|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8116#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1534 fasta sequence
[CCGGTGTGGTGTGTGGTGCAGTGCGTGTTTCTGGTTGCAATTCTTCGTCCCGTCCCGTTGCACATTCCACCTCATCAATTCGCAGGGGAAAATGGTACTTACAAACTGCATCCGCTTCACGGCCACGGCAGCGGGCAAGTTCGGTCAGCGCGAGCTACTGTGCAACATCCGCAGCCTAGCAACCGCTACCGTCGCATCAACACCGAGCACCAACAGCACCTCCTCACCGTCCGGCTGGGAGCAGCAACGGCGCCAGCATGCTTCGTACGGCAAAATGTCCGGCTGGCAGATACACGCGTACGGAGTGCCGCAGGAAGAGATACAGTTCAGCGACGGGATTAAGATGCCGATCCTAAAGTCACCCACCCAGCTGCTGGTGCGGGTGAAAGCGGCCTCGGTCAACCCGATCGATGTGGCCATGATCAACGGATACG-GTGCATCGGTGCTGAATGCGATGCGCTGCAAGGATGGCGGCATCGAGTTTCCGCTCGTGCTCGGGCGCGAC-TTTTGCGGCGAGATCGTCC-AGAAGGGGCTGGGCATTTCGAGCCGCGAGCTCGAGGTAGGCGACGAGGTGTGGGGCGTCGTGCCGGTGCACTTGCAAGGTTGCCATGCCGATTACGTCGTGGTGGAGAAGTACTGTCTGTTCAAGAAACCTTCCAACCTGAGCAAAATAGACGCGAGTGCTATCCTGTACGCTGGTCTGACGGCCTGGTCGGGGCTTTACATTACCGGCCATCTAGGGGATTTGCTCGGTGCCATCTCGCCAGTCGGCGGTGGCGCAGGGAAGAAGGTGCTAGTGCTCGGGGCGGCCGGCGGCGTCGGTACGCTCGCCGTCCAGATGCTGCTGGCTGAGGGGGTGGAAGTGTTCGCTACCTGCTCCCCGGACGCGATGCAGATGGTCAACAATCTCGGTGTAAAGTACGTGCTGGACTACACGGACCCGGCGCACGTGCAGAACGTGGCCAGCGTTGGAAGGTTCGACATCGTGCTGGATTGTGCGGGGAAGGGCACGGAATACGCCAACGAGGTACCGTGGCTGTACGATCAGTACATTACGTTCAACTCGCCCGTACTTAAAAACATTGACGCCGATGG-TTCGCGGCCAGGATGTACCAAAATGCGCTCAATCTGGTGCGCAACAATGCGGCCGCCCTCAGCACCCGGCAGGGACTGGTGAAGTGGGGCTACTTTGTGCCGGCACCGCAAGGTATCGCCTACCTGCAGCGCCTGGCCGAGAAGGGCAAGCTGCTGCCGGTGGTGGAGAAAGTGTTCCCGTACGGCAGTACGCCCGAGGCGTACGAGCGTCGCGCAGAAGCATTTACGCGGGAAGGTTGTGATCGATTTCGAATAAGGCGAACAAGGAGCAGGTCTCGAAATGAAGGTGGATTTAGGTAAGATAGTGAAACGGTTAAAAGAGAAGAGATAAAGAAACTAGCCAGAGAACAGGAGACATAGATAACGAATTATGTATTGTAGCGAATCGGACACATCACGTGCTGCTGCTACGTGTGATTATATGGTAGAAATTAAAGTG]
[+] EMBL BM601161 [CCGGTGTGGTGTGTGGTGCAGTGCGTGTTTCTGGTTGCAATTCTTCGTCCCGTCCCGTTGCACATTCCACCTCATCAATTCGCAGGGGAAAATGGTACTTACAAACTGCATCCGCTTCACGGCCACGGCAGCGGGCAAGTTCGGTCAGCGCGAGCTACTGTGCAACATCCGCAGCCTAGCAACCGCTACCGTCGCATCAACACCGAGCACCAACAGCACCTCCTCACCGTCCGGCTGGGAGCAGCAACGGCGCCAGCATGCTTCGTACGGCAAAATGTCCGGCTGGCAGATACACGCGTACGGAGTGCCGCAGGAAGAGATACAGTTCAGCGACGGGATTAAGATGCCGATCCTAAAGTCACCCACCCAGCTGCTGGTGCGGGTGAAAGCGGCCTCGGTCAACCCGATCGATGTGGCCATGATCAACGGATACG GTGCATCGGTGCTGAATGCGATGCGCTGCAAGGATGGCGGCATCGAGTTTCCGCTCGTGCTCGGGCGCGAC TTTTGCGGCGAGATCGTCC AGAAGGGGCTGGGCATTTCGAGCCGCGAGCTCGAGGTAGGCGACGAGGTGTGGGGCGTCGTGCCGGTGCACTTGCAAGGTTGCCATGCCGATTACGTCGTGGTGGAGAAGTACTGTCTGTTCAAGAAACCTTCCAACCTGAGCAAAATAG ]
[+] EMBL BM601794 [CCGGTGTGGTGTGTGGTGCAGTGCGTGTTTCTGGTTGCAATTCTTCGTCCCGTCCCGTTGCACATTCCACCTCATCAATTCGCAGGGGAAAATGGTACTTACAAACTGCATCCGCTTCACGGCCACGGCAGCGGGCAAGTTCGGTCAGCGCGAGCTACTGTGCAACATCCGCAGCCTAGCAACCGCTACCGTCGCATCAACACCGAGCACCAACAGCACCTCCTCACCGTCCGGCTGGGAGCAGCAACGGCGCCAGCATGCTTCGTACGGCAAAATGTCCGGCTGGCAGATACACGCGTACGGAGTGCCGCAGGAAGAGATACAGTTCAGCGACGGGATTAAGATGCCGATCCTAAAGTCACCCACCCAGCTGCTGGTGCGGGTGAAAGCGGCCTCGGTCAACCCGATCGATGTGGCCATGATCAACGGATACG GTGCATCGGTGCTGAATGCGATGCGCTGCAAGGATGGCGGCATCGAGTTTCCGCTCGTGCTCGGGCGCGACTTTTTGCGGCGAATTCGTCCAAGAAGGGGCTGGGCATTTCGAGCCGCGAGCTCGAGGTAGGCGACGA ]
[+] EMBL BM611203 [ ccgGTGGTGTGTGGTGCAGTGCGTGTTTCTGGTTGCAATTCTTCGTCCCGTCCCGTTGCACATTCCACCTCATCAATTCGCAGGGGAAAATGGTACTTACAAACTGCATCCGCTTCACGGCCACGGCAGCGGGCAAGTTCGGTCAGCGCGAGCTACTGTGCAACATCCGCAGCCTAGCAACCGCTACCGTCGCATCAACACCGAGCACCAACAGCACCTCCTCACCGTCCGGCTGGGAGCAGCAACGGCGCCAGCATGCTTCGTACGGCAAAATGTCCGGCTGGCAGATACACGCGTACGGAGTGCCGCAGGAAGAGATACAGTTCAGCGACGGGATTAAGATGCCGATCCTAAAGTCACCCACCCAGCTGCTGGTGCGGGTGAAAGCGGCCTCGGTCAACCCGATCGATGTGGCCATGATCAACGGATACG GTGCATCGGTGCTGAATGCGATGCGCTGCAAGGATGGCGGCATCGAGTTTCCGCTCGTG ]
[+] EMBL BM591789 [ ccgCGTCCCGTTGCACATTCCACCTCATCAATTCGCAGGGGAAAATGGTACTTACAAACTGCATCCGCTTCACGGCCACGGCAGCGGGCAAGTTCGGTCAGCGCGAGCTACTGTGCAACATCCGCAGCCTAGCAACCGCTACCGTCGCATCAACACCGAGCACCAACAGCACCTCCTCACCGTCCGGCTGGGAGCAGCAACGGCGCCAGCATGCTTCGTACGGCAAAATGTCCGGCTGGCAGATACACGCGTACGGAGTGCCGCAGGAAGAGATACAGTTCAGCGACGGGATTAAGATGCCGATCCTAAAGTCACCCACCCAGCTGCTGGTGCGGGTGAAAGCGGCCTCGGTCAACCCGATCGATGTGGCCATGATCAACGGATACG GTGCATCGGTGCTGAATGCGATGCGCTGCAAGGATGGCGGCATCGAGTTTCCGCTCGTGCTCGGGCGCGAC TTTTGCGGCGAGATCGTCC AGAAGGGGCTGGGCATTTCGAGCCGCGAGCTCGAGGTAGGCGACGAGGTGTGGGGCGTCGTGCCGGTGCACTTGCAAGGTTGCCATGCCGATTACGTCGTGGTGGAGAAGTACTGTCTGTTCAAGAAACCTTCCAACCTGAGCAAAATAGACGCGAGCGCCATCCTGTACGCTGGTCTGAC ]
[+] EMBL CNS08I5D [ tcCCGAGCACCAACAGCACCTCCTCACCGTCCGGCTGGGAGCAGCCACGGCGCCA CATGCTTCGTACGGCAAAATGTCCGGCTGGCAGATACACGCGTACGGGGT ACGCA GAAGAGATACAGTTCAGCGACGGGATTAAGATGCCGATCCTAAAGTCACCCACCCAGCTGCTGGTGCGGGTGAAA CGGCCTCGGTCAACCCGATCGATGTGGCCATGATCAACGGATACGCGTGCATCGGTGCTGAATGCGATGCGCTGCAA GATGGCGGCATCGAGTTTCCGCTCGTGCTCGGGCGCGAC TTTTGCGGCGAGATCGTCC AGAAGGGGCTGGGCATTTCGAGCCGCGAGCTCGAGGTAGGCGACGAGGTGTGGGGCGTCGTGCCGGTGCACTTGCAAGGTTGCCATGCCGATTACGTCGTAGTGGAGAAGTACTGTCTGTTCAAGAAACCTTCCAACCTGAGCAAAATAGACGCGAGTGCTATCCTGTACGCTGGTCTGACGGCCTGGTCGGGGCTTTACATTACCGGCCATCTAGGGGATTT ]
[-] EMBL CNS08DAV [ TCGTGCCGGTGCACTTGCAAGGTTGCCATGCCGATTACGTCGTAGTGGAGAAGTACTGTCTGTTCAAGAAACCTTCCAACCTGAGCAAAATAGACGCGAGTGCTATCCTGTACGCTGGTCTGACGGCCTGGTCGGGGCTTTACATTACCGGCCATCTAGGGGATTTGCTCGGTGCCATCTCGCCAGTCGGCGGTGGCGCAGGGAAGAAGGTGCTAGTGCTCGGGGCGGCCGGCGGCGTCGGTACGCTCGCCGTCCAGATGCTGCTGGCTGAGGGGGTGGAAGTGTTCGCTACCTGCTCCCCGGACGCGATGCAGATGGTCAACAATCTCGGTGTAAAGTACGTGCTGGACTACACGGACCCGGCGCACGTGCAGAACGTGGCCAGCGTTGGAAGGTTCGACATCGTGCTGGATTGTGCGGGGAAGGGCACGGAATACGCCAACGAGGTACCGTGGCTGTACGATCAGTACATTACGTTCAACTCGCCCGTACTTAAAAACATTGACGCCGATGG TTCGCGGCC ]
[+] EMBL CNS08DAU [ GAGAAGTACTGTCTGTTCAAGAAACCTTCCAACCTGAGCAAAATAGACGCGAGTCCTATCCTGTACGCTGGTCTGACGGCCTGGTCGGGGCTTTACATTACCGGCCATCTAGGGGATTTGCTCGGTGCCATCTCGCCAGTCGGCGGTGGCGCAGGGAAGAAGGTGCTAGTGCTCGGGGCGGCCGGCGGCGTCGGTACGCTCGCCGTCCAGATGCTGCTGGCTGAGGGGGTGGAAGTGTTCGCTACCTGCTCCCCGGACGCGATGCAGATGGTCAACAATCTCGGTGTAAAGTACGTGCTGGACTACACGGACCCGGCGCACGTGCAGAACGTGGCCAGCGTTGGAAGGTTCGACATCGTGCTGGATTGTGCGGGGAAGGGCACGGAATACGCCAACGAGGTACCGTGGCTGTACGATCAGTACATTACGTTCAACTCGCCCGTACTTAAAAACATTGACGCCGATGGCTTCGCGGCCAGGATGTACCAAAATGCGCTCAATC ]
[-] EMBL CNS08I5E [ GTGCGGGGAAGGGCACGGAATACGCCAACGAGGTACCGTGGCTGTACGATCAGTACATTACGTTCAACTCGCCCGTACTTAAAAACATTGACGCCGAATG CTCGCGGCCAGGATGTACCAAAATGCGCTCAATCTGGTGCGCAACAATGCGGCCGCCCTCAGCACCCGGCAGGGACTGGTGAAGTGGGGCTACTTTGTGCCGGCACCGCAAGGTATCGCCTACCTGCAGCGCCTGGCCGAGAAGGGCAAGCTGCTGCCGGTGGTGGAGAAAGTGTTCCCGTACGGCAGTACGCCCGAGGCGTACGAGCGTCGCGCAGAAGCATTTACGCGGGAAGGTTGTGATCGATTTCGAATAAGGCGAACAAGGAGCAGGTCTCGAAATGAAGGTGGATTTAGGTAAGATAGTGAAACGGTTAAAAGAGAAGAGATAAAGAAACTAGCCAGAGAACAGGAGACATAGATAACGAATTATGTATTGTAGCGAATCGGACACATCACGTGCTGCTGCTACGTGTGATTATATGGTAGAAATTAAAGTG]
consensusID : consensus_8116#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 631 fasta sequence
[CGAGCAGATNGGCCGAGGNGNGNAGNCAGCATGCTTCGTACGGCAAAATGTCCGGCTGGCTAGATACACGCGTACGGAGTGCCGCAGGAAGAGATACAGTTCAGCGACGGGATTAAGATGCCGATCCTAAAGTCACCCACCCAGCTGCTGGTGCGGGTGAAAGCGGCTCGGTCAACCCGATCGATGTGGCCATGATCAACGGATACGGTGCATCGGTGCTGAATGCGATGCGCTGCAAGGATGGCGGCATCTAGTTTCCGCTCGTGCTCGGGCGCGACTTTTGCGGGAGATCGTCCAGAAGGGGCTGGGCATTTTCGAGCCGCGAGCTCGAGGTAGCGACGAGGTGTGGGGCGTCGTGCCGGTGCACTTGCAAGGTTGCCATGCCGATTACGGTCGTGGTGGCAGAAGTACTGTCTGTTCCAAGAAACCTTCCAACTGAGCCAAAATAGACGCGAGCGCCATCCTGTACGCTGGTCTGACGGCCTGGTCGGGGCTGTACATTACCGGCATCTGGGGGATTTGCTCGGGGCCATCTCGCCGGTCGGCGGTGGCGCAGGGAACGAAGGTGCTCGTGCTCGGGGCGGCCGGCGGCCGTCGGTACCGCTCGCCGTCCAGATGCTGTGGGCCGAGG]
[+] EMBL AL696859 [CGAGCAGATNGGCCGAGGNGNGNAGNCAGCATGCTTCGTACGGCAAAATGTCCGGCTGGCTAGATACACGCGTACGGAGTGCCGCAGGAAGAGATACAGTTCAGCGACGGGATTAAGATGCCGATCCTAAAGTCACCCACCCAGCTGCTGGTGCGGGTGAAAGCGGCTCGGTCAACCCGATCGATGTGGCCATGATCAACGGATACGGTGCATCGGTGCTGAATGCGATGCGCTGCAAGGATGGCGGCATCTAGTTTCCGCTCGTGCTCGGGCGCGACTTTTGCGGGAGATCGTCCAGAAGGGGCTGGGCATTTTCGAGCCGCGAGCTCGAGGTAGCGACGAGGTGTGGGGCGTCGTGCCGGTGCACTTGCAAGGTTGCCATGCCGATTACGGTCGTGGTGGCAGAAGTACTGTCTGTTCCAAGAAACCTTCCAACTGAGCCAAAATAGACGCGAGCGCCATCCTGTACGCTGGTCTGACGGCCTGGTCGGGGCTGTACATTACCGGCATCTGGGGGATTTGCTCGGGGCCATCTCGCCGGTCGGCGGTGGCGCAGGGAACGAAGGTGCTCGTGCTCGGGGCGGCCGGCGGCCGTCGGTACCGCTCGCCGTCCAGATGCTGTGGGCCGAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8116#0 CCGGTGTGGTGTGTGGTGCAGTGCGTGTTTCTGGTTGCAATTCTTCGTCCCGTCCCGTTG 60
consensus_8116#1 ------------------------------------------------------------
consensus_8116#0 CACATTCCACCTCATCAATTCGCAGGGGAAAATGGTACTTACAAACTGCATCCGCTTCAC 120
consensus_8116#1 ------------------------------------------------------------
consensus_8116#0 GGCCACGGCAGCGGGCAAGTTCGGTCAGCGCGAGCTACTGTGCAACATCCGCAGCCTAGC 180
consensus_8116#1 ------------------------------------------------------------
consensus_8116#0 AACCGCTACCGTCGCATCAACACCGAGCACCAACAGCACCTCCTCACCGTCCGGCTGGGA 240
consensus_8116#1 -----------------------------------------------CGAGCAGATNGGC 13
** * * * **
consensus_8116#0 GCAGCAACGGCGCCAGCATGCTTCGTACGGCAAAATGTCCGGCTGGC-AGATACACGCGT 299
consensus_8116#1 CGAGGNGNGNAGNCAGCATGCTTCGTACGGCAAAATGTCCGGCTGGCTAGATACACGCGT 73
** * * ********************************** ************
consensus_8116#0 ACGGAGTGCCGCAGGAAGAGATACAGTTCAGCGACGGGATTAAGATGCCGATCCTAAAGT 359
consensus_8116#1 ACGGAGTGCCGCAGGAAGAGATACAGTTCAGCGACGGGATTAAGATGCCGATCCTAAAGT 133
************************************************************
consensus_8116#0 CACCCACCCAGCTGCTGGTGCGGGTGAAAGCGGCCTCGGTCAACCCGATCGATGTGGCCA 419
consensus_8116#1 CACCCACCCAGCTGCTGGTGCGGGTGAAAGCGGC-TCGGTCAACCCGATCGATGTGGCCA 192
********************************** *************************
consensus_8116#0 TGATCAACGGATACGGTGCATCGGTGCTGAATGCGATGCGCTGCAAGGATGGCGGCATCG 479
consensus_8116#1 TGATCAACGGATACGGTGCATCGGTGCTGAATGCGATGCGCTGCAAGGATGGCGGCATCT 252
***********************************************************
consensus_8116#0 AGTTTCCGCTCGTGCTCGGGCGCGACTTTTGCGGCGAGATCGTCCAGAAGGGGCTGGGCA 539
consensus_8116#1 AGTTTCCGCTCGTGCTCGGGCGCGACTTTTGCGG-GAGATCGTCCAGAAGGGGCTGGGCA 311
********************************** *************************
consensus_8116#0 TTT-CGAGCCGCGAGCTCGAGGTAGGCGACGAGGTGTGGGGCGTCGTGCCGGTGCACTTG 598
consensus_8116#1 TTTTCGAGCCGCGAGCTCGAGGTAG-CGACGAGGTGTGGGGCGTCGTGCCGGTGCACTTG 370
*** ********************* **********************************
consensus_8116#0 CAAGGTTGCCATGCCGATTACG-TCGTGGTGG-AGAAGTACTGTCTGTTC-AAGAAACCT 655
consensus_8116#1 CAAGGTTGCCATGCCGATTACGGTCGTGGTGGCAGAAGTACTGTCTGTTCCAAGAAACCT 430
********************** ********* ***************** *********
consensus_8116#0 TCCAACCTGAGCAAAATAGACGCGAGTGCTATCCTGTACGCTGGTCTGACGGCCTGGTCG 715
consensus_8116#1 TCCAACTGAGCCAAAATAGACGCGAGCGCCATCCTGTACGCTGGTCTGACGGCCTGGTCG 490
****** *************** ** ******************************
consensus_8116#0 GGGCTTTACATTACCGGCCATCTAGGGGATTTGCTCGGTGCCATCTCGCCAGTCGGCGGT 775
consensus_8116#1 GGGCTGTACATTACCGGC-ATCTGGGGGATTTGCTCGGGGCCATCTCGCCGGTCGGCGGT 549
***** ************ **** ************** *********** *********
consensus_8116#0 GGCGCAGGGAA-GAAGGTGCTAGTGCTCGGGGCGGCCGGCGGC-GTCGGTAC-GCTCGCC 832
consensus_8116#1 GGCGCAGGGAACGAAGGTGCTCGTGCTCGGGGCGGCCGGCGGCCGTCGGTACCGCTCGCC 609
*********** ********* ********************* ******** *******
consensus_8116#0 GTCCAGATGCTGCTGGCTGAGGGGGTGGAAGTGTTCGCTACCTGCTCCCCGGACGCGATG 892
consensus_8116#1 GTCCAGATGCTGTGGGCCGAGG-------------------------------------- 631
************ *** ****
consensus_8116#0 CAGATGGTCAACAATCTCGGTGTAAAGTACGTGCTGGACTACACGGACCCGGCGCACGTG 952
consensus_8116#1 ------------------------------------------------------------
consensus_8116#0 CAGAACGTGGCCAGCGTTGGAAGGTTCGACATCGTGCTGGATTGTGCGGGGAAGGGCACG 1012
consensus_8116#1 ------------------------------------------------------------
consensus_8116#0 GAATACGCCAACGAGGTACCGTGGCTGTACGATCAGTACATTACGTTCAACTCGCCCGTA 1072
consensus_8116#1 ------------------------------------------------------------
consensus_8116#0 CTTAAAAACATTGACGCCGATGGTTCGCGGCCAGGATGTACCAAAATGCGCTCAATCTGG 1132
consensus_8116#1 ------------------------------------------------------------
consensus_8116#0 TGCGCAACAATGCGGCCGCCCTCAGCACCCGGCAGGGACTGGTGAAGTGGGGCTACTTTG 1192
consensus_8116#1 ------------------------------------------------------------
consensus_8116#0 TGCCGGCACCGCAAGGTATCGCCTACCTGCAGCGCCTGGCCGAGAAGGGCAAGCTGCTGC 1252
consensus_8116#1 ------------------------------------------------------------
consensus_8116#0 CGGTGGTGGAGAAAGTGTTCCCGTACGGCAGTACGCCCGAGGCGTACGAGCGTCGCGCAG 1312
consensus_8116#1 ------------------------------------------------------------
consensus_8116#0 AAGCATTTACGCGGGAAGGTTGTGATCGATTTCGAATAAGGCGAACAAGGAGCAGGTCTC 1372
consensus_8116#1 ------------------------------------------------------------
consensus_8116#0 GAAATGAAGGTGGATTTAGGTAAGATAGTGAAACGGTTAAAAGAGAAGAGATAAAGAAAC 1432
consensus_8116#1 ------------------------------------------------------------
consensus_8116#0 TAGCCAGAGAACAGGAGACATAGATAACGAATTATGTATTGTAGCGAATCGGACACATCA 1492
consensus_8116#1 ------------------------------------------------------------
consensus_8116#0 CGTGCTGCTGCTACGTGTGATTATATGGTAGAAATTAAAGTG 1534
consensus_8116#1 ------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||