAAGTGTTTTGTATGTTTTGTTTTGCATCGCGTGATAATAATAGCAATCGGCGTCGAAAATGAACATGCTTGAAGCCAACATGCGTAAGGTTAGCGATAGCCTGAACAGCACCGTCCGATTGGCGGCATAGTTTGGTGATGAATCATTAAAAGATTTAAAGCTTTACACCAGTCTGGTGGAAAAGCTGTGCGAAATTGACAGCAAAATGAACACCCACCGGAAGGCGCTAGCGGAATCCTACGCAGAGCAAACCGTGGAATGCTTCGACCAGCGCTATGAAACGAGTATAGATCGGAAGAAACCCCAGGTCCGGGGGCACAAACGCTACAAGGACTTTGTGCAGTACGCCAAACCGCTGCTCAATCCAT GCTGCAAGGTCAGCCCTCCCAAAACGACAATGACGATGATGATGATGGCGATTTGGTGATGGAGGCCGACGTGGGCAATATGGTTGACCCGATCTCGAAGCGCCCGCTGGAGGTGCCGGTGCGCAACAAGCAGTGCAATCATGTGTACGAAAAGAGCGTCATCGAGAATCTGTTGAAGCAGAACCCGCGTACCCGCTGCCCGGTGATGGGCTGCTCAGCGCAAGGATACGTTCAGCAGCATTTGCTAGAGGTTGACGTTAGATTGCAGCAGCAGCTCATTCAAACCCGGTCGGTG ] [+] EMBL BX617971 [ ttGC GTCCTTGTTAATTTTAGCAACAAGTGTTTTGTATGTTTTGTTTTGCATCGCGTGATAATAATAGCAATCGGCGTCGAAAATGAACATGCTTGAAGCCAACATGCGTAAGGTTAGCGATAGCCTGAACAGCACCGTCCGATTGGCGGCATAGTTTGGTGATGAATCATTAAAAGATTTAAAGCTTTACACCAGTCTGGTGGAAAAGCTGTGCGAAATTGACAGCAAAATGAACACCCACCGGAAGGCGCTAGCGGAATCCTACGCAGAGCAAACCGTGGAATGCTTCGACCAGCGCTATGAAACGAGTATAGATCGGAAGAAACCCCAGGTCCGGGGGCACAAACGCTACAAGGACTTTGTGCAGTACGCCAAACCGCTGCTCAATCCAT GCTGCAAGGTCAGCCCTCCCAAAACGACAATGACGATGATGATGATGGCGATTTGGTGATGGAGGCCGACGTGGGCAATATGGTTGACCCGATCTCGAAGCGCCCGCTGGAGGTGCCGGTGCGCAACAAGCAGTGCAATCATGTGTACGAAAAGAGCGTCATCGAGAATCTGTTGAAGCAGAACCCGCGTACCCGCTGCCCGGTGATGGGCTGCTCAGCGCAAGGATACGTTCAGCAGCATTTGCTAGAGGTTGACGTTAGATTGCAGCAGCAGCTCATTCAAA ] [+] EMBL BX609142 [ TTTAGCAACAAGTGTTTTGTATGTTTTGTTTTGCATCGCGTGATAATAATAGCAATCGGCGTCGAAAATGAACATGCTTGAAGCCAACATGCGTAAGGTTAGCGATAGCCTGAACAGCACCGTCCGATTGGCGGCATAGTTTGGTGATGAATCATTAAAAGATTTAAAGCTTTACACCAGTCTGGTGGAAAAGCTGTGCGAAATTGACAGCAAAATGAACACCCACCGGAAGGCGCTAGCGGAATCCTACGCAGAGCAAACCGTGGAATGCTTCGACCAGCGCTATGAAACGAGTATAGATCGGAAGAAACCCCAGGTCCGGGGGCACAAACGCTACAAGGACTTTGTGCAGTACGCCAAACCGCTGCTCAATCCAT GCTGCAAGGTCAGCCCTCCCAAAACGACAATGACGATGATGATGATGGCGATTTGGTGATGGAGGCCGACGTGGGCAATATGGTTGACCCGATCTCGAAGCGCCCGCTGGAGGTGCCGGTGCGCAACAAGCAGTGCAATCATGTGTACGAAAAGAGCGTCATCGAGAATCTGTTGAAGCAGAACCCGCGTACCCGCTGCCCGGTGATGGGCTGCTCAGCGCAAGGATACGTTCAGCAGCATTTGCTAGAGGTTGACGTT ] [+] EMBL BM596611 [ ccgTTTGTTTTGCATCGCGTGATAATAATAGCAATCGGCGTCGAAAATGAACATGCTTGAAGCCAACATGCGTAAGGTTAGCGATAGCCTGAACAGCACCGTCCGATTGGCGGCAGAGTTTGGTGATGAATCATTAAAAGATTTAAAGCTTTACACCAGTCTGGTGGAAAAGCTGTGCGAAATTGACAGCAAAATGAACACCCACCGGAAGGCGCTAGCGGAATCCTACGCAGAGCAAACCGTGGAATGCTTCGACCAGCGCTATGAAACGAGTATAGATCGGAAGAAACCCCAGGTCCGGGGGCACAAACGCTACAAGGACTTTGTGCAGTACGCCAAACCGCTGCTCAATCCATCGCTGCAAGGTCAGCCCTCCCAAAACGACAATGACGATGATGATGATGGCGATTTGGTGATGGAGGCCGACGTGGGCAATATGGTTGACCCGATCTCGAAGCGCCCGCTGGAGGTGCCGGTGCGCAACAAGCAGTGCAATCATGTGTACGAAAAGAGCGTCATCGAGAATCTGTTGAAGCAGAACCCGCGTACCCGCTGCCCGGTGATGGGCTGCGCAGCGCAAGGATACGTTCAGCAGCATTTGCTAGAGGTTGACGTTAGATTGCAGCAGCAGCTCATTCAAACCCGGTC ] [+] EMBL BM638347 [ ccgCATGCGTAAGGTTAGCGATAGCCTGAACAGCACCGTCCGATTGGCGGCAGAGTTTGGTGATGAATCATTAAAAGATTTAAAGCTTTACACCAGTCTGGTGGAAAAGCTGTGCGAAATTGACAGCAAAATGAACACCCACCGGAAGGCGCTAGCGGAATCCTACGCAGAGCAAACCGTGGAATGCTTCGACCAGCGCTATGAAACGAGTATAGATCGGAAGAAACCCCAGGTCCGGGGGCACAAACGCTACAAGGACTTTGTGCAGTACGCCAAACCGCTGCTCAATCCATCGCTGCAAGGTCAGCCCTCCCAAAACGACAATGACGATGATGATGATGGCGATTTGGTGATGGAGGCCGACGTGGGCAATATGGTTGACCCGATCTCGAAGCGCCCGCTGGAGGTGCCGGTGCGCAACAAGCAGTGCAATCATGTGTACGAAAAGAGCGTCATCGAGAATCTGTTGAAGCAGAACCCGCGTACCCGCTGCCCGGTGATGGGCTGCGCAGCGCAAGGATACGTTCAGCAGCATTTGCTAGAGGTTGACGTTAGATTGCAGCAGCAGCTCATTCAAACCCGGTCGGTGT ] [+] EMBL BM595288 [ ccgGAAACGAGTATAGATCGGAAGAAACCCCAGGTCCGGGGGCACAAACGCTACAAGGACTTTGTGCAGTACGCCAAACCGCTGCTCAATCCATCGCTGCAAGGTCAGCCCTCCCAAAACGACAATGACGATGATGATGATGGCGATTTGGTGATGGAGGCCGACGTGGGCAATATGGTTGACCCGATCTCGAAGCGCCCGCTGGAGGTGCCGGTGCGCAACAAGCAGTGCAATCATGTGTACGAAAAGAGCGTCATCGAGAATCTGTTGAAGCAGAACCCGCGTACCCGCTGCCCGGTGATGGGCTGCGCAGCGCAAGGATACGTTCAGCAGCATTTGCTAGAGGTTGACGTTAGATTGCAGCAGCAGCTCATTCAAACCCGGTCGGTGTTTACCTAAAATCGTGATCAGTGGGAGTTGAGTTTTAGTGCCGATGAGTGCGTTTGTTACACGGGTGCACCATAGACCTCCAATATGGACATATTCTCTCAGATTTTCGT] consensusID : consensus_8039#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 598 fasta sequence [GAATNGCCCGAGGTCAACGGCGTCGAAAATGAACATGCTTGAAGCCAACATGCGTAAGGTTAGCGACAGCCTGAACAGCACCGTCCGATTGGCGGCAGAGTTTGGTGATGAGTCATTAAAAGATTTAAAGCTTTATACCAGTCTGGTGGAAAAGCTGTGCGAAATTGACAGCAAAATGAACACCCACCGGAAGGCGCTAGCGGAATCCTACGCAGAGCAAACCGTGGAATGCTTCGACCAGCGCTATGAAACGAGTATAGATCGGAAGAAACCACAGGTCCGTGGGCATAAACGCTACAAGGACTTTGTGCAGTACGCCAAACCGCTGCTCAATCCATCGCTGCAAGGCCAGCCCTCCCAAAACGACAATGACGATGATGATGATGGCGATTTGGTGATGGAGGCCGACGTGGGCAATATGGTCGACCCGATCTCGAAGCGCCCGCTGGAGGTGCCGGTGCGCAACAAGCAGTGCAATCACGTGTACGAAAAGAGCGTCATCGAGAATCTGTTGAAGCAGAACCCGCGTACCCGCTGCCCGGTGATGGGCTGCGCAGCGCAAGGATACGTTCAGCAGCATTTGCTANCAGGTTGACGT] [+] EMBL AL934658 [GAATNGCCCGAGGTCAACGGCGTCGAAAATGAACATGCTTGAAGCCAACATGCGTAAGGTTAGCGACAGCCTGAACAGCACCGTCCGATTGGCGGCAGAGTTTGGTGATGAGTCATTAAAAGATTTAAAGCTTTATACCAGTCTGGTGGAAAAGCTGTGCGAAATTGACAGCAAAATGAACACCCACCGGAAGGCGCTAGCGGAATCCTACGCAGAGCAAACCGTGGAATGCTTCGACCAGCGCTATGAAACGAGTATAGATCGGAAGAAACCACAGGTCCGTGGGCATAAACGCTACAAGGACTTTGTGCAGTACGCCAAACCGCTGCTCAATCCATCGCTGCAAGGCCAGCCCTCCCAAAACGACAATGACGATGATGATGATGGCGATTTGGTGATGGAGGCCGACGTGGGCAATATGGTCGACCCGATCTCGAAGCGCCCGCTGGAGGTGCCGGTGCGCAACAAGCAGTGCAATCACGTGTACGAAAAGAGCGTCATCGAGAATCTGTTGAAGCAGAACCCGCGTACCCGCTGCCCGGTGATGGGCTGCGCAGCGCAAGGATACGTTCAGCAGCATTTGCTANCAGGTTGACGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8039#0 TCCAGCAAGACAGCAAAGCTTCTTTTCGCCGTTTTGTTGTTGTTATTCAACAATTGATAT 60 consensus_8039#1 ------------------------------------------------------------ consensus_8039#0 TCGTTATTTGTTTATCTGTTTTGATGCCACATCTTTTTCTCAATTAGTGGTTTTGCAGAG 120 consensus_8039#1 ------------------------------------------------------------ consensus_8039#0 AACAAAAATGGGGCCAAATTTTCATCATCGAAAATATTCCAGAAATTAATTCGATCGATT 180 consensus_8039#1 ------------------------------------------------------------ consensus_8039#0 TCACCCACCCACGATAGAGCAAGAAAATGTTCAGTATCGACAATCCGATCAAGCAAGCTC 240 consensus_8039#1 ------------------------------------------------------------ consensus_8039#0 CAAGCCGAATTCGATCCTATCCTGTCACCGGTTGGAATGTTGATGTTCCGAAAGGCGGTT 300 consensus_8039#1 ------------------------------------------------------------ consensus_8039#0 AAAATTAGTTGATAAACAAAAGCGCTCGCTCTCTGCGGCAGTTCGTTTGCGCGTTGCACT 360 consensus_8039#1 ------------------------------------------------------------ consensus_8039#0 TTTTTTGTTGCGATTTGGCGTCCTTGTTAATTTTAGCAACAAGTGTTTTGTATGTTTTGT 420 consensus_8039#1 ------------------------------------------------------------ consensus_8039#0 TTTGCATCGCGTGATAATAATAGCAATCGGCGTCGAAAATGAACATGCTTGAAGCCAACA 480 consensus_8039#1 ---GAATNGCCCGAGGTCAA-------CGGCGTCGAAAATGAACATGCTTGAAGCCAACA 50 * ** ** ** ** ********************************* consensus_8039#0 TGCGTAAGGTTAGCGATAGCCTGAACAGCACCGTCCGATTGGCGGCAGAGTTTGGTGATG 540 consensus_8039#1 TGCGTAAGGTTAGCGACAGCCTGAACAGCACCGTCCGATTGGCGGCAGAGTTTGGTGATG 110 **************** ******************************************* consensus_8039#0 AATCATTAAAAGATTTAAAGCTTTACACCAGTCTGGTGGAAAAGCTGTGCGAAATTGACA 600 consensus_8039#1 AGTCATTAAAAGATTTAAAGCTTTATACCAGTCTGGTGGAAAAGCTGTGCGAAATTGACA 170 * *********************** ********************************** consensus_8039#0 GCAAAATGAACACCCACCGGAAGGCGCTAGCGGAATCCTACGCAGAGCAAACCGTGGAAT 660 consensus_8039#1 GCAAAATGAACACCCACCGGAAGGCGCTAGCGGAATCCTACGCAGAGCAAACCGTGGAAT 230 ************************************************************ consensus_8039#0 GCTTCGACCAGCGCTATGAAACGAGTATAGATCGGAAGAAACCCCAGGTCCGGGGGCACA 720 consensus_8039#1 GCTTCGACCAGCGCTATGAAACGAGTATAGATCGGAAGAAACCACAGGTCCGTGGGCATA 290 ******************************************* ******** ***** * consensus_8039#0 AACGCTACAAGGACTTTGTGCAGTACGCCAAACCGCTGCTCAATCCATCGCTGCAAGGTC 780 consensus_8039#1 AACGCTACAAGGACTTTGTGCAGTACGCCAAACCGCTGCTCAATCCATCGCTGCAAGGCC 350 ********************************************************** * consensus_8039#0 AGCCCTCCCAAAACGACAATGACGATGATGATGATGGCGATTTGGTGATGGAGGCCGACG 840 consensus_8039#1 AGCCCTCCCAAAACGACAATGACGATGATGATGATGGCGATTTGGTGATGGAGGCCGACG 410 ************************************************************ consensus_8039#0 TGGGCAATATGGTTGACCCGATCTCGAAGCGCCCGCTGGAGGTGCCGGTGCGCAACAAGC 900 consensus_8039#1 TGGGCAATATGGTCGACCCGATCTCGAAGCGCCCGCTGGAGGTGCCGGTGCGCAACAAGC 470 ************* ********************************************** consensus_8039#0 AGTGCAATCATGTGTACGAAAAGAGCGTCATCGAGAATCTGTTGAAGCAGAACCCGCGTA 960 consensus_8039#1 AGTGCAATCACGTGTACGAAAAGAGCGTCATCGAGAATCTGTTGAAGCAGAACCCGCGTA 530 ********** ************************************************* consensus_8039#0 CCCGCTGCCCGGTGATGGGCTGCGCAGCGCAAGGATACGTTCAGCAGCATTTGCTAG-AG 1019 consensus_8039#1 CCCGCTGCCCGGTGATGGGCTGCGCAGCGCAAGGATACGTTCAGCAGCATTTGCTANCAG 590 ******************************************************** ** consensus_8039#0 GTTGACGTTAGATTGCAGCAGCAGCTCATTCAAACCCGGTCGGTGTTTACCTAAAATCGT 1079 consensus_8039#1 GTTGACGT---------------------------------------------------- 598 ******** consensus_8039#0 GATCAGTGGGAGTTGAGTTTTAGTGCCGATGAGTGCGTTTGTTACACGGGTGCACCATAG 1139 consensus_8039#1 ------------------------------------------------------------ consensus_8039#0 ACCTCCAATATGGACATATTCTCTCAGATTTTCGT 1174 consensus_8039#1 ----------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||