These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8078#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 899 fasta sequence [CAGAATCGCGCACGAGGCCAAACGATAGACAATGAAGACTTTCATGATTTTGGTACTGTGTGCGGCAATCGCTCTGGTTGCTGCCGAGGATAAGAAGGGTCCAGCCACCCATCACGATGTTAAGCAGCAGGAAAGCCACGCTCCGCAGCAGCCGAAGCAGCACGACCAGCACCAACAACACCAACAACAGCAGCACCCAGCATCTCAGCAGCACTCGCTGAAGCAAACCCAGCAGCACCAACAGCCACAGCCGGCACCCCAC-AAGTATAAGCGTGAAGCACCAAAGGACTCGGCTGCGGGACATTCGACCACCGCTGCACCGAAGGCAACCGTCGATCCGAAACAGCCGTCCGTGCTGCCGGCCATCATCGGACAGGCCCCGAAAAACAAGCGTGACACTGTAGCTGCTCAGCCAGCCGCCGCTGCCCGCCCATCCACCAATGCTCCACCAAAGGCCGCTGCTGCAGGAGCTACCACCAACGGCCAGCAGCGTAAAACCCAGTCCGCCCCGCGTCCTACTGCAAACAAGCAGCAGCAGAGCCGTGATCAGGCATCGAACAAGCCCCAAACGACTGGAAATGCAAAGGTACCGGCTACCGTTAACCAGCCCGCCTCGAACCCGACGACTGCTAACCCCGCGAAGAAGGTTTAAATCACA-CAAAAGTGGAACTGAACGAATCGAATCGATGATCGATAATTTGTGAAGAATGTGTTTAAACTCTATTTACACAATGTG-TTTTCTATTTACAACAACAATCCAAATTAAANCACCACCGTTTAATTTTGCAAATCCCAATGTTACAAAACANAACAACANAAACCGGACATTTTTTGCGGGCCACAAGCCTTATTCCCCTTTTAATGAGGNTTAATTTAAACCTTGACCATTGCCCATCGTT] [+] EMBL BX467890 [CAGAATCGCGCACGAGGTCAAACGATAGACAATGAAGACTTTCATGATTTTGGTACTGTGTGCGGCAATCGCTCTGGTTGCTGCCGAGGATAAGAAGGGTCCAGCCACCCATCACGATGTTAAGCAGCAGGAAAGCCACGCTCCGCAGCAGCCGAAGCAGCACGACCAGCACCAACAACACCAACAACAGCAGCACCCAGCATCTCAGCAGCACTCGCTGAAGCAAACCCAGCAGCACCAACAGCCACAGCCGGCACCCCACAAAGTATAAGCGTGAAGCACCAAAGGACTCGGCTGCGGGACATTCGACCACCGCTGCACCGAAGGCAACCGTCGATCCGAAACAGCCGTCCGTGCTGCCGGCCATCATCGGACAGGCCCCGAAAAACAAGCGTGACACTGTAGCTGCTCAGCCAGCCGCCGCTGCCCGCCCATCCACCAATGCTCCACCAAAGGCCGCTGCTGCAGGAGCTACCACCAACGGCCAGCAGCGTAAAACCCAGTCCGCCCCGCGTCCTACTGCAAACAAGCAGCAGCAGAGCCGTGATCAGGCATCGAACAAGCCCCAAACGACTGGAAATGCAAAGGTACCGGCTACCGTTAACCAGCCCGCCTCGAACCCGACGACTGCTAACCCCGCGAAGAAGGTTTAAATCACAGCAAAAGTGGAACTGAACGAATCGAATCGATGATCGATAATTTGTGAAGAATGTGTTTAAACTCTATTTACACAATGTG TTTTCTATTTACAACAACAATCCAAATTAAANCACCACCGTTTAATTTTGCAAATCCCAATGTTACAAAACANAACAACANAAACCGGACATTTTTTGCGGGCCACAAGCCTTATTCCCCTTTTAATGAGGNTTAATTTAAACCTTGACCATTGCCCATCGTT] [+] EMBL BM644088 [ ccgctCCAAACGATAGACAATGAAGACTTTCATGATTTTGGTACTGTGTGCGGCAATCGCTCTGGTTGCTGCCGAGGATAAGAAGGGTCCAGCCACCCATCACGATGTTAAGCAGCAGGAAAGCCACGCTCCGCAGCAGCCGAAGCAGCACGACCAGCACCAACAACACCAACAACAGCAGCACCCAGCATCTCAGCAGCACTCGCTGAAGCAAACCCAGCAGCACCAACAGCCACAGCCGGCACCCCAC AAGTATAAGCGTGAAGCACCAAAGGACTCGGCTGCGGGACATTCGACCACCGCTGCACCGAAGGCAACCGTCGATCCGAAACAGCCGTCCGTGCTGCCGGCCATCATCGGACAGGCCCCGAAAAACAAGCGTGACACTGTAGCTGCTCAGCCAGCCGCCGCTGCCCGCCCATCCACCAATGCTCCACCAAAGGCCGCTGCTGCAGGAGCTACCACCAACGGCCAGCAGCGTAAAACCCAGTCCGCCCCGCGTCCTACTGCAAACAAGCAGCAGCAGAGCCGTGATCAGGCATCGAACAAGCCCCAAACGACTGGAAATGCAAAGGTACCGGCTACCGTTAACCAGCCCGCCTCGAACCCGACGACTGCTAACCCCGCGAAGAAGGTTTAAATCACA CAAAAGTGGAACTGAACGAATCGAATCGATGATCGATAATTTGTG ] [+] EMBL BM621569 [ ccgAAACGATAGACAATGAAGACTTTCATGATTTTGGTACTGTGTGCGGCAATCGCTCTGGTTGCTGCCGAGGATAAGAAGGGTCCAGCCACCCATCACGATGTTAAGCAGCAGGAAAGCCACGCTCCGCAGCAGCCGAAGCAGCACGACCAGCACCAACAACACCAACAACAGCAGCACCCAGCATCTCAGCAGCACTCGCTGAAGCAAACCCAGCAGCACCAACAGCCACAGCCGGCACCCCAC AAGTATAAGCGTGAAGCACCAAAGGACTCGGCTGCGGGACATTCGACCACCGCTGCACCGAAGGCAACCGTCGATCCGAAACAGCCGTCCGTGCTGCCGGCCATCATCGGACAGGCCCCGAAAAACAAGCGTGACACTGTAGCTGCTCAGCCAGCCGCCGCTGCCCGCCCATCCACCAATGCTCCACCAAAGGCCGCTGCTGCAGGAGCTACCACCAACGGCCAGCAGCGTAAAACCCAGTCCGCCCCGCGTCCTACTGCAAACAAGCAGCAGCAGAGCCGTGATCAGGCATCGAACAAGCCCCAAACGACTGGAAATGCAAAGGTACCGGCTACCGTT ] [+] EMBL BM614456 [ ccgCGATAGACAATGAAGACTTTCATGATTTTGGTACTGTGTGCGGCAATCGCTCTGGTTGCTGCCGAGGATAAGAAGGGTCCAGCCACCCATCACGATGTTAAGCAGCAGGAAAGCCACGCTCCGCAGCAGCCGAAGCAGCACGACCAGCACCAACAACACCAACAACAGCAGCACCCAGCATCTCAGCAGCACTCGCTGAAGCAAACCCAGCAGCACCAACAGCCACAGCCGGCACCCCAC AAGTATAAGCGTGAAGCACCAAAGGACTCGGCTGCGGGACATTCGACCACCGCTGCACCGAAGGCAACCGTCGATCCGAAACAGCCGTCCGTGCTGCCGGCCATCATCGGACAGGGCCCGAAAAACAAGCGTGACACTGTAGCTGCTCAGCTAGCCGCCGCTGCCCGCCCATCCACCAATGCTCCACCAAAGGCCGCTGCTGCAGGAGCTACCACCAACGGCCAGCAGCGTAAAACCCAGTCCGCCCCGCGTCCTACTGCAAACAAGCAGCAGCAGAGCCGTGATCAGGGATCGAACAAGCCCCAAACGACTGGAAATGCAAAGGTACCGGCTACCGTTAACCAGCCCGCCTCGAACCCGACGA ] [+] EMBL BX613911 [ CAATGAAGACTTTCATGATTTTGGTACTGTGTGCGGCAATCGCTCTGGTTGCTGCCGAGGATAAGAAGGGTCCAGCCACCCATCACGATGTTAAGCAGCAGGAAAGCCACGCTCCGCAGCAGCCGAAGCAGCACGACCAGCACCAACAAAACCAACAACAGCAGCACCCAGCATCTCAGCAGCACTCGCTGAAGCAAACCCAGCAGCACCAACAGCCACAGCCGGCACCCCAC AAGTATAAGCGTGAAGCACCAAAGGACTCGGCTGCGGG ] [+] EMBL BX613912 [ GACTTTCATGATTTTGGTACTGTGTGCGGCAATCGCTCTGGTTGCTGCCGAGGATAAGAAGGGTCCAGCCACCCATCACGATGTTAAGCAGCAGGAAAGCCACGCTCCGCAGCAGCCGAAGCAGCACGACCAGCACCAACAAAACCAACAACAGCAGCACCCAGCATCTCAGCAGCACTCGCTGAAGCAAACCCAGCAGCACCAACAGCCACAGCCGGCACCCCAC AAGTATAAGCGTGAAGCACCAAAGGACTCGGCTGCGGGACATTCGACCACCGCTGCACCGAAGTCAACCGTCGATCCGAAACAGCCGTCCGTGCTGCCGGCCATCATCGGACAGGCCCCGAAAAACAAGCGTGACACTGTAGCTGCTCAGCCAGCCGCCGCTGCCCGCCCATCCACCAATGCTCCACCAAAGGCCGCTGCTGCAGGAGCTACCACCAACGGCCAGCAGCGTAAAACCCAGTCCGCTCCGCGTCCTACTGCAAACAAGCAG ] [+] EMBL BM644837 [ ccgGGAGCTACCACCAACGGCCAGCAGCGTAAAACCCAGTCCGCCCCGCTTCCTACTGCAAACAAGCAGCAGCAGAGCCGTGATCAGGCATCGAACAAGCCCCAAACGACTGGAAATGCAAAGGTACCGGCTACCGTTAACCAGCCCGCCTCGAACCCGACGACTGCTAACCCCGCGAAGAAGGTTTAAATCACA CAAAAGTGGAACTGAACGAATCGAATCGATGATCGATAATTTGTGAAG ATGTGTTTTTTTTTTATTTACACAATGTGTTTTTCTATT AAAAAAAAT CAAA TAAA CA CA CG TTAA TTTGC AAT CCAATGT ] consensusID : consensus_8078#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 739 fasta sequence [CCCGGTTATTCCACGATAGAAATNCAAGATTTTGATTTTTGTATGTGTGCGGCATCGCTCTGGTTGCTGGCGAGGTAAAAGGGTCCAGCCACCATCANGATGTTAGCAGAGGAAAGCCACGCTCCGCAGCAGCCGAAGCAGACGACAGCACCAACAACACAACAAAGAGCACCAGCATCTCAGCAGACTCGCTGAAGCAAAACCAGAGACCAACAGCACAGCGGACCCACAAGTATAATCGTGAAGCACCAAAGGACTCGGCTGCGGGACATTCGACAACGTGACCGAAGGCAACCGTCTGATCCGAAAAGCCGTCCGTGCTTGCGGCATCATCGGACAGGGCCCGAAAAACAAGCGTGACACTGTAGCTGCTCAGCCAGCGCTGCTGCCCGCCATCCACAATGCTCACCAAAGGCGCTGCTGCAGGAGCTACCAACAAGGGCAGCAGCGTAAAAACCAGTNCCGCCCGCGTCCTACTGAAACAAGGCAGCAGAGAGCCGTGATCAGGCTCGAACAAGCCCAAACGAATGGAAAATGCAAAGGTACCGGCTACGTTAACCAGCCGGCTCGAACCCGATGATTGTAACCCGGAAGAAGTTAAATCACACCACAGTGGATGAAGGATTCGATCGAGATCGNTATTGGGAACNGTNTTNTACACACTGGTTTTCTATAAACAAATCAATACACACGTTTTGCGTCATGTAAAAAAAAAAACAGTTTGGGNAGTTCTAAGNGG] [+] EMBL AL930944 [CCCGGTTATTCCACGATAGAAATNCAAGATTTTGATTTTTGTATGTGTGCGGCATCGCTCTGGTTGCTGGCGAGGTAAAAGGGTCCAGCCACCATCANGATGTTAGCAGAGGAAAGCCACGCTCCGCAGCAGCCGAAGCAGACGACAGCACCAACAACACAACAAAGAGCACCAGCATCTCAGCAGACTCGCTGAAGCAAAACCAGAGACCAACAGCACAGCGGACCCACAAGTATAATCGTGAAGCACCAAAGGACTCGGCTGCGGGACATTCGACAACGTGACCGAAGGCAACCGTCTGATCCGAAAAGCCGTCCGTGCTTGCGGCATCATCGGACAGGGCCCGAAAAACAAGCGTGACACTGTAGCTGCTCAGCCAGCGCTGCTGCCCGCCATCCACAATGCTCACCAAAGGCGCTGCTGCAGGAGCTACCAACAAGGGCAGCAGCGTAAAAACCAGTNCCGCCCGCGTCCTACTGAAACAAGGCAGCAGAGAGCCGTGATCAGGCTCGAACAAGCCCAAACGAATGGAAAATGCAAAGGTACCGGCTACGTTAACCAGCCGGCTCGAACCCGATGATTGTAACCCGGAAGAAGTTAAATCACACCACAGTGGATGAAGGATTCGATCGAGATCGNTATTGGGAACNGTNTTNTACACACTGGTTTTCTATAAACAAATCAATACACACGTTTTGCGTCATGTAAAAAAAAAAACAGTTTGGGNAGTTCTAAGNGG] consensusID : consensus_8078#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence [CAGAATCGGCACGAGGGTACTTTCATGATTTTGGTACTGTGTGCGGCAATCGCTCTGGTTGCTGCCGAGGATAAGAAGGGTCCAGCCACCCATCACGATGTTAAGCATGCAGGAAAGCCACGCTCCGCAGCAGCCGAAGCAGCACGACCAGCACCGAACAACACCAACAACAGCAGCACCCAGCATCTCAGCAGCACTCGCTGAAGCAAACCCAGCAGCACCAACAGCCACAGCCGGACCCCGACGAAGTATAAAGCGTGAAGGCACCAAAGGACTCGGCTGCGGGACATTCGACCACCGNCTGCACCGAAGGCAACCGTCGATCCGAAACAGACGTCCGTGCTGCCGGGCATCATCGGACAGGCCCCGAATAGAACAAGCGTGAACACTTGTAGGCTTGNCATCCAGGGCAGGCCAGCACGCGTGGCCCGGCCCCNAGTCGCAGCNCAAAGTGGCCTTCCCAACCCAAAATAGGCCCAGGACTTTAGCTTGGCCAAGGAGAAAGCCGTAACCAAGCGCAAAGCNGGGNCCAAGACAAGGCCGGTTAAAGAAAGCNCGCGANGATCACGCAGCACGCGGNCGGTCCATAACGTTGGCGTCAAAAGCCAANGG] [+] EMBL BX468689 [CAGAATCGGCACGAGGGTACTTTCATGATTTTGGTACTGTGTGCGGCAATCGCTCTGGTTGCTGCCGAGGATAAGAAGGGTCCAGCCACCCATCACGATGTTAAGCATGCAGGAAAGCCACGCTCCGCAGCAGCCGAAGCAGCACGACCAGCACCGAACAACACCAACAACAGCAGCACCCAGCATCTCAGCAGCACTCGCTGAAGCAAACCCAGCAGCACCAACAGCCACAGCCGGACCCCGACGAAGTATAAAGCGTGAAGGCACCAAAGGACTCGGCTGCGGGACATTCGACCACCGNCTGCACCGAAGGCAACCGTCGATCCGAAACAGACGTCCGTGCTGCCGGGCATCATCGGACAGGCCCCGAATAGAACAAGCGTGAACACTTGTAGGCTTGNCATCCAGGGCAGGCCAGCACGCGTGGCCCGGCCCCNAGTCGCAGCNCAAAGTGGCCTTCCCAACCCAAAATAGGCCCAGGACTTTAGCTTGGCCAAGGAGAAAGCCGTAACCAAGCGCAAAGCNGGGNCCAAGACAAGGCCGGTTAAAGAAAGCNCGCGANGATCACGCAGCACGCGGNCGGTCCATAACGTTGGCGTCAAAAGCCAANGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8078#0 CAGAATCGCGCACGAGGCCAAACGATAGACAATGAAG-ACTTTCATGATTTTGGTACTGT 59 consensus_8078#1 ---------CCCGGTTATTCCACGATAGAAATNCAAG-ATTTT---GATTTTTGTA-TGT 46 consensus_8078#2 --------------------CAGAATCGGCACGAGGGTACTTTCATGATTTTGGTACTGT 40 * ** * * * * *** ****** *** *** consensus_8078#0 GTGCGGCAATCGCTCTGGTTGCTGCCGAGGATAAGAAGGGTCCAGCCACCCATCACGATG 119 consensus_8078#1 GTGCGGCA-TCGCTCTGGTTGCTGGCGAGG--TAAAAGGGTCCAGCCACC-ATCANGATG 102 consensus_8078#2 GTGCGGCAATCGCTCTGGTTGCTGCCGAGGATAAGAAGGGTCCAGCCACCCATCACGATG 100 ******** *************** ***** * *************** **** **** consensus_8078#0 TTAAGCA-GCAGGAAAGCCACGCTCCGCAGCAGCCGAAGCAGCACGACCAGCACC-AACA 177 consensus_8078#1 TTA-GCA-G-AGGAAAGCCACGCTCCGCAGCAGCCGAAGCAG-ACGAC-AGCACC-AACA 156 consensus_8078#2 TTAAGCATGCAGGAAAGCCACGCTCCGCAGCAGCCGAAGCAGCACGACCAGCACCGAACA 160 *** *** * ******************************** ***** ****** **** consensus_8078#0 ACACCAACAACAGCAGCACCCAGCATCTCAGCAGCACTCGCTGAAGCAAACCCAGCAGCA 237 consensus_8078#1 ACACAACAAAGAGCA----CCAGCATCTCAGCAG-ACTCGCTGAAGCAAAACCAGAG--A 209 consensus_8078#2 ACACCAACAACAGCAGCACCCAGCATCTCAGCAGCACTCGCTGAAGCAAACCCAGCAGCA 220 **** * ** **** *************** *************** **** * consensus_8078#0 CCAACAGCCACAGCCGGCACCCCAC-AAGTATAA-GCGTGAAG-CACCAAAGGACTCGGC 294 consensus_8078#1 CCAACAGC-ACAGCGGAC---CCAC-AAGTATAA-TCGTGAAG-CACCAAAGGACTCGGC 262 consensus_8078#2 CCAACAGCCACAGCCGGACCCCGACGAAGTATAAAGCGTGAAGGCACCAAAGGACTCGGC 280 ******** ***** * * ** ******** ******* **************** consensus_8078#0 TGCGGGACATTCGACCACCGC-TGCACCGAAGGCAACCGTC-GATCCGAAACAGCCGTCC 352 consensus_8078#1 TGCGGGACATTCGACAACG---TG-ACCGAAGGCAACCGTCTGATCCGAAA-AGCCGTCC 317 consensus_8078#2 TGCGGGACATTCGACCACCGNCTGCACCGAAGGCAACCGTC-GATCCGAAACAGACGTCC 339 *************** ** ** **************** ********* ** ***** consensus_8078#0 GTGCTGCCGGCCATCATCGGACAGGCCCCGAA--AAACAAGCGTGACACTGTAGCTGCTC 410 consensus_8078#1 GTGCTTGCGGC-ATCATCGGACAGGGCCCGAA--AAACAAGCGTGACACTGTAGCTGCTC 374 consensus_8078#2 GTGCTGCCGGGCATCATCGGACAGGCCCCGAATAGAACAAGCGTGA-ACACTTGTAGGCT 398 ***** *** ************* ****** *********** ** * * * consensus_8078#0 AGCCAGCCGCCGCTGCCCGCCCATCCACCAATGCTCCACCAAAGGCCGCTGCTGCAGGAG 470 consensus_8078#1 AGCCAGC-GCTGCTGCCCGCC-ATCCAC-AATGCTC-ACCAAAGGC-GCTGCTGCAGGAG 429 consensus_8078#2 TGNCATCCAGGGCAGGCCAGC-ACGCGT---GGCCCGGCCCCNAGTCGCAGCNCAAAGTG 454 * ** * ** * ** * * * ** * ** * ** ** * * * consensus_8078#0 CTACCACCAACGGCCAGCAGCGTAAAACCCAGTCCGCCCCGCGTCCTACTGCAAACAAGC 530 consensus_8078#1 CTACCAACAAGGGC-AGCAGCGTAAAAACCAGTNCCGCCCGCGTCCTACTGAAACAAGGC 488 consensus_8078#2 GCCTTCCCAA----------CCCAAAA-----TAGGCCCAGGACTTTAGCTTGGCCAAGG 499 *** * **** * ** * ** * * consensus_8078#0 AGCAGCAGAGCCGTGATCAGGCATCGAACAAGCCCCAAACGACTGGAAATGCAAAGGTAC 590 consensus_8078#1 AGCAG-AGAGCCGTGATCAGGC-TCGAACAAGCCCAAACGAATGGAAAATGCAAAGGTAC 546 consensus_8078#2 AG----AAAGCCGTAACCAAGCGCAAAGCNGGGNCCAAGACAAGGCCGGTTAAAGAAAGC 555 ** * ****** * ** ** * * * * ** * * * ** * consensus_8078#0 CGGCTACCGTTAACCAGCCCG-CCTCGAACCCGACGACTGCTAACCCCGCGAAGAAGGTT 649 consensus_8078#1 CGGCTAC-GTTAACCAGCC-G-GCTCGAACCCGATGATTG-TAACCCGG--AAGAAG--T 598 consensus_8078#2 NCGCGANGATCACGCAGCACGCGGNCGGTCCATAACGTTGGCGTCAAAAGCCAANGG--- 612 ** * * * **** * ** ** * ** * * * consensus_8078#0 TAAATCACACAAAAGTGGAACTGAACGAATCGAATCGATGATCGATAATTTGTGAAGAAT 709 consensus_8078#1 TAAATCACACCACAGTGGA--TGAAGGATTCGA-TCGA-GATCGNTA--TTGGGAACNGT 652 consensus_8078#2 ------------------------------------------------------------ consensus_8078#0 GTGTTTAAACTCTATTTACACAATGTGTTTTCTATTTACAACAACAATCCAAATTAAANC 769 consensus_8078#1 NT------------TNTACACACTG-GTTTTCTATAAA-----------CAAATCAATAC 688 consensus_8078#2 ------------------------------------------------------------ consensus_8078#0 ACCACCGTTTAATTTTGCAAATCCCAATGTTACAAAACANAACAACANAAACCGGACATT 829 consensus_8078#1 AC-AC------GTTTTGC----------GTCATGTAAAAAAAAAA-ACAGTTTGGGNAGT 730 consensus_8078#2 ------------------------------------------------------------ consensus_8078#0 TTTTGCGGGCCACAAGCCTTATTCCCCTTTTAATGAGGNTTAATTTAAACCTTGACCATT 889 consensus_8078#1 TCTAAGNGG--------------------------------------------------- 739 consensus_8078#2 ------------------------------------------------------------ consensus_8078#0 GCCCATCGTT 899 consensus_8078#1 ---------- consensus_8078#2 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||