These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8113#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1360 fasta sequence [CCGGGTGACCAGAAGGCGGCCGAGCCGCTGTACGCCCGCGATGCCGAGACGGCCGACGGTGGCATGTTCGCGAAGAAAAAGGAGGAACCCAAGTGGGTCCGCGTGATCGTGGTGTGCATCTATCTGTTTACGGTGTCGTTTGCCGCGCTGCTCCTCTCGCTCTACTACATCTTCTTCTGGACGCCGAAGATTGAGCCGTACGAGGACGACAGCCCCGAGCGGTTAACGGGGTGCGATCAGGACGATTAGCGCGGGAGTCGGCGCAGTCACACTCCCCACCAATCAATCCTTTCCCGGTTGCGGATGCAGCAGAGCAGTTACCTAGCTTTAAGAGACACACTGACACACCGAGCGGGGGTTCCGATGCGATAGGCGGCCAACGGGGGAACGGCACAGCAGCAGCAGCAGCATGAGCTACACGGCCGAGGAGAAGATAAAGCTCGCGGGCGAAGACTCGAAGGACCGGCTGTACGAGGCGAAACAGAACCAGAAGGCGATACGCATCCTGACGGTGGCGGCGTACGTGCTGTGCGTGTCGCTGGTCGCCATCATGCTGTCGCTCTACTACATCTTCTTCTGGGATCCGAGCACGAACCCCGATGCAGCAGAAAACGCAAACGATCGATACCCTTGTCATACCGGACCATCTGGCGATCCGGCTGGCGAACCGCAGCGAGGTGCCGGCGAGCCGCTTTTTCCACACCTTCTACCAGCACCTGGTGCAGGATCGCGTCGTCAAGATCCGGAAGGAGGTGCAGATCTCGGAGTCGACCAATCTCACCAAACTGATCGAGCTGTACCAT------CAGCAGCAGCAGCAGCAGCAGCAGCACCGTCCGGGCAAGCAGTCGCCGCCCGACGGTCCACTCTCCTACCAGGTGCAGGCGGAACAGCAGCCAGGCTCGGCC--GCTAGCGATGGGCCCCGGCTGCACACGGACGAGGACGACGGTAGCGACGATTACGAGCAGAGCGGCAACTACGAGCTGTACTCCAACCACACCACCATCCAGCTCGATGCCGATGAAACCGGGCCGCAATGAGAGGTCATTCTCGCTGCATTGCTTGGAGCCCGCAGACGCACCCCCGGCTTAGTGTGCTG------CACACACACACACAGCGGATTACAGTACAGGATTAGTCACGACTATCTCTCACAC--ACACACACGCATCTCGGTGCGGAACTATACATACAGGAATTGCGCGCACACGTTTTCGTACGATTTTAATGCACCAAACACCACGACCCCCCGCACGTAACTGCTACAAACTGAGGAAGAGGAAACAATTATTATATACCTATATAAATATATACATATATACACGGCACCGACGGCAGTACA-GGGAAAGTATGCGCTGCGAGAGGTGG] [+] EMBL BM618684 [CCGGGTGACCAGAAGGCGGCCGAGCCGCTGTACGCCCGCGATGCCGAGACGGCCGACGGTGGCATGTTCGCGAAGAAAAAGGAGGAACCCAAGTGGGTCCGCGTGATCGTGGTGTGCATCTATCTGTTTACGGTGTCGTTTGCCGCGCTGCTCCTCTCGCTCTACTACATCTTCTTCTGGACGCCGAAGATTGAGCCGTACGAGGACGACAGCCCCGAGCGGTTAACGGGGTGCGATCAGGACGATTAGCGCGGGAGTCGGCGCAGTCACACTCCCCACCAATCAATCCTTTCCCGGTTGCGGATGCAGCAGAGCAGTTACCTAGCTTTAAGAGACACACTGACACACCGAGCGGGGGTTCCGATGCGATAGGCGGCCAACGGGGGAACGGCACAGCAGCAGCAGCAGCATGAGCTACACGGCCGAGGAGAAGATAAAGCTCGCGGGCGAAGACTCGAAGGACCGGCTGTACGAGGCGAAACAGAACCAGAAGGCGATACGCATCCTGACGGTGGCGGCGTACGTGCTGTGCGTGTCGCTGGTCGCCATCATGCTGTCGCTCTACTACATCTTCTTCTGGGATCCGAGCACGAACCCCGATGC ] [+] EMBL BM627254 [ ccgCACTGACACACCGAGCGGGGGTTCCGATGCGATAGGCGGCCAACGGGGGAACGGCACAGCAGCAGCAGCAGCATGAGCTACACGGCCGAGGAGAAGATAAAGCTCGCGGGCGAAGACTCGAAGGACCGGCTGTACGAGGCGAAACAGAACCAGAAGGCGATACGCATCCTGACGGTGGCGGCGTACGTGCTGTGCGTGTCGCTGGTCGCCATCATGCTGTCGCTCTACTACATCTTCTTCTGGGATCCGAGCACGAA CCCGATGCAGCAGAAAACGCAAACGATCGATACCCTTGTCATACCGGACCATCTGGCGATCCGGCTGGCGAACCGCAGCGAGGTGCCGGCGAGCCGCTTTTTCCACACCTTCTACCAGCACCTGGTGCAGGATCGCGTCGTCAAGATCCGGAAGGAGGTGCAGATCTCGGAGTCGACCAATCTCACCAAACTGATCGAGCTGTACCATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCGTCCGGGCAAGCAGTCGCCGCCCGACGGTCCACTCTCCTACCAGGTGCAGGCGGAACAGCAGCCAGGCTCGGCC GCTAGCGATGGGCCCCGACTGCACACGGACGAGGACGACGGTAGCGACGATTACGAGCAGAGCGGCAACTACGAGCTGTACTCCAACCACACCACCATCCAGCTCGATGCCGATGAAACCGGGC ] [+] EMBL BM635054 [ ccgACACCTTCTACCAGCACCTGGTGCAGGATCGCGTCGTCAAGATCCGGAAGGAGGTGCAGATCTCGGAGTCGACCAATCTCACCAAACTGATCGAGCTGTACCAT CAGCAGCAGCAGCAGCAGCAGCAGCACCGTCCGGGCAAGCAGTCGCCGCCCGACGGTCCACTCTCCTACCAGGTGCAGGCGGAACAGCAGCCAGG CGGCCGAGCTAGCGATGGGCCCCGGCTGCACACGGACGAGGACGACGGTAGCGACGATTACGAGCAGAGCGGCAACTACGAGCTGTACTCCAACCACACCACCATCCAGCTCGATGCCGATGAAACCGGGCCGCAATGAGAGGTCATTCTCGCTGCATTGCTTGGAGCCCGCAGACGCACCCCCGGCTTAGTGTGCTGCACACACACACACACACACAGCGGATTACAGTACAGGATTAGTCACGACTATCTCTCACAC ACACACACGCATCTCGGTGCGGAACTATACATACAGGAATTGCGCGCACACGTTTTCGTACGATTTTAATGCACCAAACACCACGACCCCCCGCACGTAACTGCTACAAACTGAGGAAGAGGAAACAATTATTATATACCTATATAAATATATACATATATACACGGCACCGACGGCAGTACAGGGGAAAGTATGCGCTGCGAGAGGT ] [+] EMBL BM597957 [ ccgAGCACCTGGTGCAGGATCGCGTCGTCAAGATCCGGAAGGAGGTGCAGATCTCGGAGTCGACCAATCTCACCAAACTGATCGAGCTGTACCAT CAGCAGCAGCAGCAGCAGCAGCAGCACCGTCCGGGCAAGCAGTCGCCGCCCGACGGTCCACTCTCCTACCAGGTGCAGGCGGAACAGCAGCCAGGCTCGGCC GCTAGCGATGGGCCCCGGCTGCACACGGACGAGGACGACGGTAGCGACGATTACGAGCAGAGCGGCAACTACGAGCTGTACTCCAACCACACCACCATCCAGCTCGATGCCGATGAAACCGGGCCGCAATGAGAGGTCATTCTCGCTGCATTGCTTGGAGCCCGCAGACGCACCCCCGGCTTAGTGTGCTG CACACACACACACAGCGGATTACAGTACAGGATTAGTCACGACTATCTCTCACACATACACACACGCATCTCGGTGCGGAACTATACATACAGGAATTGCGCGCACACGTTTTCGTACGATTTTAATGCACCAAACACCACGACCCCCCGCACGTAACTGCTACAAACTGAGGAAGAGGAAACAATTATTATATACCTATATAAATATATACATATATACACGGCACCGACGGCAGTACA GGGAAGGTATGCGCTGCGAGAGGTGG] consensusID : consensus_8113#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 626 fasta sequence [AATCGGCCGAGGTATATACCTATATAAATATATACATATATACACGGCACCGACGGCAGTACAGGAAGGTATGCGCTGCGAGAGGTGGCATGAGGGACAGACGAGCGCGGGCGCGTATCCGGCGCATGGTTTGTTGCGCACGCCTGGGGAGGAAGGAAAACGCGTGCTACCAGTGGAGTAGAGTGTAACTTTGTGGCCTAAAACCGAATTAACGTGCGTGCGTGTGTGTGTCACTAGCCCAACCAAATGTGTGGAACGCAAAACAAAAATCAAATCTCCAAAACAGACACACTTTCCCAACCCATCCGAGCGGACCGTGCCAAGGCCGCGCGGCGGAAGATGAGTTGGGCGGGCAACTCTTGCAATAAACTGCACACCCAGGATGTACGGGGCAGGTAGGGAAGAGGGCACCATTACAAAGACAGCAGCTATCGGTTGTACCTTCCCCC-CC-CCCTCCACGCCCTTTGGGCGTTTTCCTCTCCCGCGAATGTTTTAAACGTGAAGATATTTAACTATATTAACCGGATAGCGTTTTAGTACCTTTTGGACGAGCTAGCAAGTTTATAGCGAGCGAGAGAGAGAAAGAGAGAGAGGGTATGTGTGTGTGTGTGTGGAGAGAGAGAGAG] [+] EMBL AL696977 [AATCGGCCGAGGTATATACCTATATAAATATATACATATATACACGGCACCGACGGCAGTACAGGAAGGTATGCGCTGCGAGAGGTGGCATGAGGGACAGACGAGCGCGGGCGCGTATCCGGCGCATGGTTTGTTGCGCACGCCTGGGGAGGAAGGAAAACGCGTGCTACCAGTGGAGTAGAGTGTAACTTTGTGGCCTAAAACCGAATTAACGTGCGTGCGTGTGTGTGTCACTAGCCCAACCAAATGTGGGGAACGCAAAACAAAAATCAAATCTCCAAAACAGACACACTTTCCCAA CCATCCGAGCGGACCGTGCCAAGGCCGCGCGGTGTAAGATGAGTTGGGCGGGCAACTCTTGCAATAAACTGCACACCCAGGATGTACGGGGCAGGTAGGGAAGGGGGCACCATTACAAAGACAGCAGCTATCGGTTGTACCTTCCCCCACCACCCTCCGGGCCTTTTGGGCGTTTTCCTCTCCCGCGAA ] [+] EMBL BX620796 [ CTAAAACCGAATTAACGTGCGTGCGTGTGTGTGTCACTAGCCCAACCAAATGTGTGGAACGCAAAACAAAAATCAAATCTCCAAAACAGACACACTTTCCCAACCCATCCGAGCGGACCGTGCCAAGGCCGCGCGGCGGAAGATGAGTTGGGCGGGCAACTCTTGCAATAAACTGCACACCCAGGATGTACGGGGCAGGTAGGGAAGAGGGCACCATTACAAAGACAGCAGCTATCGGTTGTACCTTCCCCC CC CCCTCCACGCCCTTTGGGCGTTTTCCTCTCCCGCGAATGTTTTAAACGTGAAGATATTTAACTATATTAACCGGATAGCGTTTTAGTACCTTTTGGACGAGCTAGCAAGTTTATAGCGAGCGAGAGAGAGAAAGAGAGAGAGG ] [+] EMBL BX625713 [ CACTAGCCCAACCAAATGTGTGGAACGCAAAACAAAAATCAAATCTCCAAAACAGACACACTTTCCCAACCCATCCGAGCGGACCGTGCCAAGGCCGCGCGGCGGAAGATGAGTTGGGCGGGCAACTCTTGCAATAAACTGCACACCCAGGATGTACGGGGCAGGTAGGGAAGAGGGCACCATTACAAAGACAGCAGCTATCGGTTGTACCTTCCCCC CC CCCTCCACGCCCTTTGGGCGTTTTCCTCTCCCGCGAATGTTTTAAACGTGAAGATATTTAACTATATTAACCGGATAGCGTTTTAGTACCTTTTGGACGAGCTAGCAAGTTTATAGCGAGCGAGAGAGAGAAAGAGAGAGAGGGTATGT ] [+] EMBL BX617389 [ CCAACCCATCCGAGCGGACCGTGCCAAGGCCGCGCGGCGGAAGATGAGTTGGGCGGGCAACTCTTGCAATAAACTGCACACCCAGGATGTACGGGGCAGGTAGGGAAGAGGGCACCATTACAAAGACAGCAGCTATCGGTTGTACC TCCCCC CC CCCTCCACGCCCTTTGGGCGTTTTCCTCTCCCGCGAATGTTTTAAACGTGAAGATATTTAACTATATTAACCGGATAGCGTTTTAGTACCTTTTGGACGAGCTAGCAAGTTTATAGCGAGCGAGAGAGAGAAAGAGAGAGAGGGTATGTGTGTGTGTGTGTGGAGAGAGAGAGAG] [+] EMBL BX616434 [ GCGCGGCGGAAGATGAGTTGGGCGGGCAACTCTTGCAATAAACTGCACACCCAGGATGTACGGGGCAGGTAGGGAAGAGGGCACCATTACAAAGACAGCAGCTATCGGTTGTACCTTCCCCC CC CCCTCCACGCCCTTTGGGCGTTTTCCTCTCCCGCGAATGTTTTAAACGTGAAGATATTTAACTATATTAACCGGATAGCGTTTTAGTACCTTTTGGACGAGCTAGCAAGTTTATAGCGAGCGAGAGAGAGAAAGAGAGAGAGGGTATGTGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8113#0 CCGGGTGACCAGAAGGCGGCCGAGCCGCTGTACGCCCGCGATGCCGAGACGGCCGACGGT 60 consensus_8113#1 ------------------------------------------------------------ consensus_8113#0 GGCATGTTCGCGAAGAAAAAGGAGGAACCCAAGTGGGTCCGCGTGATCGTGGTGTGCATC 120 consensus_8113#1 ------------------------------------------------------------ consensus_8113#0 TATCTGTTTACGGTGTCGTTTGCCGCGCTGCTCCTCTCGCTCTACTACATCTTCTTCTGG 180 consensus_8113#1 ------------------------------------------------------------ consensus_8113#0 ACGCCGAAGATTGAGCCGTACGAGGACGACAGCCCCGAGCGGTTAACGGGGTGCGATCAG 240 consensus_8113#1 ------------------------------------------------------------ consensus_8113#0 GACGATTAGCGCGGGAGTCGGCGCAGTCACACTCCCCACCAATCAATCCTTTCCCGGTTG 300 consensus_8113#1 ------------------------------------------------------------ consensus_8113#0 CGGATGCAGCAGAGCAGTTACCTAGCTTTAAGAGACACACTGACACACCGAGCGGGGGTT 360 consensus_8113#1 ------------------------------------------------------------ consensus_8113#0 CCGATGCGATAGGCGGCCAACGGGGGAACGGCACAGCAGCAGCAGCAGCATGAGCTACAC 420 consensus_8113#1 ------------------------------------------------------------ consensus_8113#0 GGCCGAGGAGAAGATAAAGCTCGCGGGCGAAGACTCGAAGGACCGGCTGTACGAGGCGAA 480 consensus_8113#1 ------------------------------------------------------------ consensus_8113#0 ACAGAACCAGAAGGCGATACGCATCCTGACGGTGGCGGCGTACGTGCTGTGCGTGTCGCT 540 consensus_8113#1 ------------------------------------------------------------ consensus_8113#0 GGTCGCCATCATGCTGTCGCTCTACTACATCTTCTTCTGGGATCCGAGCACGAACCCCGA 600 consensus_8113#1 AATCGGCCGAGGTATATACCTATA-TAAATATATACATATATACACGGCACCGACGGCAG 59 *** * * * ** ** ** ** * * * **** ** * consensus_8113#0 TGCAGCAGAAAACGCAA-ACGATCGATACCCTT---GTCATACCGGACCATCTGGCGATC 656 consensus_8113#1 TACAGGAAGGTATGCGCTGCGAGAGGTGGCATGAGGGACAGACGAGCGCGGGCGCGTATC 119 * *** * * ** *** * * * * * ** ** * * * *** consensus_8113#0 CGGCTGGCGAACCGCAGCGAGGTGCCGGCGAGCCGCTTTTTCCACACCTTCTACCAGCAC 716 consensus_8113#1 CGGCGCATGGTTTGTTGCGCACGCCTGGGGAGGAAGGAA---AACGCGTGCTACCAGTGG 176 **** * * *** * ** *** ** * * ******* consensus_8113#0 C-TGGTGCAGGATCGCGTCGTCAAGATCCGGAAGGAGGTGCAGATCTCGGAGT-CGACCA 774 consensus_8113#1 AGTAGAGTGTAACTTTGTGGCCTAAAACCGAATTAACGTGCGTGCGTGTGTGTGTCACTA 236 * * * * ** * * * * *** * * **** * * ** ** * consensus_8113#0 ATCTCACCAAACTGATCGAGCTGTACCATCAGCAGCAG-CAGCAGCAGCAGCAGCACCGT 833 consensus_8113#1 GCCCAACCAAATGTGTGGAAC-GCAAAACAAAAATCAAATCTCCAAAACAGACACACTTT 295 * ****** * ** * * * * * * ** * * *** *** * consensus_8113#0 CCGGGCAAGCAGTCGCCGCCCGACGGTCCACTCTCCTACCAGGTGCAGGCGGAACAG-CA 892 consensus_8113#1 CC---CAACCCATC-CGAGCGGACCGTGCCAAGGCCGCGCGGCGGAAGATGAGTTGGGCG 351 ** *** * ** * * *** ** * ** * * * ** * * * consensus_8113#0 GCCAGGCTCGGCCGCTAGCGATGGGCCCCGGCTGCACACGGACGAGGACGACGGTAGCGA 952 consensus_8113#1 GGCAACTCTTGCAATAAACTGCACACCCAGGATGTACG-GGGCAGGTAGGGAAGAGGGCA 410 * ** ** * * *** ** ** ** ** * * * * * * * consensus_8113#0 CGATTACGAGCAGAGCGGCAACTACGAGCTGTACTCCAACCACACCACCATCCAGCTCGA 1012 consensus_8113#1 CCATTACAAA---GACAGCAGCTATCGGTTGTACCTT--CCCCCCCCCCTCCACGCCCTT 465 * ***** * * *** *** * ***** ** * ** ** * ** * consensus_8113#0 TGCCGATGAAACCGGGCCGCAATGAGAGGTCATTCTCGCTGCATTGCTTGGAGCCCGCAG 1072 consensus_8113#1 TGGGCGTTTTCCTCTCCCGCGA----ATGTTTTAAACGTGAAGATATTTA-ACTATATTA 520 ** * * **** * * ** * ** * ** * consensus_8113#0 ACGCACCCCCGGCTTAGTGTGCTGCACACACACACACAGCGGATTACAGTACAGGATTAG 1132 consensus_8113#1 ACCGGATAGCGTTTTAGTACCTTTTGGACGAGCTAGCA--AGTTTATAGCG-AGCGAGAG 577 ** ** ***** * ** * ** * *** ** ** ** consensus_8113#0 TCACGACTATCTCTCACACACACACACGCATCTCGGTGCGGAACTATACATACAGGAATT 1192 consensus_8113#1 AGAGAAAGAGA----GAGAGGGTATGTGTGTGTGTGTGTGGAGAGAGAGAGAG------- 626 * * * * * * * *** *** * * * * consensus_8113#0 GCGCGCACACGTTTTCGTACGATTTTAATGCACCAAACACCACGACCCCCCGCACGTAAC 1252 consensus_8113#1 ------------------------------------------------------------ consensus_8113#0 TGCTACAAACTGAGGAAGAGGAAACAATTATTATATACCTATATAAATATATACATATAT 1312 consensus_8113#1 ------------------------------------------------------------ consensus_8113#0 ACACGGCACCGACGGCAGTACAGGGAAAGTATGCGCTGCGAGAGGTGG 1360 consensus_8113#1 ------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||