Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 8092 cluster # 8092       Sequences # 9       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8092#0 length = 820 sequences # 2  
consensus_8092#1 length = 782 sequences # 7  

consensusID : consensus_8092#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 820
fasta sequence
                              [GCCCCGAGGTNNAAAAAAAAAAAAACGAGCCAAAACAGAACGAAATGCGCTGAGTACGCGAATGGTAACAGGTATTTTACCATCATACATTCAAATTTTTGCTGGATGAAAACACAAGACAAACAATTAACACACGTGTACTCTACCCTACACATAAGAAGCGCCATCACACAAAACTCATTCCACTAGAGAGAACAATCCAAAATCAGTCACACTAGCCACACCGTCAAGATAGTGCAAAACATGTCACATGCAAATGCGGTTGTAATGCGATACAAGCGGATAAGGAGCGGAAATAGTAGCAACCCGATAGAGAGAATGAGAGGGTGCAAGAGAGAGAGAGAGACGAGATAAATAGAAAGAGACAGAAAGAGGGATAAGAAACAGGATAATACAATATACAAATGTATTGTTAAACTGCATTATACTTACAGTGTCAACCGTTTACAGTAACATGCACACTATCAACGCGTATACATTGAACTCGTACACACAGAAGCATTGAACCCAAAATGATGAACATGGAAAACAAAACATACGCTGAAAGTATGAACACATAAAAAGATAACAACACATGGTGAACGGACGACGAAGAGACTAGACGCTGCTCTTGTGTGTTAGGAGCGTGGCGTACGCGATTAAACGAGGAAGAGAGCGAGAGAGATAGAGAGGGATAGAGAGAGAGAGAGAGGAAGGGATAAAGAGCGAGAGAGAGAGAGAGAGACAAAAAGAATGTGGAAAATGTAATTCTGATAAACAAGCAATTGGAGTGCCCATCTGGAATGGTGCACGGAAATAGGGATGAATAAAGAAATATATT]

[+] EMBL AL930159             [GCCCCGAGGTNNAAAAAAAAAAAAACGAGCCAAAACAGAACGAAATGCGCTGAGTACGCGAATGGTAACAGGTATTTTACCATCATACATTCAAATTTTTGCTGGATGAAAACACAAGACAAACAATTAACACACGTGTACTCTACCCTACACATAAGAAGCGCCATCACACAAAACTCATTCCACTAGAGAGAACAATCCAAAATCAGTCACACTAGCCACACCGTCAAGATAGTGCAAAACATGTCACATGCAAATGCGGTTGTAATGCGATACAAGCGGATAAGGAGCGGAAATAGTAGCAACCCGATAGAGAGAATGAGAGGGTGCAAGAGAGAGAGAGAGACGAGATAAATAGAAAGAGACAGAAAGAGGGATAAGAAACAGGATAATACAATATACAAATGTATTGTTAAACTGCATTATACTTACAGTGTCAACCGTTTACAGTAACATGCACACTATCAACGCGTATACATTGAACTCGTACACACAGAAGCATTGAACCCAAAATGATGAAC                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BX616124             [                                                             ATGGTAACAGGTATTTTACCATCATACATTCAAA TTTTGCTGGATGAAAACACAAGACAAACAATTAACACACGTGTACTCTACCCTACACATAAGAAGCGCCATCACACAAAACTCATTCCACTAGAGAGAACAATCCAAAATCAGTCACACTAGCCACACCGTCAAGATAGTGCAAAACATGTCACATGCAAATGCGGTTGTAATGCGATACAAGCGGATAAGGAGCGGAAATAGTAGCAACCCGATAGAGAGAATGAGAGGGTGCAAGAGAGAGAGAGAGA GAGATAAATAGAAAGAGACAGAAAGAGGGATAAGAAACAGGATAATACAATATACAAATGTATTGTTAAACTGCATTATACTTACAGTGTCAACCGTTTACAGTAACATGCACACTATCAACGCGTATACATTGAACTCGTACACACAGAAGCA TGAACACAAAATGATGAAGATGGAAAACAAAACATACGCTGAAAGTATGAACACATAAAAAGATAACAACACATGGTGAACGGACGACGAAGAGACTAGACGCTGCTCTTGTGTGTTAGGAGCGTGGCGTACGCGATTAAACGAGGAAGAGAGCGAGAGAGATAGAGAGGGATAGAGAGAGAGAGAGAGGAAGGGATAAAGAGCGAGAGAGAGAGAGAGAGACAAAAAGAATGTGGAAAATGTAATTCTGATAAACAAGCAATTGGAGTGCCCATCTGGAATGGTGCACGGAAATAGGGATGAATAAAGAAATATATT]


>consensus_8092#0 GCCCCGAGGTNNAAAAAAAAAAAAACGAGCCAAAACAGAACGAAATGCGCTGAGTACGCG AATGGTAACAGGTATTTTACCATCATACATTCAAATTTTTGCTGGATGAAAACACAAGAC AAACAATTAACACACGTGTACTCTACCCTACACATAAGAAGCGCCATCACACAAAACTCA TTCCACTAGAGAGAACAATCCAAAATCAGTCACACTAGCCACACCGTCAAGATAGTGCAA AACATGTCACATGCAAATGCGGTTGTAATGCGATACAAGCGGATAAGGAGCGGAAATAGT AGCAACCCGATAGAGAGAATGAGAGGGTGCAAGAGAGAGAGAGAGACGAGATAAATAGAA AGAGACAGAAAGAGGGATAAGAAACAGGATAATACAATATACAAATGTATTGTTAAACTG CATTATACTTACAGTGTCAACCGTTTACAGTAACATGCACACTATCAACGCGTATACATT GAACTCGTACACACAGAAGCATTGAACCCAAAATGATGAACATGGAAAACAAAACATACG CTGAAAGTATGAACACATAAAAAGATAACAACACATGGTGAACGGACGACGAAGAGACTA GACGCTGCTCTTGTGTGTTAGGAGCGTGGCGTACGCGATTAAACGAGGAAGAGAGCGAGA GAGATAGAGAGGGATAGAGAGAGAGAGAGAGGAAGGGATAAAGAGCGAGAGAGAGAGAGA GAGACAAAAAGAATGTGGAAAATGTAATTCTGATAAACAAGCAATTGGAGTGCCCATCTG GAATGGTGCACGGAAATAGGGATGAATAAAGAAATATATT



consensusID : consensus_8092#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 782
fasta sequence
                              [AATGGTAACAGGTATTTTACCATCATACATTCAAATTTTGCTGGATGAAAACACAAGACAAACAATTAACACACGTGTACTCTACCCTACACATAAGAAGCGCCATCACACAAAACTCATTCCACTAGAGAGAACAATCCAAAATCAGTCACACTAGCCACACCGTCAAGATAGTGCAAAACATGTCACATGCAAATGCGGTTGTAATGCGATACAAGCGGATAAGGAGCGGAAATAGTAGCAACCCGATAGAGAGAATGAGAGGGTGCAAGAGAGAGAGAGAGAGAGATAAATAGAAAGAGACAGAAAGAGGGATAAGAAACAGGATAATACAATATACAAATGTATTGTTAAACTGCATTATACTTACAGTGTCAACCGTTTACAGTAACATGCACACTATCAACGCGTATACATTGAACTCGTACACACAGAAGCATGAACACAAAATGATGAAGATGGAAAACAAAACATACGCTGAAAGTATGAACACATAAAAAGATAACAACACATGGTGAACGGACGACGAAGAGACTAGACGCTGCTCTTGTGTGGTAGGAGCGTGGCGTACGCGATTAAACGAGCGAAGGGTACGATCGCAAACATGAACATAATTCAAGAGAATATTGTAAAATACAAAAATTTCTATTATTATTAAAACCATATATAAATATACCGCAACAAAAAAGTATATATATATATATATATATATTAAAGACAAGGAAAAACTGTATCCCCTCTCGGCTAAG-AAAATGTCGAGAAACGACAATAAAACTGTGAGA]

[+] EMBL BX616693             [AATGGTAACAGGTATTTTACCATCATACATTCAAATTTTGCTGGATGAAAACACAAGACAAACAATTAACACACGTGTACTCTACCCTACACATAAGAAGCGCCATCACACAAAACTCATTCCACTAGAGAGAACAATCCAAAATCAGTCACACTAGCCACACCGTCAAGATAGTGCAAAACATGTCACATGCAAATGCGGTTGTAATGCGATACAAGCGGATAAGGAGCGGAAATAGTAGCAACCCGATAGAGAGAATGAGAGTGTGCAAGAGAGAGAGAGAGAGAGATAAATAGAAAGAGACAGAAAGAGGGATAAGAAACAGGATAATACAATATACAAATGTATTGTTAAACTGCATTATACTTACAGTGTCAACCGTTTACAGTAACATGCACACTATCAACGCGTATACATTGAACTCGTACACACAGAAGCATGAACACAAAATGATGAAGATGGAAAACAAAACATACGCTGAAAGTATGAACACATAAAAAGATAACAACACATGGTGAACGGACGACGAAGAGACTAGACGCTGCTCTTGTGTGGTAGGAGCGTGGCGTACGCGATTAAACGAGCGAAGGGTACGATCGCAAACATGAACATAATTCAAGAGAATATTGTAAAATACAAAAATTTCTATTATTATTAAAACCATATATAAATATACCGCAACAAAAAAGTATATATATATATATATATATATT                                                                      ]
[+] EMBL BX618121             [                                                     CAAGACAAACAAGTAACACACGTGTACTCTACCCTACACATAAGAAGCGCCATCACACAAAACTCAGGCCACGAGAGAGAACAACCCAAAATCAGTCACACTAGCCACACCGCCAAGAAAGCGCAAAACATGCCACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BX612762             [                                                           AAACAATTAACACACGTGTACTCTACCCTACACATAAGAAGCGCCATCACACAAAACTCATTCCACTAGAGAGAACAATCCAAAATCAGTCACACTAGCCACACCGTCAAGATAGTGCAAAACATGTCACATGCAAATGCGGTTGTAATGCGATACAAGCGGATAAGGAGCGGAAATAGTAGCAACCCGATAGAGAGAATGAGAGGGTGCAAGAGAGAGAGAGAGAGAGATAAATAGAAAGAGACAGAAAGAGGGATAAGAAACAGGATAATACAATATACAAATGTATTGTTAAACTGCATTATACTTACAGTGTCAACCGTTTACAGTAACATGCACACTATCAACGCGTATACATTGAACTCGTACACACAGAAGCATGAACACAAAATGATGAAGATGGAAAACAAAACATACGCTGAAAGTATGAACACATAAAAAGATAACAACACATGGTGAACGGACGACGAAGAGACTAGACGCTGCTCTTGTGTGGTAGGAGCGTGGCGTACGCGATTAAACGAGCGAAGGGTACGATCGCAAACATGAACATAATTCAAGAGAATATTGTAAAATACAAAAATTTCTATTATTATTAAAACCATATATAAATATACCGCAACAAAAAAGTATATATATATATATATATATATTAAAGACAAGGAAAAACTGTATCCCCTCTCGGCTAAGAAAAATGTCGAGAAACGACAATAAAACTGTGAGA]
[+] EMBL BX617170             [                                                                                                                                                          TAGCCACACCGTCAAGATAGTGCAAAACATGTCACATGCAAATGCGGTTGTAATGCGATACAAGCGGATAAGGAGCGGAAATAGTAGCAACCCGATAGAGAGAATGAGAGGGTGCAAGAGAGAGAGAGAGAGAGATAAATAGAAAGAGACAGAAAGAGGGATAAGAAACAGGATAATACAATATACAAATGTATTGTTAAACTGCATTATACTTACAGTGTCAACCGTTTACAGTAACATGCACACTATCAACGCGTATACATTGAACTCGTAAACACAGAAGCATGAACACAAAATGATGAAGATGGAAAACAAAACATACGCTGAAAGTATGAACACATAAAAAGATAACAACACATGGTGAACGGACGACGAAGAGACTAGACGCTGCTCTTGTGTGGTAGGAGCGTGGCGTACGCGATTAAACGAGCGAAGGGTACGATCGCAAACATGAACATAATTCAAGAGAATATTGTAAAATACAAAAATTTCTATTATTATTAAAACCATATATAAAT                                                                                                               ]
[+] EMBL BX618611             [                                                                                                                                                                                   AACATGTCACATGCAAATGCGGTTGTAATGCGATACAAGCTGATAAGGAGCGGAAATAGTAGCAACCCGATAGAGAGAATGAGAGGGTGCAAGAGAGAGAGAGAGAGAGATAAATAGAAAGAGACAGAAAGAGGGATAAGAAACAGGATAATACAATATACAAATGTATTGTTAAACTGCATTATACTTACAGTGTCAACCGTTTACAGTAACATGCACACTATCAACGCGTATACATTGAACTCGTACACACAGAAGCATGAACACAAAATGATGAAGATGGAAAACAAAACATACGCTGAAAGTATGAACACATAAAAAGATAACAACACATGGTGAACGGACGACGAAGAGACTAGACGCTGCTCTTGTGTGGTAGGAGCGTGGCGTACGCGATTAAACGAGCGAAGGGTACGATCGCAAACATGAACATAATTCAAGAGAATATTGTAAAATACAAAAATTTCTATTATTATTAAAACCATATATAAATATA                                                                                                            ]
[+] EMBL BX617096             [                                                                                                                                                                                                                  GATACAAGCGGATAAGGAGCGGAAATAGTAGCAACCCGATAGAGAGAATGAGAGGGTGCAAGAGAGAGAGAGAGAGAGATAAATAGAAAGAGACAGAAAGAGGGATAAGAAACAGGATAATACAATATACAAATGTATTGTTAAACTGCATTATACTTACAGTGTCAACCGTTTACAGTAACATGCACACTATCAACGCGTATACATTGAACTCGTACACACAGAAGCATGAACACAAAATGATGAAGATGGAAAACAAAACATACGCTGAAAGTATGAACACATAAAAAGATAATAACACATGGTGAACGGACGACGAAGAGACTAGACGCTGCTCTTGTGTGGTAGGAGCGTGGCGTACGCGATTAAACGAGCGAAGGGTACGATCGCAAACATGAACATAATTCAAGAGAATATTGTAAAATACAAAAATTTCTATTATTATTAAAACCATATATAAATATACCGCAACAAAAAAGTATATATATATATATATATATATTAAAGACAAGGAAAAACTGTATCCCCTCTCGGCTAAG AAAATGTCGAGAAACGACAATAAAACTGTGAG ]
[+] EMBL BX615236             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CGTGGCGTACGCGATTAAACGAGCGAAGGGTACGATCGCAAACATGAACATAATTCAAGAGAATATTGTAAAATACAAAAATCTCTATTATTATTAAAACCACATATAAATATACCGCAACAAAAAAGTATATATATATATATATATATATCAAAGACAAGGAAAAACGGTATCCCCTCTCGGCTAAG AAAAGGTCGAGAAA                   ]


>consensus_8092#1 AATGGTAACAGGTATTTTACCATCATACATTCAAATTTTGCTGGATGAAAACACAAGACA AACAATTAACACACGTGTACTCTACCCTACACATAAGAAGCGCCATCACACAAAACTCAT TCCACTAGAGAGAACAATCCAAAATCAGTCACACTAGCCACACCGTCAAGATAGTGCAAA ACATGTCACATGCAAATGCGGTTGTAATGCGATACAAGCGGATAAGGAGCGGAAATAGTA GCAACCCGATAGAGAGAATGAGAGGGTGCAAGAGAGAGAGAGAGAGAGATAAATAGAAAG AGACAGAAAGAGGGATAAGAAACAGGATAATACAATATACAAATGTATTGTTAAACTGCA TTATACTTACAGTGTCAACCGTTTACAGTAACATGCACACTATCAACGCGTATACATTGA ACTCGTACACACAGAAGCATGAACACAAAATGATGAAGATGGAAAACAAAACATACGCTG AAAGTATGAACACATAAAAAGATAACAACACATGGTGAACGGACGACGAAGAGACTAGAC GCTGCTCTTGTGTGGTAGGAGCGTGGCGTACGCGATTAAACGAGCGAAGGGTACGATCGC AAACATGAACATAATTCAAGAGAATATTGTAAAATACAAAAATTTCTATTATTATTAAAA CCATATATAAATATACCGCAACAAAAAAGTATATATATATATATATATATATTAAAGACA AGGAAAAACTGTATCCCCTCTCGGCTAAGAAAATGTCGAGAAACGACAATAAAACTGTGA GA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8092#0      GCCCCGAGGTNNAAAAAAAAAAAAACGAGCCAAAACAGAACGAAATGCGCTGAGTACGCG 60
consensus_8092#1      ------------------------------------------------------------
                                                                                  

consensus_8092#0      AATGGTAACAGGTATTTTACCATCATACATTCAAATTTTTGCTGGATGAAAACACAAGAC 120
consensus_8092#1      AATGGTAACAGGTATTTTACCATCATACATTCAAATTTT-GCTGGATGAAAACACAAGAC 59
                      *************************************** ********************

consensus_8092#0      AAACAATTAACACACGTGTACTCTACCCTACACATAAGAAGCGCCATCACACAAAACTCA 180
consensus_8092#1      AAACAATTAACACACGTGTACTCTACCCTACACATAAGAAGCGCCATCACACAAAACTCA 119
                      ************************************************************

consensus_8092#0      TTCCACTAGAGAGAACAATCCAAAATCAGTCACACTAGCCACACCGTCAAGATAGTGCAA 240
consensus_8092#1      TTCCACTAGAGAGAACAATCCAAAATCAGTCACACTAGCCACACCGTCAAGATAGTGCAA 179
                      ************************************************************

consensus_8092#0      AACATGTCACATGCAAATGCGGTTGTAATGCGATACAAGCGGATAAGGAGCGGAAATAGT 300
consensus_8092#1      AACATGTCACATGCAAATGCGGTTGTAATGCGATACAAGCGGATAAGGAGCGGAAATAGT 239
                      ************************************************************

consensus_8092#0      AGCAACCCGATAGAGAGAATGAGAGGGTGCAAGAGAGAGAGAGAGACGAGATAAATAGAA 360
consensus_8092#1      AGCAACCCGATAGAGAGAATGAGAGGGTGCAAGAGAGAGAGAGAGA-GAGATAAATAGAA 298
                      ********************************************** *************

consensus_8092#0      AGAGACAGAAAGAGGGATAAGAAACAGGATAATACAATATACAAATGTATTGTTAAACTG 420
consensus_8092#1      AGAGACAGAAAGAGGGATAAGAAACAGGATAATACAATATACAAATGTATTGTTAAACTG 358
                      ************************************************************

consensus_8092#0      CATTATACTTACAGTGTCAACCGTTTACAGTAACATGCACACTATCAACGCGTATACATT 480
consensus_8092#1      CATTATACTTACAGTGTCAACCGTTTACAGTAACATGCACACTATCAACGCGTATACATT 418
                      ************************************************************

consensus_8092#0      GAACTCGTACACACAGAAGCATTGAACCCAAAATGATGAACATGGAAAACAAAACATACG 540
consensus_8092#1      GAACTCGTACACACAGAAGCAT-GAACACAAAATGATGAAGATGGAAAACAAAACATACG 477
                      ********************** **** ************ *******************

consensus_8092#0      CTGAAAGTATGAACACATAAAAAGATAACAACACATGGTGAACGGACGACGAAGAGACTA 600
consensus_8092#1      CTGAAAGTATGAACACATAAAAAGATAACAACACATGGTGAACGGACGACGAAGAGACTA 537
                      ************************************************************

consensus_8092#0      GACGCTGCTCTTGTGTGTTAGGAGCGTGGCGTACGCGATTAAACGAG-GAAGAGAGCGAG 659
consensus_8092#1      GACGCTGCTCTTGTGTGGTAGGAGCGTGGCGTACGCGATTAAACGAGCGAAGGGTACGAT 597
                      ***************** ***************************** **** *  *** 

consensus_8092#0      ---AGAGATAGAGAGGGATAGAGAGA-----GAGAGAGAGGAAGGG----------ATAA 701
consensus_8092#1      CGCAAACATGAACATAATTCAAGAGAATATTGTAAAATACAAAAATTTCTATTATTATTA 657
                         * * **  * *    *  *****     *  * * *  **             ** *

consensus_8092#0      AGAGCG-AGAGAGAGAGAGAGAGACAAAAAGA-ATGTGGAAA---ATGTAATTCTGATAA 756
consensus_8092#1      AAACCATATATAAATATACCGCAACAAAAAAGTATATATATATATATATATATATTAAAG 717
                      * * *  * * * * * *  *  *******   ** *  * *   ** **  * * * * 

consensus_8092#0      ACAAGCAATTGGAGTGCCCATCTGGAATGGTGCACGGAAATAGGGATGAATAAAGAAATA 816
consensus_8092#1      ACAAGGAAAAACTGTATCCCCTCTCGGCTAAGAAAATGTCGAGAAACGACAATAAAACTG 777
                      ***** **     **  **            * *       **  * **  * * ** * 

consensus_8092#0      TATT- 820
consensus_8092#1      TGAGA 782
                      *    




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)