These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8055#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1166 fasta sequence [GTCATACAGTAAGACAAAATTATAGCCTTTTATTATCCAAACTTTAAGCTTTGATTGCGTGGAAGAACGCGTGCAAGCATGGTATTTGTTTTTTTTTTCTAAAGAAAGAATGTTGCTCTGTTGTCCCTTTCTCAAACCAGATTAAATGTTTTATTTATTTCCTTTG-TTCAGTGTATATAATTAACTGGTATAACAAACACACACACAACAGCTGCTGTATGTAAAGAGTAAACGAAGTGCAACACTGCGTCGCGTGGCACTAACTCTAGTTGATAGGAAAGCGAAAGGAGATTTGTTGGAACTGTTCTCACACAGAGTGCAGTTACGAATAGAATCAATTGCAATGTAAAGTTGTAAAGAAGCACCAGCAGGGAAAAATGATGAACAGTGGCAACCAACAGCACACATACATACAGCGCAATGTCTCCATCCAGTTTA---TGAGTGTGCATCCTAGGCATGTATCATATTTGCAAAGAAACGTTTTCAAAGCTCAAGGCGCGACAGCAATGCATAGCAAACACACACACATAAGCAAGCAGTGAACGTAACTAGAGCGTAATCAAATAATTCAGCCTAATAGCAGGAAATCAAGCAACAAG-----AAAAAAAACGGTTAGGAAAAATAATCATTAAAACATTTCTCAACTTCGAATACAAAAATACCATTCAAAAACTTTGGTAGCAATTGATTGTTTTCTCTTATATAGCGCTGACTGATGCGTTGTTTAGGTAGTACATACACACACGTAGAGGTAATAACCTATTCCATCGTGTTTAATGTAGTTGCAGCT-AAAAAAAAAGCAAAGAGAAATGCATTTCGAACCATTGTGCTGTTTGTTTGCTGAGTGCGCGAGAGTTTTCGTTTGCTCCTCTTCGCGAGCGTGTTTTCATGGTAGTTAAAATTCTAAGCTGTGCGCAAAACAT-AAATGAACAAGACGACCAGATAGAGAGAGAACCGAAACC-ATCATGCNAAGCCTCGAGATCATCTCCGTACGCAGAGAGGTTCGCTAAACACCTGCTAATAAGATGTTAGTAAGTAAGCGGAATGGAGATGTGTGTAATTCGTACTAGGTAAACTTACACCATACGGTAATGTCAAAGGGCGCGTGGAGACATATACACGGGATGCGGATAAAGTAAAACAAAATATACACAAACCAACAAATCTG] [+] EMBL BX621951 [GTCATACAGTAAGACAAAATTATAGCCTTTTATTATCCAAACTTTAAGCTTTGATTGCGTGGAAGAACGCGTGCAAGCATGGTATTTGTTTTTTTTTTCTAAAGAAAGAATGTTGCTCTGTTGTCCCTTTCTCAAACCAGATTAAATGTTTTATTTATTTCCTTTGTTTCAGTGTATATAATTAACTGGTATAACAAACACACACACAACAGCTGCTGTATGTAAAGAGTAAACGAAGTGCAACACTGCGTCGCGTGTCACTAACTCTAGTTGATAGGAAAGCGAAAGGAGATTTGTTGGAACTGTTCTAACACAGAGTGCAGTTACGAATAGAATCAATTGCAATGTAAAGTTGTAAAGAAGCACCAGCAGGGAAACAAGATGAACAGTGGCAACCAACAGCACACATACATACAGCGTAATGTCTCCATCCAGTTTAGTGTGAGTGTGCATCCTAGGCATGTATCATATTTGCAAGTAAACATTTTCAAAGCTCAAGGCGCGACAGCAATGCATAGCAAACACACACACATAAGCAAACAGTGAACGTAACTAGAGCGTAATCAAATAATTCAGCCTAATAGCAGGAAATCAAGCAACAAGAAAGAAAAAAAAACGGTTAGGAAAAATAATCATTACAACATTTCTCAACTTCGAATACAAAAATACCATTCAAAAACTTTGGTAGCAATTGATTGGTTTCTCTTATATAGCGCTGACTGATGCGTTGTTTANGTAGTACATACACACACGTAGANGTAATAACATATTTCATCGGGGTTAATGTAGTTGCAGCT ] [+] EMBL BX621745 [ aggTGATTGCGTGGAAGAACGCGTGCAAGCATGGTATTTGTTTTTTTTTTCTAAAGAAAGAATGTTGCTCTGTTGTCCCTTTCTCAAACCANATTANATGTTTTATTTATTTCCTTTG TNCNGTGTATATAATTAACTGGTATAACAAACACACACACAACAGCTGCTGTATGTAAAGAGTAAACGAAGTGCAACACTGCGTCGCGTGTCACTAACTCTAGTTGATAGGAAAGCGAAAGGAGATTTGTTGGAACTGTTCTAACACAGAGTGCAGTTACGAATAGAATCAATTGCAATGTAAAGTTGTAAAGAAGCACCAGCAGGGAAACAAGATGAACAGTGGCAACCAACAGCACACATACATACAGCGTAATGTCTCCNTCCAGTTTAGTGTGAGTGTGCATCCTANGCATGTATCATATTTGCAAGTAAACATTTTCAAAGCTCAAGGCGCGACAGCNATGCATAGCAAACACACACACATAAGCAANCAGNGAACGTAACTAGAGCGTAATCAAATAATTCAGCCTAATAGCAGGAAATCAAGCAACAAG AAAGAAAA ] [+] EMBL BX610196 [ GAATGTTGCTCTGTTGTCCCTTTCTCAAACCAGATTAAATGTTTTATTTATTTCCTTTG TTCAGTGTATATAATTAACTGGTATAACAAACACACACACAACAGCTGCTGTATGTAAAGAGTAAACGAAGTGCAACACTGCGTCGCGTGGCACTAACTCTAGTTGATAGGAAAGCGAAAGGAGATTTGTTGGAACTGTTCTCACACAGAGTGCAGTTACGAATAGAATCAATTGCAATGTAAAGTTGTAAAGAAGCACCAGCAGGGAAAAATGATGAACAGTGGCAACCAACAGCACACATACATACAGCGCAATGTCTCCATCCAGTTTA TGAGTGTGCATCCTAGGCATGTATCATATTTGCAAAGAAACGTTTTCAAAGCTCAAGGCGCGACAGCAATGCATAGCAAACACACACACATAAGCAAGCAGTGAACGTAACTAGAGCGTAATCAAATAATTCAGCCTAATAGCAGGAAATCAAGCAACAAG AAAAAAAACGGTTAGGAAAAATAATCATTAAAACATTTCTCAACTTCGAATACAAAAATACCATTCAAAAACTTTGGTAGCAATTGATTGTTTTCTCTTATATAGCGCTGACTGATGCGTTGTTTAGGTAGTACATACACACACGTAGAGGTAATAACCTATTCCATCGTG ] [+] EMBL BX625539 [ CTGCGTCGCGTGGCACTAACTCTAGTTGATAGGAAAGCGAAAGGAGATTTGTTGGAACTGTTCTCACACAGAGTGCAGTTACGAATAGAATCAATTGCAATGTAAAGTTGTAAAGAAGCACCAGCAGGGAAAAATGATGAACAGTGGCAACCAACAGCACACATACATACAGCGCAATGTCTCCATCCAGTTTA TGAGTGTGCATCCTAGGCATGTATCATATTTGCAAAGAAACGTTTTCAAAGCTCAAGGCGCGACAGCAATGCATAGCAAACACACACACATAAGCAAGCAGTGAACGTAACTAGAGCGTAATCAAATAATTCAGCCTAATAGCAGGAAATCAAGCAACAAG AAAAAAAACGGTTAGGAAAAATAATCATTAAAACATTTCTCAACTTCGAATACAAAAATACCATTCAAAAACTTTGGTAGCAATTGATTGTTTTCTCTTATATAGCGCTGACTGATGCGTTGTTTAGGTAGTACATACACACACGTAGAGGTAATAACCTATTCCATCGTGTTTAATGTAGTTGCAGCTAAAAAAAAAAGCAAAGAGAAATGCATTTCGAACCATTGTGCTGTTTGTTTGCTGAGTGCGCGAGAGTTTTCGTTTGCTCCTCTTCGCGAGCGTGTTTTCATGGTAGTTAAAATTCTAAGCTGTGCGCAAAACAT AAATGAACAAGACGACCAGATAGAGAGAGAACCGAAACC ATCATGCNAAGCCTCGAGATCATCTCCG ] [+] EMBL BX614291 [ GGCACTAACTCTAGTTGATAGGAAAGCGAAAGGAGATTTGTTGGAACTGTTCTCACACAGAGTGCAGTTACGAATAGAATCAATTGCAATGTAAAGTTGTAAAGAAGCACCAGCAGGGAAAAATGATGAACAGTGGCAACCAACAGCACACATACATACAGCGCAATGTCTCCATCCAGTTTA TGAGTGTGCATCCTAGGCATGTATCATATTTGCAAAGAAACGTTTTCAAAGCTCAAGGCGCGACAGCAATGCATAGCAAACACACACACATAAGCAAGCAGTGAACGTAACTAGAGCGTAATCAAATAATTCAGCCTAATAGCAGGAAATCAAGCAACAAG AAAAAAAACGGTTAGGAAAAATAATCATTAAAACATTTCTCAACTTCGAATACAAAAATACCATTCAAAAACTTTGGTAGCAATTGATTGTTTTCTCTTATATAGCGCTGACTGATGCGTTGTTTAGGTAGTACATACACACACGTAGAGGTAATAACCTATTCCATCGTGTTTAATGTAGTTGCAGCT AAAAAAAAAGCAAAGAGAAATGCATTTCGAACCATTGTGCTGTTTGTTTGCTGAGTGCGCGAGAGTTT ] [+] EMBL BX618391 [ CTCCATCCAGTTTA TGAGTGTGCATCCTAGGCATGTATCATATTTGCAAAGAAACGTTTTCAAAGCTCAAGGCGCGACAGCAATGCATAGCAAACACACACACATAAGCAAGCAGTGAACGTAACTAGAGCGTAATCAAATAATTCAGCCTAATAGCAGGAAATC ] [+] EMBL BX611122 [ GCAAGCAGTGAACGTAACTAGAGCGTAATCAAATAATTCAGCCTAATAGCAGGAAATCAAGCAACAAG AAAAAAAACGGTTAGGAAAAATAATCATTAAAACATTTCTCAACTTCGAATACAAA ] [+] EMBL BM591796 [ ccgAGTTAAAATTCTAAGCTGTGCGCAAAACATAAAATGAACAAGACGACAAGATAGAGAGAGAACAGAAACCAATCATGCAAAGCCTCGAGATCATCTCCGTACGCAGAGAGGTTCGCTAAACACCTGCTAATAAGATGTTAGTAAGTAAGCGGAATGGAGATGTGTGTAATTCGTACTAGGTAAACTTACACCATACGGTAATGTCAAAGGGCGCGTGGAGACATATACACGGGATGCGGATAAAGTAAAACAAAATATACACAAACCAACAAATCTG] consensusID : consensus_8055#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 479 fasta sequence [TATATAACTTAACTGGTATAACAAACACACACACAACAGCTGCTGTATGTAAAGAGTAAACGAAGTGCAACACTGCGTCGCGTGTCACTAACTCTAGTTGATAGGAAAGCGAAAGGAGATTTGTTGGAACTGTTCTAACACAGAGTGCAGTTACGAATAGAATCAATTGCAATGTAAAGTTGTAAAGAAGCACCAGCAGGGAAACAAGATGAACAGTGGCAACCAACAGCACACATACATACAGCGTAATGTCTCCATCCAGTTTAGTGTGAGTGTGCATCCTAGGCATGTATCATATTTGCAAGTAAACATTTTCAAAGCTCAAGGCGCGACAGCAATGCATAGCAAACACACACACATAAGCAAACAGTGAACGTAACTAGAGCGTAATCAAATAATTCAGCCTAATAGCAGGAAATCAAGCAACAAGAAAGAAAAGAAAAACGGTTAGGAAAAAATNCAACAAAAAGCAGCATGTG] [-] EMBL BX466831 [TATATAACTTAACTGGTATAACAAACACACACACAACAGCTGCTGTATGTAAAGAGTAAACGAAGTGCAACACTGCGTCGCGTGTCACTAACTCTAGTTGATAGGAAAGCGAAAGGAGATTTGTTGGAACTGTTCTAACACAGAGTGCAGTTACGAATAGAATCAATTGCAATGTAAAGTTGTAAAGAAGCACCAGCAGGGAAACAAGATGAACAGTGGCAACCAACAGCACACATACATACAGCGTAATGTCTCCATCCAGTTTAGTGTGAGTGTGCATCCTAGGCATGTATCATATTTGCAAGTAAACATTTTCAAAGCTCAAGGCGCGACAGCAATGCATAGCAAACACACACACATAAGCAAACAGTGAACGTAACTAGAGCGTAATCAAATAATTCAGCCTAATAGCAGGAAATCAAGCAACAAGAAAGAAAAGAAAAACGGTTAGGAAAAAATNCAACAAAAAGCAGCATGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8055#0 GTCATACAGTAAGACAAAATTATAGCCTTTTATTATCCAAACTTTAAGCTTTGATTGCGT 60 consensus_8055#1 ------------------------------------------------------------ consensus_8055#0 GGAAGAACGCGTGCAAGCATGGTATTTGTTTTTTTTTTCTAAAGAAAGAATGTTGCTCTG 120 consensus_8055#1 ------------------------------------------------------------ consensus_8055#0 TTGTCCCTTTCTCAAACCAGATTAAATGTTTTATTTATTTCCTTTGTTCAGTGTATATAA 180 consensus_8055#1 -----------------------------------------------------TATATAA 7 ******* consensus_8055#0 -TTAACTGGTATAACAAACACACACACAACAGCTGCTGTATGTAAAGAGTAAACGAAGTG 239 consensus_8055#1 CTTAACTGGTATAACAAACACACACACAACAGCTGCTGTATGTAAAGAGTAAACGAAGTG 67 *********************************************************** consensus_8055#0 CAACACTGCGTCGCGTGGCACTAACTCTAGTTGATAGGAAAGCGAAAGGAGATTTGTTGG 299 consensus_8055#1 CAACACTGCGTCGCGTGTCACTAACTCTAGTTGATAGGAAAGCGAAAGGAGATTTGTTGG 127 ***************** ****************************************** consensus_8055#0 AACTGTTCTCACACAGAGTGCAGTTACGAATAGAATCAATTGCAATGTAAAGTTGTAAAG 359 consensus_8055#1 AACTGTTCTAACACAGAGTGCAGTTACGAATAGAATCAATTGCAATGTAAAGTTGTAAAG 187 ********* ************************************************** consensus_8055#0 AAGCACCAGCAGGGAAAAATGATGAACAGTGGCAACCAACAGCACACATACATACAGCGC 419 consensus_8055#1 AAGCACCAGCAGGGAAACAAGATGAACAGTGGCAACCAACAGCACACATACATACAGCGT 247 ***************** * *************************************** consensus_8055#0 AATGTCTCCATCCAGTTTA---TGAGTGTGCATCCTAGGCATGTATCATATTTGCAAAGA 476 consensus_8055#1 AATGTCTCCATCCAGTTTAGTGTGAGTGTGCATCCTAGGCATGTATCATATTTGCAAGTA 307 ******************* *********************************** * consensus_8055#0 AACGTTTTCAAAGCTCAAGGCGCGACAGCAATGCATAGCAAACACACACACATAAGCAAG 536 consensus_8055#1 AACATTTTCAAAGCTCAAGGCGCGACAGCAATGCATAGCAAACACACACACATAAGCAAA 367 *** ******************************************************* consensus_8055#0 CAGTGAACGTAACTAGAGCGTAATCAAATAATTCAGCCTAATAGCAGGAAATCAAGCAAC 596 consensus_8055#1 CAGTGAACGTAACTAGAGCGTAATCAAATAATTCAGCCTAATAGCAGGAAATCAAGCAAC 427 ************************************************************ consensus_8055#0 AAGAAAAAAAACGGTTAGGAAAAATAATCATTAAAACATTTCTCAACTTCGAATACAAAA 656 consensus_8055#1 AAGAAAGAAAA-------GAAAAACGGTTAGGAAAAAATNCAACAAAAAGCAGCATGTG- 479 ****** **** ****** * * **** ** *** * * consensus_8055#0 ATACCATTCAAAAACTTTGGTAGCAATTGATTGTTTTCTCTTATATAGCGCTGACTGATG 716 consensus_8055#1 ------------------------------------------------------------ consensus_8055#0 CGTTGTTTAGGTAGTACATACACACACGTAGAGGTAATAACCTATTCCATCGTGTTTAAT 776 consensus_8055#1 ------------------------------------------------------------ consensus_8055#0 GTAGTTGCAGCTAAAAAAAAAGCAAAGAGAAATGCATTTCGAACCATTGTGCTGTTTGTT 836 consensus_8055#1 ------------------------------------------------------------ consensus_8055#0 TGCTGAGTGCGCGAGAGTTTTCGTTTGCTCCTCTTCGCGAGCGTGTTTTCATGGTAGTTA 896 consensus_8055#1 ------------------------------------------------------------ consensus_8055#0 AAATTCTAAGCTGTGCGCAAAACATAAATGAACAAGACGACCAGATAGAGAGAGAACCGA 956 consensus_8055#1 ------------------------------------------------------------ consensus_8055#0 AACCATCATGCNAAGCCTCGAGATCATCTCCGTACGCAGAGAGGTTCGCTAAACACCTGC 1016 consensus_8055#1 ------------------------------------------------------------ consensus_8055#0 TAATAAGATGTTAGTAAGTAAGCGGAATGGAGATGTGTGTAATTCGTACTAGGTAAACTT 1076 consensus_8055#1 ------------------------------------------------------------ consensus_8055#0 ACACCATACGGTAATGTCAAAGGGCGCGTGGAGACATATACACGGGATGCGGATAAAGTA 1136 consensus_8055#1 ------------------------------------------------------------ consensus_8055#0 AAACAAAATATACACAAACCAACAAATCTG 1166 consensus_8055#1 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||