These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8092#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 820 fasta sequence [GCCCCGAGGTNNAAAAAAAAAAAAACGAGCCAAAACAGAACGAAATGCGCTGAGTACGCGAATGGTAACAGGTATTTTACCATCATACATTCAAATTTTTGCTGGATGAAAACACAAGACAAACAATTAACACACGTGTACTCTACCCTACACATAAGAAGCGCCATCACACAAAACTCATTCCACTAGAGAGAACAATCCAAAATCAGTCACACTAGCCACACCGTCAAGATAGTGCAAAACATGTCACATGCAAATGCGGTTGTAATGCGATACAAGCGGATAAGGAGCGGAAATAGTAGCAACCCGATAGAGAGAATGAGAGGGTGCAAGAGAGAGAGAGAGACGAGATAAATAGAAAGAGACAGAAAGAGGGATAAGAAACAGGATAATACAATATACAAATGTATTGTTAAACTGCATTATACTTACAGTGTCAACCGTTTACAGTAACATGCACACTATCAACGCGTATACATTGAACTCGTACACACAGAAGCATTGAACCCAAAATGATGAACATGGAAAACAAAACATACGCTGAAAGTATGAACACATAAAAAGATAACAACACATGGTGAACGGACGACGAAGAGACTAGACGCTGCTCTTGTGTGTTAGGAGCGTGGCGTACGCGATTAAACGAGGAAGAGAGCGAGAGAGATAGAGAGGGATAGAGAGAGAGAGAGAGGAAGGGATAAAGAGCGAGAGAGAGAGAGAGAGACAAAAAGAATGTGGAAAATGTAATTCTGATAAACAAGCAATTGGAGTGCCCATCTGGAATGGTGCACGGAAATAGGGATGAATAAAGAAATATATT] [+] EMBL AL930159 [GCCCCGAGGTNNAAAAAAAAAAAAACGAGCCAAAACAGAACGAAATGCGCTGAGTACGCGAATGGTAACAGGTATTTTACCATCATACATTCAAATTTTTGCTGGATGAAAACACAAGACAAACAATTAACACACGTGTACTCTACCCTACACATAAGAAGCGCCATCACACAAAACTCATTCCACTAGAGAGAACAATCCAAAATCAGTCACACTAGCCACACCGTCAAGATAGTGCAAAACATGTCACATGCAAATGCGGTTGTAATGCGATACAAGCGGATAAGGAGCGGAAATAGTAGCAACCCGATAGAGAGAATGAGAGGGTGCAAGAGAGAGAGAGAGACGAGATAAATAGAAAGAGACAGAAAGAGGGATAAGAAACAGGATAATACAATATACAAATGTATTGTTAAACTGCATTATACTTACAGTGTCAACCGTTTACAGTAACATGCACACTATCAACGCGTATACATTGAACTCGTACACACAGAAGCATTGAACCCAAAATGATGAAC ] [+] EMBL BX616124 [ ATGGTAACAGGTATTTTACCATCATACATTCAAA TTTTGCTGGATGAAAACACAAGACAAACAATTAACACACGTGTACTCTACCCTACACATAAGAAGCGCCATCACACAAAACTCATTCCACTAGAGAGAACAATCCAAAATCAGTCACACTAGCCACACCGTCAAGATAGTGCAAAACATGTCACATGCAAATGCGGTTGTAATGCGATACAAGCGGATAAGGAGCGGAAATAGTAGCAACCCGATAGAGAGAATGAGAGGGTGCAAGAGAGAGAGAGAGA GAGATAAATAGAAAGAGACAGAAAGAGGGATAAGAAACAGGATAATACAATATACAAATGTATTGTTAAACTGCATTATACTTACAGTGTCAACCGTTTACAGTAACATGCACACTATCAACGCGTATACATTGAACTCGTACACACAGAAGCA TGAACACAAAATGATGAAGATGGAAAACAAAACATACGCTGAAAGTATGAACACATAAAAAGATAACAACACATGGTGAACGGACGACGAAGAGACTAGACGCTGCTCTTGTGTGTTAGGAGCGTGGCGTACGCGATTAAACGAGGAAGAGAGCGAGAGAGATAGAGAGGGATAGAGAGAGAGAGAGAGGAAGGGATAAAGAGCGAGAGAGAGAGAGAGAGACAAAAAGAATGTGGAAAATGTAATTCTGATAAACAAGCAATTGGAGTGCCCATCTGGAATGGTGCACGGAAATAGGGATGAATAAAGAAATATATT] consensusID : consensus_8092#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 782 fasta sequence [AATGGTAACAGGTATTTTACCATCATACATTCAAATTTTGCTGGATGAAAACACAAGACAAACAATTAACACACGTGTACTCTACCCTACACATAAGAAGCGCCATCACACAAAACTCATTCCACTAGAGAGAACAATCCAAAATCAGTCACACTAGCCACACCGTCAAGATAGTGCAAAACATGTCACATGCAAATGCGGTTGTAATGCGATACAAGCGGATAAGGAGCGGAAATAGTAGCAACCCGATAGAGAGAATGAGAGGGTGCAAGAGAGAGAGAGAGAGAGATAAATAGAAAGAGACAGAAAGAGGGATAAGAAACAGGATAATACAATATACAAATGTATTGTTAAACTGCATTATACTTACAGTGTCAACCGTTTACAGTAACATGCACACTATCAACGCGTATACATTGAACTCGTACACACAGAAGCATGAACACAAAATGATGAAGATGGAAAACAAAACATACGCTGAAAGTATGAACACATAAAAAGATAACAACACATGGTGAACGGACGACGAAGAGACTAGACGCTGCTCTTGTGTGGTAGGAGCGTGGCGTACGCGATTAAACGAGCGAAGGGTACGATCGCAAACATGAACATAATTCAAGAGAATATTGTAAAATACAAAAATTTCTATTATTATTAAAACCATATATAAATATACCGCAACAAAAAAGTATATATATATATATATATATATTAAAGACAAGGAAAAACTGTATCCCCTCTCGGCTAAG-AAAATGTCGAGAAACGACAATAAAACTGTGAGA] [+] EMBL BX616693 [AATGGTAACAGGTATTTTACCATCATACATTCAAATTTTGCTGGATGAAAACACAAGACAAACAATTAACACACGTGTACTCTACCCTACACATAAGAAGCGCCATCACACAAAACTCATTCCACTAGAGAGAACAATCCAAAATCAGTCACACTAGCCACACCGTCAAGATAGTGCAAAACATGTCACATGCAAATGCGGTTGTAATGCGATACAAGCGGATAAGGAGCGGAAATAGTAGCAACCCGATAGAGAGAATGAGAGTGTGCAAGAGAGAGAGAGAGAGAGATAAATAGAAAGAGACAGAAAGAGGGATAAGAAACAGGATAATACAATATACAAATGTATTGTTAAACTGCATTATACTTACAGTGTCAACCGTTTACAGTAACATGCACACTATCAACGCGTATACATTGAACTCGTACACACAGAAGCATGAACACAAAATGATGAAGATGGAAAACAAAACATACGCTGAAAGTATGAACACATAAAAAGATAACAACACATGGTGAACGGACGACGAAGAGACTAGACGCTGCTCTTGTGTGGTAGGAGCGTGGCGTACGCGATTAAACGAGCGAAGGGTACGATCGCAAACATGAACATAATTCAAGAGAATATTGTAAAATACAAAAATTTCTATTATTATTAAAACCATATATAAATATACCGCAACAAAAAAGTATATATATATATATATATATATT ] [+] EMBL BX618121 [ CAAGACAAACAAGTAACACACGTGTACTCTACCCTACACATAAGAAGCGCCATCACACAAAACTCAGGCCACGAGAGAGAACAACCCAAAATCAGTCACACTAGCCACACCGCCAAGAAAGCGCAAAACATGCCACA ] [+] EMBL BX612762 [ AAACAATTAACACACGTGTACTCTACCCTACACATAAGAAGCGCCATCACACAAAACTCATTCCACTAGAGAGAACAATCCAAAATCAGTCACACTAGCCACACCGTCAAGATAGTGCAAAACATGTCACATGCAAATGCGGTTGTAATGCGATACAAGCGGATAAGGAGCGGAAATAGTAGCAACCCGATAGAGAGAATGAGAGGGTGCAAGAGAGAGAGAGAGAGAGATAAATAGAAAGAGACAGAAAGAGGGATAAGAAACAGGATAATACAATATACAAATGTATTGTTAAACTGCATTATACTTACAGTGTCAACCGTTTACAGTAACATGCACACTATCAACGCGTATACATTGAACTCGTACACACAGAAGCATGAACACAAAATGATGAAGATGGAAAACAAAACATACGCTGAAAGTATGAACACATAAAAAGATAACAACACATGGTGAACGGACGACGAAGAGACTAGACGCTGCTCTTGTGTGGTAGGAGCGTGGCGTACGCGATTAAACGAGCGAAGGGTACGATCGCAAACATGAACATAATTCAAGAGAATATTGTAAAATACAAAAATTTCTATTATTATTAAAACCATATATAAATATACCGCAACAAAAAAGTATATATATATATATATATATATTAAAGACAAGGAAAAACTGTATCCCCTCTCGGCTAAGAAAAATGTCGAGAAACGACAATAAAACTGTGAGA] [+] EMBL BX617170 [ TAGCCACACCGTCAAGATAGTGCAAAACATGTCACATGCAAATGCGGTTGTAATGCGATACAAGCGGATAAGGAGCGGAAATAGTAGCAACCCGATAGAGAGAATGAGAGGGTGCAAGAGAGAGAGAGAGAGAGATAAATAGAAAGAGACAGAAAGAGGGATAAGAAACAGGATAATACAATATACAAATGTATTGTTAAACTGCATTATACTTACAGTGTCAACCGTTTACAGTAACATGCACACTATCAACGCGTATACATTGAACTCGTAAACACAGAAGCATGAACACAAAATGATGAAGATGGAAAACAAAACATACGCTGAAAGTATGAACACATAAAAAGATAACAACACATGGTGAACGGACGACGAAGAGACTAGACGCTGCTCTTGTGTGGTAGGAGCGTGGCGTACGCGATTAAACGAGCGAAGGGTACGATCGCAAACATGAACATAATTCAAGAGAATATTGTAAAATACAAAAATTTCTATTATTATTAAAACCATATATAAAT ] [+] EMBL BX618611 [ AACATGTCACATGCAAATGCGGTTGTAATGCGATACAAGCTGATAAGGAGCGGAAATAGTAGCAACCCGATAGAGAGAATGAGAGGGTGCAAGAGAGAGAGAGAGAGAGATAAATAGAAAGAGACAGAAAGAGGGATAAGAAACAGGATAATACAATATACAAATGTATTGTTAAACTGCATTATACTTACAGTGTCAACCGTTTACAGTAACATGCACACTATCAACGCGTATACATTGAACTCGTACACACAGAAGCATGAACACAAAATGATGAAGATGGAAAACAAAACATACGCTGAAAGTATGAACACATAAAAAGATAACAACACATGGTGAACGGACGACGAAGAGACTAGACGCTGCTCTTGTGTGGTAGGAGCGTGGCGTACGCGATTAAACGAGCGAAGGGTACGATCGCAAACATGAACATAATTCAAGAGAATATTGTAAAATACAAAAATTTCTATTATTATTAAAACCATATATAAATATA ] [+] EMBL BX617096 [ GATACAAGCGGATAAGGAGCGGAAATAGTAGCAACCCGATAGAGAGAATGAGAGGGTGCAAGAGAGAGAGAGAGAGAGATAAATAGAAAGAGACAGAAAGAGGGATAAGAAACAGGATAATACAATATACAAATGTATTGTTAAACTGCATTATACTTACAGTGTCAACCGTTTACAGTAACATGCACACTATCAACGCGTATACATTGAACTCGTACACACAGAAGCATGAACACAAAATGATGAAGATGGAAAACAAAACATACGCTGAAAGTATGAACACATAAAAAGATAATAACACATGGTGAACGGACGACGAAGAGACTAGACGCTGCTCTTGTGTGGTAGGAGCGTGGCGTACGCGATTAAACGAGCGAAGGGTACGATCGCAAACATGAACATAATTCAAGAGAATATTGTAAAATACAAAAATTTCTATTATTATTAAAACCATATATAAATATACCGCAACAAAAAAGTATATATATATATATATATATATTAAAGACAAGGAAAAACTGTATCCCCTCTCGGCTAAG AAAATGTCGAGAAACGACAATAAAACTGTGAG ] [+] EMBL BX615236 [ CGTGGCGTACGCGATTAAACGAGCGAAGGGTACGATCGCAAACATGAACATAATTCAAGAGAATATTGTAAAATACAAAAATCTCTATTATTATTAAAACCACATATAAATATACCGCAACAAAAAAGTATATATATATATATATATATATCAAAGACAAGGAAAAACGGTATCCCCTCTCGGCTAAG AAAAGGTCGAGAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8092#0 GCCCCGAGGTNNAAAAAAAAAAAAACGAGCCAAAACAGAACGAAATGCGCTGAGTACGCG 60 consensus_8092#1 ------------------------------------------------------------ consensus_8092#0 AATGGTAACAGGTATTTTACCATCATACATTCAAATTTTTGCTGGATGAAAACACAAGAC 120 consensus_8092#1 AATGGTAACAGGTATTTTACCATCATACATTCAAATTTT-GCTGGATGAAAACACAAGAC 59 *************************************** ******************** consensus_8092#0 AAACAATTAACACACGTGTACTCTACCCTACACATAAGAAGCGCCATCACACAAAACTCA 180 consensus_8092#1 AAACAATTAACACACGTGTACTCTACCCTACACATAAGAAGCGCCATCACACAAAACTCA 119 ************************************************************ consensus_8092#0 TTCCACTAGAGAGAACAATCCAAAATCAGTCACACTAGCCACACCGTCAAGATAGTGCAA 240 consensus_8092#1 TTCCACTAGAGAGAACAATCCAAAATCAGTCACACTAGCCACACCGTCAAGATAGTGCAA 179 ************************************************************ consensus_8092#0 AACATGTCACATGCAAATGCGGTTGTAATGCGATACAAGCGGATAAGGAGCGGAAATAGT 300 consensus_8092#1 AACATGTCACATGCAAATGCGGTTGTAATGCGATACAAGCGGATAAGGAGCGGAAATAGT 239 ************************************************************ consensus_8092#0 AGCAACCCGATAGAGAGAATGAGAGGGTGCAAGAGAGAGAGAGAGACGAGATAAATAGAA 360 consensus_8092#1 AGCAACCCGATAGAGAGAATGAGAGGGTGCAAGAGAGAGAGAGAGA-GAGATAAATAGAA 298 ********************************************** ************* consensus_8092#0 AGAGACAGAAAGAGGGATAAGAAACAGGATAATACAATATACAAATGTATTGTTAAACTG 420 consensus_8092#1 AGAGACAGAAAGAGGGATAAGAAACAGGATAATACAATATACAAATGTATTGTTAAACTG 358 ************************************************************ consensus_8092#0 CATTATACTTACAGTGTCAACCGTTTACAGTAACATGCACACTATCAACGCGTATACATT 480 consensus_8092#1 CATTATACTTACAGTGTCAACCGTTTACAGTAACATGCACACTATCAACGCGTATACATT 418 ************************************************************ consensus_8092#0 GAACTCGTACACACAGAAGCATTGAACCCAAAATGATGAACATGGAAAACAAAACATACG 540 consensus_8092#1 GAACTCGTACACACAGAAGCAT-GAACACAAAATGATGAAGATGGAAAACAAAACATACG 477 ********************** **** ************ ******************* consensus_8092#0 CTGAAAGTATGAACACATAAAAAGATAACAACACATGGTGAACGGACGACGAAGAGACTA 600 consensus_8092#1 CTGAAAGTATGAACACATAAAAAGATAACAACACATGGTGAACGGACGACGAAGAGACTA 537 ************************************************************ consensus_8092#0 GACGCTGCTCTTGTGTGTTAGGAGCGTGGCGTACGCGATTAAACGAG-GAAGAGAGCGAG 659 consensus_8092#1 GACGCTGCTCTTGTGTGGTAGGAGCGTGGCGTACGCGATTAAACGAGCGAAGGGTACGAT 597 ***************** ***************************** **** * *** consensus_8092#0 ---AGAGATAGAGAGGGATAGAGAGA-----GAGAGAGAGGAAGGG----------ATAA 701 consensus_8092#1 CGCAAACATGAACATAATTCAAGAGAATATTGTAAAATACAAAAATTTCTATTATTATTA 657 * * ** * * * ***** * * * * ** ** * consensus_8092#0 AGAGCG-AGAGAGAGAGAGAGAGACAAAAAGA-ATGTGGAAA---ATGTAATTCTGATAA 756 consensus_8092#1 AAACCATATATAAATATACCGCAACAAAAAAGTATATATATATATATATATATATTAAAG 717 * * * * * * * * * * ******* ** * * * ** ** * * * * consensus_8092#0 ACAAGCAATTGGAGTGCCCATCTGGAATGGTGCACGGAAATAGGGATGAATAAAGAAATA 816 consensus_8092#1 ACAAGGAAAAACTGTATCCCCTCTCGGCTAAGAAAATGTCGAGAAACGACAATAAAACTG 777 ***** ** ** ** * * ** * ** * * ** * consensus_8092#0 TATT- 820 consensus_8092#1 TGAGA 782 * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||