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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8046#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 897 fasta sequence
[CACAATCCCCGACGTTAAATANTACTATCTTTCTCNGCCCATCACATTGCTGGGCAGACAATATGCACTAGCCGATCATGGAGTGGAAGAGTTCGACGATACCGCACGATATGCAATCGAAGGTAGGGTGTATCCGCCCGAATTGTATGGAGGAGATCCGGATCTTGCCT-GGCAGCTAGATACACAAATAT-CCATCAACGGTGGTGAATACAAGGGATTTCTTCGTGAAGACGGCAGCTTTCTGATTAGCTCAGTGCCATCAGGTAGCTATGTGGTCGAGATCGTAAACCCTGACTATTTCTACGAACCCGTGAGGGTAGAAATCAATCCAAAAGGAAAGTTTCGGGCTCGTAAACTGAATTACGTT-CAGCCATCTCAAGTGCTGCAGCTGCCCTATCCCTTGAAGTTGAAGGCGCTTACT-CGATTCCGGTACTTCCAGCAACGGGAGCAA-TGGAA-GATAACTGATTTTCTGTTTAATCCGATGGTGTTA-ATGATGATTCTTCCTCTGGGTATCATGCTCATTCTGCCGAAAATCATGAGCGATCCAGAGACGAAGAAGG--AAA--TGGAAAATTTG-AACCTATCAAA-GATGACGA-ATGATTTGCCNTGAAATNCAGTGAACAATTGCTAAACGNTTCCTACCTTNCAACGAAGCGAGATCTGCGGNCAGACCCCTGCACCCCACACCGTGACAACAACNAGACCAAAGTCCCAAACACACACACAAGCACAACACACACTTCTTAACCCCTGNTTTCACCACCTACATGTCNATGCCCCTGCTCCCAAACACTTGCCAANTTATCACATANTAAAAANCNTTTTCCNCACNTGNTCCTCATATACATGACTTAAATTCCAATTCTCNCCTCACGCACCACTTTTCGNACCAACATATAT]
[+] EMBL AL933297 [CACAATCCCCGACGTTAAATANTACTATCTTTCTCNGCCCATCACATTGCTGGGCAGACAATATGCACTANCCGATCATGGAGTGGAAGAGTTCGACGATACCGCACGATATGCAATCGAANGTAGGGTGTATCCGCCCGAATTGTATGGAGGAGATCCGGATCTTGCCTGGGCAGCTAGATACACAAATATACCATCAACGGTGGTGAATACAAGGGATTTCTTCGTGAAGACGGCAGCTTTCTGATTAGCTCAGTGCCATCAGGTAGCTATGTGGTCGAGATCGTAAACCCTGACTATTTCTACGAACCCGTGAGGGTAGAAATCAATCCAAAAGGAAAGTTTCGGGCTCGTAAACTGAATTACGTTACAGCCATCTCAAGTGCTGCAGCTGCCCTATCCCTTGAAGTTGAAGGCGCTTACTACGATTCCGGTACTTCCAGCAACGGGAGCAATTGGAAGGATAACTGATTNTCTG TNAATCCGATGGTGTNANATGATGATTCTTCCTCTGGGTATCATGCTCATTCTGCCGAAAATCATGAGCGATCCAGAGACGAAGAAGGGAAAACTTGGAAAATTTGAAACCTATCAAACGATGACGANATGATTTGCCNTGAAATNCAGTGAACAATTGCTAAACGNTTCCTACCTTNCAACGAAGCGAGATCTGCGGNCAGACCCCTGCACCCCACACCGTGACAACAACNAGACCAAAGTCCCAAACACACACACAAGCACAACACACACTTCTTAACCCCTGNTTTCACCACCTACATGTCNATGCCCCTGCTCCCAAACACTTGCCAANTTATCACATANTAAAAANCNTTTTCCNCACNTGNTCCTCATATACATGACTTAAATTCCAATTCTCNCCTCACGCACCACTTTTCGNACCAACATATAT]
[+] EMBL BX620975 [ gttATCACATTGCTGGGCAGACAATATGCACTAGCCGATCATGGAGTGGAAGAGTTCGACGATACCGCACGATATGCAATCGAAGGTAGGGTGTATCCGCCCGAATTGTATGGAGGAGATCCGGATCTTGCCT GGCAGCTAGATACACAAATAT CCATCAACGGTGGTGAATACAAGGGATTTCTTCGTGAAGACGGCAGCTTTCTGATTAGCTCAGTGCCATCAGGTAGCTATGTGGTCGAGATCGTAAACCCTGACTATTTCTACGAACCCGTGAGGGTAGAAATCAATCCAAAAGGAAAGTTTCGGGCTCGTAAACTGAATTACGTT CAGCCATCTCAAGTGCTGCAGCTGCCCTATCCCTTGAAGTTGAAGGCGCTTACT CGATTCCGGTACTTCCAGCAACGGGAGCAA TGGAA GATAACTGATTTTCTGTTTAATCCGATGGTGTTA ATGATGATTCTTCCTCTGGGTATCATGCTCATTCTGCCGAAAATCATGAGCGATCCAGAGACGAAGAAGG AAA TGGAAAATTTG AACCTATCAAA GATGACGA ATGATTTGCCt ]
[+] EMBL BX611506 [ TATGCACTAGCCGATCATGGAGTGGAAGAGTTCGACGATACCGCACGATATGCAATCGAAGGTAGGGTGTATCCGCCCGAATTGTATGGAGGAGATCCGGATCTTGCCT GGCAGC AGATACACAAATAT CCATCAACGGTGGTGAATACAAGGGATTTCTTCGTGAAGACGGCAGCTTTCTGATTAGCTCAGTGCCATCAGGTAGCTATGTGGTCGAGATCGTAAACCCTGACTATTTCTACGAACCCGTGAGGGTAGAAATCAATCCAAAAGGAAAGTTTCGGGCTCGTAAACTGAATTACGTT CAGCCATCTCAAGTGCTGCAGCTGCCCTATCCCTTGAAGTTGAAGGCGCTTACT CGATTCCGGTACTTCCAGCAACGGGAGCAA TGGAA GATAACTGATTTTCTGTTTAATCCGATGGTGTTA ATGATGATTCTTCCTCTGGGTATCATGCTCATTCTGCCGAACATCATGAGCGATCCAGAGACGAAGAAGG AAA TGGAAAATTTG AACCTATCAAA GATGACGA ATG ]
consensusID : consensus_8046#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 844 fasta sequence
[CCGGAAACGGTGTCACGGAAATTTGCGGATAGAGCTGACACAAGGCAAAAATCAATTACAGAGAGTCACGAGCTTGGATTTAATAATGAAAATAGTACTATCTTTATTGGTTATCACATTGCTGGGCAGGCAATATGCACTAGCCGATCATGGAGTGGAAGAGTTCGACGATACCGCACGATATGCAATCGAAGGTAGGGTGTATCCGCCCGAATTGTATGGAGGAGATCCGGATCTTGCCTGGCAGCTAGATACACAAATATCCATCAACGGTGGTGAATACAAGGGATTTCTTCGTGAAGACGGCAGCTTTCTGATTAGCTCAGTGCCATCAGGTAGCTATGTGGTCGAGATCGTAAACCCCGACTATTTCTACGAACCCGTGAGGGTAGAAATCAATCCAAAAGGAAAGTTTCGGGCTCGTAAACTGAATTACGTTCAGCCATCTCAAGTGCTGCAGCTGCCCTATCCCTTGAAGTTGAAGGCGCTTACTCGATTCCGGTACTTCCAGCAACGGGAGCAATGGAAGATAACTGATTTTCTGTTTAATCCGATGGTGTTAATGATGATTCTTCCTCTGGGTATCATGCTCATTCTGCCGAAAATCATGAGCGATCCAGAGACGAAGAAGGAAATGGAAAA-TTTGAACTTATCAAAGATGACGAATGATTTGCCTGAATTCAGTGAAATGCTAACGTCCTACTTCACGAGCGGTTCTGCGGCAGCCGCTGCAGCCAAAGCGGGAAAAGACAAAGACAAAGCCAAACCAAAGCAAAGCAAAAAG-AAAATTAACAATCCATGTATCGAGCAAGCTAATGTCAATGCTCGTTGCTACAAATAAATT]
[+] EMBL BM611396 [CCGGAAACGGTGTCACGGAAATTTGCGGATAGAGCTGACACAAGGCAAAAATCAATTACAGAGAGTCACGAGCTTGGATTTAATAATGAAAATAGTACTATCTTTATTGGTTATCACATTGCTGGGCAGGCAATATGCACTAGCCGATCATGGAGTGGAAGAGTTCGACGATACCGCACGATATGCAATCGAAGGTAGGGTGTATCCGCCCGAATTGTATGGAGGAGATCCGGATCTTGCCTGGCAGCTAGATACACAAATATCCATCAACGGTGGTGAATACAAGGGATTTCTTCGTGAAGACGGCAGCTTTCTGATTAGCTCAGTGCCATCAGGTAGCTATGTGGTCGAGATCGTAAACCCCGACTATTTCTACGAACCCGTGAGGGTAGAAATCAATCCAAAAGGAAAGTTTCGGGCTCGTAAACTGAATTACGTTCAGCCATCTCAAGTGCTGCAGCTGCCCTATCCCTTGAAGTTGAAGGCGCTTACTCGATTCCGGTACTTCCAGCAACGGGAGCAATGGAAGATAACTGATTTTCTGTTTAATCCGATGGTGTTAATGATGATTCTTCCTCTGGGTATCATGCTCATTCTGCCGAAAATCATGAGCG ]
[+] EMBL BM580664 [ ccgCGGAAATTTGCGGATAGAGCTGACACAAGGCAAAAATCAATTACAGAGAGTCACGAGCTTGGATTTAATAATGAAAATAGTACTATCTTTATTGGTTATCACATTGCTGGGCAGGCAATATGCACTAGCCGATCATGGAGTGGAAGAGTTCGACGATACCGCACGATATGCAATCGAAGGTAGGGTGTATCCGCCCGAATTGTATGGAGGAGATCCGGATCTTGCCTGGCAGCTAGATACACAAATATCCATCAACGGTGGTGAATACAAGGGATTTCTTCGTGAAGACGGCAGCTTTCTGATTAGCTCAGTGCCATCAGGTAGCTATGTGGTCGAGATCGTAAACCCCGACTATTTCTACGAACCCGTGAGGGTAGAAATCAATCCAAAAGGAAAGTTTCGGGCTCGTAAACTGAATTACGTTCAGCCATCTCAAGTGCTGCAGCTGCCCTATCCCTTGAAGTTGAAGGCGCTTACTCGATTCCGGTACTTCCAGCAACGGGAGCAATGGAAGATAACTGATTTTCTGTTTAATCCGATGGTGTTAATGATGATTCTTCCTCTGGGTATCATGCTCATTCTGCCGAAAATCATGAGCGATCCAGAGACGAAGAAGGAAATGGAAAA TTTGAACTTATCAAAGATGACGAATGATTTGCCTGAATTCAGTGAAATGCTAACGTCCTACTTCACGAGCGGTTCTGCGG ]
[+] EMBL BM655591 [ ccgCAATTACAGAGAGTCACGAGCTTGGATTTAATAATGAAAATAGTACTATCTTTATTGGTTATCACATTGCTGGGCAGGCAATATGCACTAGCCGATCATGGAGTGGAAGAGTTCGACGATACCGCACGATATGCAATCGAAGGTAGGGTGTATCCGCCCGAATTGTATGGAGGAGATCCGGATCTTGCCTGGCAGCTAGATACACAAATATCCATCAACGGTGGTGAATACAAGGGATTTCTTCGTGAAGACGGCAGCTTTCTGATTAGCTCAGTGCCATCAGGTAGCTATGTGGTCGAGATCGTAAACCCCGACTATTTCTACGAACCCGTGAGGGTAGAAATCAATCCAAAAGGAAAGTTTCGGGCTCGTAAACTGAATTACGTTCAGCCATCTCAAGTGCTGCAGCTGCCCTATCCCTTGAAGTTGAAGGCGCTTACTCGATTCCGGTACTTCCAGCAACGGGAGCAATGGAAGATAACTGATTTTCTGTTTAATCCGATGGTGTTAATGATGATTCTTCCTCTGGGTATCATGCTCATTCTGCCGAAAATCATGAGCGATCCAGAGACGAAGAAGGAAATGGAAAATTTTGAACTTATCAAAGATGACGAATGATTTGCCTGAATTCAGTGAAATGC ]
[+] EMBL BM616375 [ ccgGGAGTGGAAGAGTTCGACGATACCGCACGATATGCAATCGAAGGTAGGGTGTATCCGCCCGAATTGTATGGAGGAGATCCGGATCTTGCCTGGCAGCTAGATACACAAATATCCATCAACGGTGGTGAATACAAGGGATTTCTTCGTGAAGACGGCAGCTTTCTGATTAGCTCAGTGCCATCAGGTAGCTATGTGGTCGAGATCGTAAACCCCGACTATTTCTACGAACCCGTGAGGGTAGAAATCAATCCAAAAGGAAAGTTTCGGGCTCGTAAACTGAATTACGTTCAGCCATCTCAAGTGCTGCAGCTGCCCTATCCCTTGAAGTTGAAGGCGCTTACTCGATTCCGGTACTTCCAGCAACGGGAGCAATGGAAGATAACTGATTTTCTGTTTAATCCGATGGTGTTAATGATGATTCTTCCTCTGGGTATCATGCTCATTCTGCCGAAAATCATGAGCGATCCAGAGACGAAGAAGGAAATGGAAAA TTTGAACTTATCAAAGATGACGAATGATTTGCCTGAATTCAGTGAAATGCTAACGTCCTACTTCACGAGCGGTTCTGCGGCTGCCGCTGCAGCCAAAGCGGGAAAAGACAAAGACAAAGCCAAACCAAAGCAAAGCAAAAAG AAAATTAACAATCCATG ]
[+] EMBL BX610807 [ GGCAGCTTTCTGATTAGCTCAGTGCCATCAGGTAGCTATGTGGTCGAGATCGTAAACCCTGACTATTTCTACGAACCCGTGAGGGTAGAAATCAATCCAAAAGGAAAGTTTCGGGCTCGTAAACTGAATTACGTTCAGCCATCTCAAGTGCTGCAGCTGCCCTATCCCTTGAAGTTGAAGGCGCTTACTCGATTCCGGTACTTCCAGCAACGGGAGCAATGGAAGATAACTGATTTTCTGTTTAATCCGATGGTGTTAATGATGATTCTTCCTCTGGGTATCATGCTCATTCTGCCGAAAATCATGAGCGATCCAGAGACGAAGAAGGAAATGGAAAA TTTGAACCTATCAAAGATGACGAATGATTTGCCTGAATTCAGTGAAATGCTAACGTCCTACTTCACGAGCGGTTCTGCGGCAGCCGCTGCAGCCAAAGCGGGAAAAGACAAAGACAAAGCCAAACCAAAGCAAAGCAAAAAGAAAAATTAATAATCCATGTATCGAGCAAGCTAATGTCAATGCTCGTTGCTACAAATAAATT]
[+] EMBL BX610808 [ ATTAGCTCAGTGCCATCAGGTAGCTATGTGGTCGAGATCGTAAACCCTGACTATTTCTACGAACCCGTGAGGGTAGAAATCAATCCAAAAGGAAAGTTTCGGGCTCGTAAACTGAATTACGTTCAGCCATCTCAAGTGCTGCAGCTGCCCTATCCCTTGAAGTTGAAGGCGCTTACTCGATTCCGGTACTTCCAGCAACGGGAGCAATGGAAGATAACTGATTTTCTGTTTAATCCGATGGTGTTAATGATGATTCTTCCTCTGGGTATCATGCTCATTCTGCCGAAAATCATGAGCGATCCAGAGACGAAGAAGGAAATGGAAAA TTTGAACCTATCAAAGATGACGAATGATTTGCCTGAATTCAGTGAAATGCTAACGTCCTACTTCACGAGCGGTTCTGCGGCAGCCGCTGCA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8046#0 ------------------------------------------------------------
consensus_8046#1 CCGGAAACGGTGTCACGGAAATTTGCGGATAGAGCTGACACAAGGCAAAAATCAATTACA 60
consensus_8046#0 ------CACAATCCCCGACGTTA-------AATANTACTATCTTTCTCNGCCCATCACAT 47
consensus_8046#1 GAGAGTCACGAGCTTGGATTTAATAATGAAAATAGTACTATCTTTATTGGTT-ATCACAT 119
*** * * ** * * **** ********** * * *******
consensus_8046#0 TGCTGGGCAGACAATATGCACTAGCCGATCATGGAGTGGAAGAGTTCGACGATACCGCAC 107
consensus_8046#1 TGCTGGGCAGGCAATATGCACTAGCCGATCATGGAGTGGAAGAGTTCGACGATACCGCAC 179
********** *************************************************
consensus_8046#0 GATATGCAATCGAAGGTAGGGTGTATCCGCCCGAATTGTATGGAGGAGATCCGGATCTTG 167
consensus_8046#1 GATATGCAATCGAAGGTAGGGTGTATCCGCCCGAATTGTATGGAGGAGATCCGGATCTTG 239
************************************************************
consensus_8046#0 CCTGGCAGCTAGATACACAAATATCCATCAACGGTGGTGAATACAAGGGATTTCTTCGTG 227
consensus_8046#1 CCTGGCAGCTAGATACACAAATATCCATCAACGGTGGTGAATACAAGGGATTTCTTCGTG 299
************************************************************
consensus_8046#0 AAGACGGCAGCTTTCTGATTAGCTCAGTGCCATCAGGTAGCTATGTGGTCGAGATCGTAA 287
consensus_8046#1 AAGACGGCAGCTTTCTGATTAGCTCAGTGCCATCAGGTAGCTATGTGGTCGAGATCGTAA 359
************************************************************
consensus_8046#0 ACCCTGACTATTTCTACGAACCCGTGAGGGTAGAAATCAATCCAAAAGGAAAGTTTCGGG 347
consensus_8046#1 ACCCCGACTATTTCTACGAACCCGTGAGGGTAGAAATCAATCCAAAAGGAAAGTTTCGGG 419
**** *******************************************************
consensus_8046#0 CTCGTAAACTGAATTACGTTCAGCCATCTCAAGTGCTGCAGCTGCCCTATCCCTTGAAGT 407
consensus_8046#1 CTCGTAAACTGAATTACGTTCAGCCATCTCAAGTGCTGCAGCTGCCCTATCCCTTGAAGT 479
************************************************************
consensus_8046#0 TGAAGGCGCTTACTCGATTCCGGTACTTCCAGCAACGGGAGCAATGGAAGATAACTGATT 467
consensus_8046#1 TGAAGGCGCTTACTCGATTCCGGTACTTCCAGCAACGGGAGCAATGGAAGATAACTGATT 539
************************************************************
consensus_8046#0 TTCTGTTTAATCCGATGGTGTTAATGATGATTCTTCCTCTGGGTATCATGCTCATTCTGC 527
consensus_8046#1 TTCTGTTTAATCCGATGGTGTTAATGATGATTCTTCCTCTGGGTATCATGCTCATTCTGC 599
************************************************************
consensus_8046#0 CGAAAATCATGAGCGATCCAGAGACGAAGAAGGAAATGGAAAATTTGAACCTATCAAAGA 587
consensus_8046#1 CGAAAATCATGAGCGATCCAGAGACGAAGAAGGAAATGGAAAATTTGAACTTATCAAAGA 659
************************************************** *********
consensus_8046#0 TGACGAATGATTTGCCNTGAAATNCAGTGAACAATTGCTAAACGNTTCCTACCTTNCAAC 647
consensus_8046#1 TGACGAATGATTTGCCT--GAATTCAGTGAAA---TGCTAA---CGTCCTACTTCACGA- 710
**************** *** ******* ****** ****** * * *
consensus_8046#0 GAAGCGAGATCTGCGGNCAGACCCCTGCACCCCACACCGTGACAACAACNAGACCAAAGT 707
consensus_8046#1 ---GCG-GTTCTGCGGC--AGCCGCTGCAGCC-AAAGCGGGA-AAAGACAAAGACAAAG- 761
*** * ******* ** ***** ** * * ** ** ** ** * *****
consensus_8046#0 CCCAAACACACACACAAGCACAACACACACTTCTTAACCCCTGNTTTCACCACCTACATG 767
consensus_8046#1 -CCAAACCAAAGCA-AAGCA-AAAAGAAAATTAACAATCCATGTATCGAGCAAGCTAATG 818
****** * ** ***** ** * * * ** ** ** ** * * ** ***
consensus_8046#0 TCNATGCCC-CTGCTCCCAAACACTTGCCAANTTATCACATANTAAAAANCNTTTTCCNC 826
consensus_8046#1 TCAATGCTCGTTGCTACAAATAAATT---------------------------------- 844
** **** * **** * ** * **
consensus_8046#0 ACNTGNTCCTCATATACATGACTTAAATTCCAATTCTCNCCTCACGCACCACTTTTCGNA 886
consensus_8046#1 ------------------------------------------------------------
consensus_8046#0 CCAACATATAT 897
consensus_8046#1 -----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||