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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8045#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1423 fasta sequence
[CCGGATTGTTTTGGTCTTTGCTCCTCCGGTCGCCTTACGGAGCCGCGGGATAGGCCGCCGAGTCAGCTGTTGACAATTGTCCGCATGGTGGTGGTGGCAGTGGCAAGCTTTCTCCTTATTAGTTAATTAAAACCAAACGAAGCTGTCAACATGCGTGAGCTGTACGACTTAATAACGGGCAAGAATGTTGACCATCAAACGTTCGAAAGCGTCTCGGCGATCATTCAGAAACGTTTCACCAATGCGGGCAACTGGTTCCAGGTCGGATCAGCGCTTGCTTTGCTGCTGCTGCAGAACGATCTCGCCCTTCCCTTTCACCGGCTGGCAGGGATCTACGTGTTGTACGACATCCGCCGCAAGGAGCAGGCGGAATCACCCTTCTTCCTGTTTTTGGCCCGCTTCCTAGAACCGTTCGGTGGACTGCTGCCGGCCAACAGCAGCACCCCCGCACAGATGGTGGAGCTGAAGTTCATTCATCTGCTACTATCGAACGGTGACCCAGACATTGACAAAAAGTCACCCCGCCTGTTCTGCCAAGCGTTTGCCGCAATGCCCACCCCGGTCGGGCCGGCCGAAATTGCGTACGTAAAGGCGAAGGCAGCGGAACGGCTGAAAGATTTCCCCCTCACCGTGCGCTCCAATGTGGCCAACATCATTCCCGCCCTGCCCGTGCTGCCTGGCCGCGAACCGGCACTGAAAAACTACACCGGAGCGGCCATCGAGGAGCTGGTGAACGGGATGACGGCGAACCCGAGCAATCCGCTGCTGAACGCGCTCGGTCCCACGTTCATGTCCGTGGCGCCACCGCTGCTCACGTGTGAGGATGAGCTGATCTGGCTCGATCTGGGCAGCCCCTCGTACCACAAGCCGGTGTACAATAGCTGCAGCGATGCGGAACCAACGCCGGACAAGTGCCTGCAGACGCTGCTGGACCAATCGTTCCGGCAGGCGCTCAGCATTGCCGACCAGCAGACGCTGGTGAACGAGCTGGAGAAGGACACGCAGCAGACGCACCTGTCGTGCGTCACGCCGGAAAAGCTCCCGAACCTGATCGAATACAACCCGACGATTGCGATCGAAATTCTGATGCGTATGCTGAAAACGCGCCACATCGATGCGTACCTGGACGTGATCGTCGACATGTAGCTGTCGCTGCACTCGATGGAGGTGGTGAACCGGCTGACCACGTCGGTCGATCTGCCGGTGCACTTCGTGCATCTGTACATCGTGAACAGCATCGGCACGTGCTCGACGATCCGGGACAAGTACATGCAGAACCGGCTGGTACGGTTGGTGTGCGTGTTCCTGCAGAGCCTGATCCGGAACAAGATCATCGACGTGAAGCAGCTGTACATCGAGATCGAAGCGTTTTGCATCGAGTTTAGCCGGATACGGGAGGCGGCCGCACTGTACCGTTTGCTGA]
[+] EMBL BM578727 [CCGGATTGTTTTGGTCTTTGCTCCTCCGGTCGCCTTACGGAGCCGCGGGATAGGCCGCCGAGTCAGCTGTTGACAATTGTCCGCATGGTGGTGGTGGCAGTGGCAAGCTTTCTCCTTATTAGTTAATTAAAACCAAACGAAGCTGCCAACATGCGTGAGCTGTACGACTTAATAACGGGCAAGAATGTTGACCATCAAACGTTCGAAAGCGTCTCGGCGATCATTCAGAAACGTTTCACCAATGCGGGCAACTGGTTCCAGGTCGGATCAGCGCTTGCTTTGCTGCTGCTGCAGAACGATCTCGCCCTTCCCTTTCACCGGCTGGCAGGGATCTACGTGCTGTACGACATCCGCCGCAAGGAGCAGGCGGAATCACCCTTCTTCCTGTTTTTGGCCC ]
[+] EMBL BX623101 [ TGGTGTTTGCTCCTCCGGTCGCCTTACGGAGCCGCGGGATAGGCCGCCGAGTCAGCTGTTGACAATTGTCCGCATGGTGGTGGTGGCAGTGGCAAGCTTTCTCCTTATTAGTTAATTAAAACCAAACGAAGCTGTCAACATGCGTGAGCTGTACGACTTAATAACGGGCAAGAATGTTGACCATCAAACGTTCGAAAGCGTCTCGGCGATCATTCAGAAACGTTTCACCAATGCGGGCAACTGGTTCCAGGTCGGATCAGCGCTTGCTTTGCTGCTGCTGCAGAACGATCTCGCCCTTCCCTTTCACCGGCTGGCAGGGATCTACGTGTTGTACGACATCCGCCGCAAGGAGCAGGCGGAATCACCCTTCTTCCTGTTTTTGGCCCGCTTCCTAGAACCGTTCGGTGGACTGCTGCCGGCCAACAGCAGCACCCCCGCACAGATGGTGGAGCTGAAGTTCATTCATCTGCTACTATCGAACGGTGACCCAGACATTGACAAAAAGTCACCCCGCCTGTTCTGCCAAGCGTTTGCCGCAATGCCCACCCCGGTCGGGCCGGCCGAAATTGCGTACGTAAAGGCGAAGGCAGCGGAACGGCTGAAAGATTTCCCCCTCACCGTGCGCTCCAATGTGGNCAACATCATTCCCGCCCTGCCCGTGCTGCCTGGNCGCGAACCGGCACTGAAAAACTACACCGGAGCGGCCATCGAGGAGCTGGTGAACGGGATGACGGCGAACCCGAGCAATCCGCTGCT ]
[+] EMBL CNS08FE1 [ CGGTCGCCTTACGGA CCGCGGGATAGGCCGCCGAGTCAGCTGTTGACAATTGTCCGCATGGTGGTGGTGGCAGTGGCAAGCTTTCTCCTTATTAGTTAATTAAAACCAAACGAAGCTGTCAACATGCGTGAG TGTACGACTTAATAACGGGCAAGAATGTTGACCATCAAACGTTCGAAAGCGTCTCGGCGATCATTCAGAAACGTTTCACCAATGCGGGCAACTGGTTCCAGGTCGGATCAGCGCTTGCTTTGCTGCTGCTGCAGAACGATCTCGCCCTTCCCTTTCACCGGCTGGCAGGGATCTACGTGTTGTACGACATCCGCCGCAAGGAGCAGGCGGAATCACCCTTCTTCCTGTTTTTGGCCCGCTTCCTAGAACCGTTCGGTGGACTGCTGCCGGCCAACAGCAGCACCCCCGCACAGATGGTGGAGCTGAAGTTCATTCATCTGCTACTATCGAACGGTGACCCAGACATTGACAAAAAGTCACCCCGCCTGTTCTGCCAAGCGTTTGCCGCAATGCCCACCCCGGTCGGGCCGGCCGAAATTGCGTACGTAAAGGCGAAGGCAGCGGAACGGCTGAAAGATTTCCCCCTCACCGTGCGCTCCAATGTGGCCAACATCATTCCCGCCCTGCCCGTGCTGCCTGGCCGCGAACCGGCACTGAAAAACTACACCGGAGCGGCCATCGAGGAGCTGGTGAACGGGATGACGGCGAACCCGAGCAATCCGCTGCTGAACGCGCTCGGTCCCACGTTCATGTCCGTGGCGCCACCGCTGCTCACGTGTGAGGATGAGCTGATCTGGCTCGATCTGGGCAGCCCCTCGTACCACAAGCCGGTGTACAATAGCTGCAGCGATGCGGAACCAACGCCGGACAAGTGCCTGCAGACGCTGCTGGACCAATCGTTCCGGCAGGCGCTCAGCATTGCCGACCAGC ]
[+] EMBL CNS09056 [ AAGCTGTCAACATGCGTGA CTGTACGACTTAATAACGGGCAAGAATGTTGACCATCAAACGTTCGAAAGCGTCTCGGCGATCATTCAGAAACGTTTCACCAATGCGGGCAACTGGTTCCAGGTCGGATCAGCGCTTGCTTTGCTGCTGCTGCAGAACGATCTCGCCCTTCCCTTTCACCGGCTGGCAGGGATCTACGTGTTGTACGACATCCGCCGCAAGGAGCAGGCGGAATCACCCTTCTTCCTGTTTTTGGCCCTCTTGCTA ]
[+] EMBL BM617539 [ ccgAGCACCCCCGCACAGATGGTGGAGCTGAAGTTCATTCATCTGCTACTATCGAACGGTGATCCAGACATTGACAAAAAGTCACCCCGCCTGTTCTGCCAAGCGTTTGCCGCAATGCCCACCCCGGTCGGGCCGGCCGAAATTGCGTACGTAAAGGCGAAGGCAGCGGAACGGCTGAAAGATTTCCCCCTCACCGTGCGCTCCAATGTGGCCAACATCATTCCCGCCCTGCCCGTGCTGCCTGGCCGCGAACCGGCACTGAAAAACTACACCGGAGCGGCCATCGAGGAGCTGGTGAACGGGATGACGGCGAACCCGAGCAATCCGCTGCTGAACGCGCTCGGTCCCACGTTCATGTCCGTGGCGCCACCGCTGCTCACGTGTGAGGATGAGCTGATCTGGCTCGATCTGGGCAGCCCCTCGTACCACAAGCCGGTGTACAATAGCTGCAGCGATGCGGAACCAACGCCGGACAAGTGTCTGCAGACGCTGCTGGACCAATCGTTCCGGCAGGCGCTCAGCATTGCCGACCAGCAGACGCTGGTGAACGAGCTGGAGAAGGACACGCAGCAGACGCACCTGTCGTGCGTCACGCCGGAAAAGCTCCCGAACCTGATCGAATACAACCCGACGATTGCGATCGAAATTCTGATGCGTATGCTGAAAACGCGCC ]
[+] EMBL BX608497 [ CGTGCGCTCCAATGTGGCCAACATCATTCCCGCCCTGCCCGTGCTGCCTGGCCGCGAACCGGCACTGAAAAACTACACCGGAGCGGCCATCGAGGAGCTGGTGAACGGGATGACGGCGAACCCGAGCAATCCGCTGCTGAACGCGCTCGGTCCCACGTTCATGTCCGTGGCGCCACCGCTGCTCACGTGTGAGGATGAGCTGATCTGGCTCGATCTGGGCAGCCCCTCGTACCACAAGCCGGTGTACAATAGCTGCAGCGATGCGGAACCAACGCCGGACAAGTGCCTGCAGACGCTGCTGGACCAATCGTTCCGGCAGGCGCTCAGCATTGCCGACCAGCAGACGCTGGTGAACGAGCTGGAGAAGGACACGCAGCAGACGCACCTGTCGTGCGTCACGCCGGAAAAGCTCCCGAACCTGATCGAATACAACCCGACGATTGCGATCGAAATTCTGATGCGTATGCTGAAAACGCGCCACATCGATGCGTACCTGGACGTGATCGTCGACATGTAGCTGTCGCTGCACTCGATGGAGGTGGTGAACCGGCTGACCACGTCGGTCGATCTGCCGGTGCACTTCGTGCATCTGTACATCGTGAACAGCATCGGCACGTGCTCGACGATCCGGGACAAGTACATGCAGAACCGGCTGGTACGGTTGGTGTGCGTGTTCCTGCAGAGCCTGATCCGGAACAAGATCATCGACGTGAAGC ]
[-] EMBL CNS09057 [ TGCATCTGTACATCGTGAACAGCATCGGCACGTGCTCGACGATCCGGGACAAGTACATGCAGAACCGGCTGGTACGGTTGGTGTGCGTGTTCCTGCAGAGCCTGATCCGGAACAAGATCATCGACGTGAAGCAGCTGTACATCGAGATCGAAGCGTTTTGCATCGAGTTTAGCCGGATACGGGAGGCGGCCGCACTGTACCGTTTGCTGA]
[-] EMBL CNS08FE2 [ TGTACATCGTGAACAGCATCGGCACGTGCTCGACGATCCGGGAAAAGTACATGCAGAACCGGCTGGTACGGTTGGTGTGCGTGTTCCTGCAGAGCCTGATCCGGAACAAGATCATCGACGTGAAGCAGCTGTACATCGAGATCGAAGCGTTTTGCATCGAGTTTAGCCGGATACGGGAGGCGGCCGCACTGTACCGGTTG ]
consensusID : consensus_8045#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 110 fasta sequence
[CAGAATCCCCCGAGGTNAACGAAGGGGATGTTGGTGTATGCTCCTCCGGTCGCCTTACGGAGCCGCGGGATAGCCGCCGAGTCAGCTGTTGGACAATTGTCGCCAAATTT]
[+] EMBL AL933401 [CAGAATCCCCCGAGGTNAACGAAGGGGATGTTGGTGTATGCTCCTCCGGTCGCCTTACGGAGCCGCGGGATAGCCGCCGAGTCAGCTGTTGGACAATTGTCGCCAAATTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8045#0 --------------------CCGGATTGTTTTGGTCTTTGCTCCTCCGGTCGCCTTACGG 40
consensus_8045#1 CAGAATCCCCCGAGGTNAACGAAGGGGATGTTGGTGTATGCTCCTCCGGTCGCCTTACGG 60
* * ***** * **********************
consensus_8045#0 AGCCGCGGGATAGGCCGCCGAGTCAGCTGTTG-ACAATTGTCCGCATGGTGGTGGTGGCA 99
consensus_8045#1 AGCCGCGGGATAG-CCGCCGAGTCAGCTGTTGGACAATTGTCGCCAAATTT--------- 110
************* ****************** ********* ** *
consensus_8045#0 GTGGCAAGCTTTCTCCTTATTAGTTAATTAAAACCAAACGAAGCTGTCAACATGCGTGAG 159
consensus_8045#1 ------------------------------------------------------------
consensus_8045#0 CTGTACGACTTAATAACGGGCAAGAATGTTGACCATCAAACGTTCGAAAGCGTCTCGGCG 219
consensus_8045#1 ------------------------------------------------------------
consensus_8045#0 ATCATTCAGAAACGTTTCACCAATGCGGGCAACTGGTTCCAGGTCGGATCAGCGCTTGCT 279
consensus_8045#1 ------------------------------------------------------------
consensus_8045#0 TTGCTGCTGCTGCAGAACGATCTCGCCCTTCCCTTTCACCGGCTGGCAGGGATCTACGTG 339
consensus_8045#1 ------------------------------------------------------------
consensus_8045#0 TTGTACGACATCCGCCGCAAGGAGCAGGCGGAATCACCCTTCTTCCTGTTTTTGGCCCGC 399
consensus_8045#1 ------------------------------------------------------------
consensus_8045#0 TTCCTAGAACCGTTCGGTGGACTGCTGCCGGCCAACAGCAGCACCCCCGCACAGATGGTG 459
consensus_8045#1 ------------------------------------------------------------
consensus_8045#0 GAGCTGAAGTTCATTCATCTGCTACTATCGAACGGTGACCCAGACATTGACAAAAAGTCA 519
consensus_8045#1 ------------------------------------------------------------
consensus_8045#0 CCCCGCCTGTTCTGCCAAGCGTTTGCCGCAATGCCCACCCCGGTCGGGCCGGCCGAAATT 579
consensus_8045#1 ------------------------------------------------------------
consensus_8045#0 GCGTACGTAAAGGCGAAGGCAGCGGAACGGCTGAAAGATTTCCCCCTCACCGTGCGCTCC 639
consensus_8045#1 ------------------------------------------------------------
consensus_8045#0 AATGTGGCCAACATCATTCCCGCCCTGCCCGTGCTGCCTGGCCGCGAACCGGCACTGAAA 699
consensus_8045#1 ------------------------------------------------------------
consensus_8045#0 AACTACACCGGAGCGGCCATCGAGGAGCTGGTGAACGGGATGACGGCGAACCCGAGCAAT 759
consensus_8045#1 ------------------------------------------------------------
consensus_8045#0 CCGCTGCTGAACGCGCTCGGTCCCACGTTCATGTCCGTGGCGCCACCGCTGCTCACGTGT 819
consensus_8045#1 ------------------------------------------------------------
consensus_8045#0 GAGGATGAGCTGATCTGGCTCGATCTGGGCAGCCCCTCGTACCACAAGCCGGTGTACAAT 879
consensus_8045#1 ------------------------------------------------------------
consensus_8045#0 AGCTGCAGCGATGCGGAACCAACGCCGGACAAGTGCCTGCAGACGCTGCTGGACCAATCG 939
consensus_8045#1 ------------------------------------------------------------
consensus_8045#0 TTCCGGCAGGCGCTCAGCATTGCCGACCAGCAGACGCTGGTGAACGAGCTGGAGAAGGAC 999
consensus_8045#1 ------------------------------------------------------------
consensus_8045#0 ACGCAGCAGACGCACCTGTCGTGCGTCACGCCGGAAAAGCTCCCGAACCTGATCGAATAC 1059
consensus_8045#1 ------------------------------------------------------------
consensus_8045#0 AACCCGACGATTGCGATCGAAATTCTGATGCGTATGCTGAAAACGCGCCACATCGATGCG 1119
consensus_8045#1 ------------------------------------------------------------
consensus_8045#0 TACCTGGACGTGATCGTCGACATGTAGCTGTCGCTGCACTCGATGGAGGTGGTGAACCGG 1179
consensus_8045#1 ------------------------------------------------------------
consensus_8045#0 CTGACCACGTCGGTCGATCTGCCGGTGCACTTCGTGCATCTGTACATCGTGAACAGCATC 1239
consensus_8045#1 ------------------------------------------------------------
consensus_8045#0 GGCACGTGCTCGACGATCCGGGACAAGTACATGCAGAACCGGCTGGTACGGTTGGTGTGC 1299
consensus_8045#1 ------------------------------------------------------------
consensus_8045#0 GTGTTCCTGCAGAGCCTGATCCGGAACAAGATCATCGACGTGAAGCAGCTGTACATCGAG 1359
consensus_8045#1 ------------------------------------------------------------
consensus_8045#0 ATCGAAGCGTTTTGCATCGAGTTTAGCCGGATACGGGAGGCGGCCGCACTGTACCGTTTG 1419
consensus_8045#1 ------------------------------------------------------------
consensus_8045#0 CTGA 1423
consensus_8045#1 ----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||