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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8119#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 953 fasta sequence
[AGGCAGAATCGCGCACGAGGAGCACGAATCCCAGAAACAAAACATCATTCGTTTCTGGCACTGTTTGTTGTGTTAAATCGTTCATTTTCCGCTACAGCACAAACCCCTCCGTGAAACGTGAAAAGATGCCGTCGGAACTGAGTACGACCAAGGTGATCGTGCACCCGCTGGTGCTGCTCAGCGTGGTGGACCACTTCAACCGGATGGGCAAGATCGGCAACCAGAAGCGCGTTGTCGGTGTACTGCTTGGCTGCTGGCGTGCGAAAGGTGTTTTGGATGTGTCGAACAGCTTCGCAGTGCCGTTCGATGAGGATGACAAAGACAAATCGGTCTGGTTCCTGGACCACGACTATCTGGAGAACATGTACGGGATGTTTAAGAAGGTGAATGCCCGCGAGCGTGTCGTTGGCTGGTACCACACGGGGCCGAAGCTCTGCCAGAACGATATCGCCATCAACGAGCTGATCCGGCGCTACTGTCCCAACTCGGTGCTGGTCATCATTGACGCGAAGCCGAAAGACCTGGGCCTCCCGACGGAGGCGTACATTGCGGTGGAAGAGGTGCACGACGATGGTTCGCCCACGTCGAAAACGTTCGAGCACGTGCCGAGCGAAATCGGTGCCGAGGAGGCGG-AAGAGGTCGG-CGTGG-AGCA-TCTGCTGCGCGACATCAAAGGACACGAACGGTGGGCAGCTGGTCGCAGAAAGATCAACGGAACCAGTTTGGCTGGGGCTTGAACGGGCTGAATGCNCACACAGGGTTTTGGCGGCCGAAACATTTCNCAAGGGGCNACCTAAATCCTTCGCGTCTGNGAAAAGGGTTGGGGGGCCAAATTGGGGCCACAGTCTGGGGCCGAGATTTAAAACACACCACAGGAGATCCGGTGNGTGACCNCACGANGTCGGCAGGGGACACTATTTTTGGAAACCCCTGCTGTGACCGGAGAANATTTTGCG]
[+] EMBL BX467496 [AGGCAGAATCGCGCACGAGGAGCACGAATCCCAGAAACAAAACATCATTCGTTTCTGGCACTGTTTGTTGTGTTAAATCGTTCATTTTCCGCTACAGCACAAACCCCTCCGTGAAACGTGAAAAGATGCCGTCGGAACTGAGTACGACCAAGGTGATCGTGCACCCGCTGGTGCTGCTCAGCGTGGTGGACCACTTCAACCGGATGGGCAAGATCGGCAACCAGAAGCGCGTTGTCGGTGTACTGCTTGGCTGCTGGCGTGCGAAAGGTGTTTTGGATGTGTCGAACAGCTTCGCAGTGCCGTTCGATGAGGATGACAAAGACAAATCGGTCTGGTTCCTGGACCACGACTATCTGGAGAACATGTACGGGATGTTTAAGAAGGTGAATGCCCGCGAGCGTGTCGTTGGCTGGTACCACACGGGGCCGAAGCTCTGCCAGAACGATATCGCCATCAACGAGCTGATCCGGCGCTACTGTCCCAACTCGGTGCTGGTCATCATTGACGCGAAGCCGAAAGACCTGGGCCTCCCGACGGAGGCGTACATTGCGGTGGAAGAGGTGCACGACGATGGTTCGCCCACGTCGAAAACGTTCGAGCACGTGCCGAGCGAAATCGGTGCCGAGGAGGCGG AAGAGGTCGGCCGTGGAAGCATTCTGCTGCGCGACATCAAAGGACACGAACGGTGGGCAGCTGGTCGCAGAAAGATCAACGGAACCAGTTTGGCTGGGGCTTGAACGGGCTGAATGCNCACACAGGGTTTTGGCGGCCGAAACATTTCNCAAGGGGCNACCTAAATCCTTCGCGTCTGNGAAAAGGGTTGGGGGGCCAAATTGGGGCCACAGTCTGGGGCCGAGATTTAAAACACACCACAGGAGATCCGGTGNGTGACCNCACGANGTCGGCAGGGGACACTATTTTTGGAAACCCCTGCTGTGACCGGAGAANATTTTGCG]
[+] EMBL BM581244 [ ccgCCAGAAACAAAA ATCATTCGTTTCTGGCACTGTTTGTTGTGTTAAATCGTTCATTTTCCGCTACAGCACAAACCCCTCCGTGAAACGTGAAAAGATGCCGTCGGAACTGAGTACGACCAAGGTGATCGTGCACCCGCTGGTGCTGCTCAGCGTGGTGGACCACTTCAACCGGATGGGCAAGATCGGCAACCAGAAGCGCGTTGTCGGTGTACTGCTTGGCTGCTGGCGTGCGAAAGGTGTTTTGGATGTGTCGAACAGCTTCGCAGTGCCGTTCGATGAGGATGACAAAGACAAATCGGTCTGGTTCCTGGACCACGACTATCTGGAGAACATGTACGGGATGTTTAAGAAGGTGAATGCCCGCGAGCGTGTCGTTGGCTGGTACCACACGGGGCCGAAGCTCTGCCAGAACGATATCGCCATCAACGAGCTGATCCGGCGCTACTGTCCCAACTCGGTGCTGGTCATCATTGACGCGAAGCCGAAAGACCTGGGCCTCCCGACGGAGGCGTACATTGCGGTGGAAGAGGTGCACGACGATGGTTCGCCCACGTCGAAAACGTTCGAGCACGTGCCGAGCGAAATCGGTGCCGAGGAAGCGGAAAAAGGTCGG CGTGG AGCA TCTGCTGCGCGACATCAAGGGA ]
[+] EMBL BM579467 [ ccgGTGTTAAATCGTTCATTTTCCGCTACAGCACAAACCCCTCC CGAAACGTGAAAAGATGCCGTCGGAACTGAGTACGACCAAGGTGATCGTGCACCCGCTGGTGCTGCTCAGCGTGGTGGACCACTTCAACCGGATGGGCAAGATCGGCAACCAGAAGCGCGTTGTCGGTGTACTGCTTGGCTGCTGGCGTGCGAAAGGTGTTTTGGATGTGTCGAACAGCTTCGCAGTGCCGTTCGATGAGGATGACAAAGACAAATCGGTCTGGTTCCTGGACCACGACTATCTGGAGAACATGTACGGTATGTTTAAGAAGGTGAATGCCCGCGAGCGTGTCGTCGGCTGGTACCACACGGGGCCGAAGCTCTGCCAGAACGACATCGCTATCAACGAGCTGATTCGGCGCTACTGTCCCAACTCGGTGCTGGTCATCATTGACGCGAAGCCGAAAGACCTGGGCCTCCCGACGGAGGCGTACATTGCGGTGGAGGAGGTGCACGACGATGGTTCGCCCACGTCGAAAACGTTCGAGCACGTGCCGAGCGAAATCGGTGCCGAGGAGGCGG AAGAAGTCGG CGTGG AGCA TCTGCTGCGCGACATC AAGGACACG ACGGTGGGCAGCCTGTCGCAG AAGATC AC GAACCAGCT GTTGGGGC TGAAAGGGCTGAATGCACAgctg ]
consensusID : consensus_8119#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 637 fasta sequence
[CCGCTTGTTTTGTCATTGCGAAGAGCCACCGAATCCCAGAAACAAAAATCATTCGTTTCTGGCCCTGTTTATTGTGTTAAATCGTTCATTTTCCGCTACAGCACAAACCCCTCC-CGAAACGTGAAAAGATGCCGTCGGAACTGAGTACGACCAAGGTGATCGTGCACCCGCTGGTGCTGCTCAGCGTGGTGGACCACTTCAACCGGATGGGCAAGATCGGCAACCAG-AAGCGCGTTGTCGGTGTACTGCTTGGCTGCTGGCGTGCGAAAGGTGTTTTGGATGTGTCGAACAGCTTCGCAGTGCCGTTCGATGAGGATGACAAAGACAAATCGGTCTGGTTCCTGGACCACGACTATCTGGAGAACATGTACGGTATGTTTAAGAAGGTGAATGCCCGCGAGCGTGTCGTCGGCTGGTACCACACGGGGCCGAAGCTCTGCCAGAACGACATCGCTATCAACGAGCTGATTCGGCGCTACTGTCCCAACTCGGTGCTGGTCATCATTGACGCGAAGCCGAAAGACCTGGGCCTCCCGACGGAGGCGTACATTGCGGTGGAGGAGGTGCACGACGATGGTTCGCCCACGTCGAAAACGTTCGAGCACGTGCCGAGCGAAATCGGTGCCGAGGAGGCGGA]
[+] EMBL BM620906 [CCGCTTGTTTTGTCATTGCGAAGAGCCACCGAATCCCAGAAACAAAAATCATTCGTTTCTGGCCCTGTTTATTGTGTTAAATCGTTCATTTTCCGCTACAGCACAAACCCCTCC CGAAACGTGAAAAGATGCCGTCGGAACTGAGTACGACCAAGGTGATCGTGCACCCGCTGGTGCTGCTCAGCGTGGTGGACCACTTCAACCGGATGGGCAAGATCGGCAACCAG AAGCGCGTTGTCGGTGTACTGCTTGGCTGCTGGCGTGCGAAAGGTGTTTTGGATGTGTCGAACAGCTTCGCAGTGCCGTTCGATGAGGATGACAAAGACAAATCGGTCTGGTTCCTGGACCACGACTATCTGGAGAACATGTACGGTATGTTTAAGAAGGTGAATGCCCGCGAGCGTGTCGTCGGCTGGTACCACACGGGGCCGAAGCTCTGCCAGAACGACATCGCTATCAACGAGCTGATTCGGCGCTACTGTCCCAACTCGGTGCTGGTCATCATTGACGCGAAGCCGAAAGACCTGGGCCTCCCGACGGAGGCGTACATTGCGGTGGAGGAGGTGCACGACGATGGTTCGCCCACGTCGAAAACGTTCGAGCACGTGCCGAGCG ]
[+] EMBL BX601885 [ TCATTGCGAAGAGCCACCGAATCCCAGAAACAAAAATCATTCGTTTCTGGCCCTGTTTATTGTGTTAAATCGTTCATTTTCCGCTACAGCACAAACCCCTCC CGAAACGTGAAAAGATGCCGTCGGAACTGAGTACGACCAAGGTGATCGTGCACCCGCTGGTGCTGCTCAGCGTGGTGGACCACTTCAACCGGATGGGCAAGATCGGCAACCAG AAGCGCGTTGTCGGTGTACTGCTTGGCTGCTGGCGTGCGAAAGGTGTTTTGGATGTGTCGAACAGCTTCGCAGTGCCGTTCGATGAGGATGACAAAGACAAATCGGTCTGGTTCCTGGACCACGACTATCTGGAGAACATGTACGGTATGTTTAAGAAGGTGAATGCCCGCGAGCGTGTCGTCGGCTGGTACCACACGGGGCCGAAGCTCTGCCAGAACGACATCGCTATCAACGAGCTGATTCGGCGCTACTGTCCCAACTCGGTGCTGGTCATCATTGACGCGAAGCCGAAAGACCTGGGCCTCCCGACGGA ]
[+] EMBL BX606436 [ ATTGCGAAGAGCCACCGAATCCCAGAAACAAAAATCATTCGTTTCTGGCACTGTTTGTTGTGTTAAATCGTTCATTTTCCGCTACAGCACAAACCCCTCCGTGAAACGTGAAAAGATGCCGTCGGAACTGAGTACGACCAAGGTGATCGTGCACCCGCTGGTGCTGCTCAGCGTGGTGGACCACTTCAACCGGATGGGCAAGATCGGCAACCAGAAAGCGCGTTGTCGGTGTACTGCTTGGCTGCTGGCGTGCGAAAGGTGTTTTGGATGTGTCGAACAGCTTCGCAGTGCCGTTCGATGAGGATGACAAAGACAAATCGGTCTGGTTCCTGGACCACGACTATCTGGAGAA ]
[+] EMBL BM582349 [ ccgGAGCCACCGAATCCCAGAAACAAAAATCATTCGTTTCTGGCCCTGTTTATTGTGTTAAATCGTTCATTTTCCGCTACAGCACAAACCCCTCC CGAAACGTGAAAAGATGCCGTCGGAACTGAGTACGACCAAGGTGATCGTGCACCCGCTGGTGCTGCTCAGCGTGGTGGACCACTTCAACCGGATGGGCAAGATCGGCAACCAG AAGCGCGTTGTCGGTGTACTGCTTGGCTGCTGGCGTGCGAAAGGTGTTTTGGATGTGTCGAACAGCTTCGCAGTGCCGTTCGATGAGGATGACAAAGACAAATCGGTCTGGTTCCTGGACCACGACTATCTGGAGAACATGTACGGTATGTTTAAGAAGGTGAATGCCCGCGAGCGTGTCGTCGGCTGGTACCACACGGGGCCGAAGCTCTGCCAGAACGACATCGCTATCAACGAGCTGATTCGGCGCTACTGTCCCAACTCGGTGCTGGTCATCATTGACGCGAAGCCGAAAGACCTGGGCCTCC ]
[+] EMBL BX611646 [ ACCGAATCCCAGAAACAAAAATCATTCGTTTCTGGCCCTGTTTATTGTGTTAAATCGTTCATTTTCCGCTACAGCACAAACCCCTCC CGAAACGTGAAAAGATGCCGTCGGAACTGAGTACGACCAAGGTGATCGTGCACCCGCTGGTGCTGCTCAGCGTGGTGGACCACTTCAACCGGATGGGCAAGATCGGCAACCAG AAGCGCGTTGTCGGTGTACTGCTTGGCTGCTGGCGTGCGAAAGGTGTTTTGGATGTGTCGAACAGCTTCGCAGTGCCGTTCGATGAGGATGACAAAGACAAATCGGTCTGGTTCCTGGACCACGACTATCTGGAGAACATGTACGGTATGTTTAAGAAGGTGAATGCCCGCGAGCGTGTCGTCGGCTGGTACCACACGGGGCCGAAGCTCTGCCAGAACGACATCGCTATCAACGAGCTGATTCGGCGCTACTGTCCCAACTCGGTGCTGGTCATCATTGACGCGAAGCCGAAAGACCTGGGCCTCCCGACGGAGGCGTACATTGCGGTGGAGGAGGTGCACGACGATGGTTCGCCCACGTCGAAAACGTTCGAGCACGTGCCGAGCGAAATCGGTGCCGAGGAGGCGGA]
consensusID : consensus_8119#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 498 fasta sequence
[TCGAGCAGATCGCAGAGGTTAAAAACAAAAATCATTCGTTTCTGGCACTGTTTGTTGTGTTAAATCGTTCATTTTCCGCTACAGCACAAACCCCTCCGTGAAACGTGAAAAGATGCCGTCGGAACTGAGTACGACCAAGGTGATCGTGCACCCGCTGGTGCTGCTCAGCGTGGTGGACCACTTCAACCGGATGGGCAAGATCGGCAACCAGAAGCGCGTTGTCGGTGTACTGNTTGGCTGCTGGCGTGCCGAAAGGTGTACTTGGATGTGTCGAACAGCTTCGCAGTGCCGTTCGATGCAGGATGACCAAAGACAAATCGGTCTGGTTTCCTGGACCCACGACTATCTGGCAGAACCATGTACCGCGACGACTCGTCTTCAACAGGAACGCGTCGACACTTGCCCGGCGCAGCGTGTCGTATGGCTGGTACCAGCACGGAGNGCCGAAGCTCTGCCAGAACGATATCGCATCAACGAGCTGATCCGGCGCTACTGTCC]
[+] EMBL AL696820 [TCGAGCAGATCGCAGAGGTTAAAAACAAAAATCATTCGTTTCTGGCACTGTTTGTTGTGTTAAATCGTTCATTTTCCGCTACAGCACAAACCCCTCCGTGAAACGTGAAAAGATGCCGTCGGAACTGAGTACGACCAAGGTGATCGTGCACCCGCTGGTGCTGCTCAGCGTGGTGGACCACTTCAACCGGATGGGCAAGATCGGCAACCAGAAGCGCGTTGTCGGTGTACTGNTTGGCTGCTGGCGTGCCGAAAGGTGTACTTGGATGTGTCGAACAGCTTCGCAGTGCCGTTCGATGCAGGATGACCAAAGACAAATCGGTCTGGTTTCCTGGACCCACGACTATCTGGCAGAACCATGTACCGCGACGACTCGTCTTCAACAGGAACGCGTCGACACTTGCCCGGCGCAGCGTGTCGTATGGCTGGTACCAGCACGGAGNGCCGAAGCTCTGCCAGAACGATATCGCATCAACGAGCTGATCCGGCGCTACTGTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8119#0 -AGGCAGAATCGCG--CACGAGGAGCA--CGAATCCCAGAAACAAAACATCATTCGTTTC 55
consensus_8119#1 CCGCTTGTTTTGTCATTGCGAAGAGCCACCGAATCCCAGAAACAAAA-ATCATTCGTTTC 59
consensus_8119#2 -----------------TCGAGCAGATCGCAGAGGTTAAAAACAAAA-ATCATTCGTTTC 42
*** ** * * * ******** ************
consensus_8119#0 TGGCACTGTTTGTTGTGTTAAATCGTTCATTTTCCGCTACAGCACAAACCCCTCCGTGAA 115
consensus_8119#1 TGGCCCTGTTTATTGTGTTAAATCGTTCATTTTCCGCTACAGCACAAACCCCTCC-CGAA 118
consensus_8119#2 TGGCACTGTTTGTTGTGTTAAATCGTTCATTTTCCGCTACAGCACAAACCCCTCCGTGAA 102
**** ****** ******************************************* ***
consensus_8119#0 ACGTGAAAAGATGCCGTCGGAACTGAGTACGACCAAGGTGATCGTGCACCCGCTGGTGCT 175
consensus_8119#1 ACGTGAAAAGATGCCGTCGGAACTGAGTACGACCAAGGTGATCGTGCACCCGCTGGTGCT 178
consensus_8119#2 ACGTGAAAAGATGCCGTCGGAACTGAGTACGACCAAGGTGATCGTGCACCCGCTGGTGCT 162
************************************************************
consensus_8119#0 GCTCAGCGTGGTGGACCACTTCAACCGGATGGGCAAGATCGGCAACCAGAAGCGCGTTGT 235
consensus_8119#1 GCTCAGCGTGGTGGACCACTTCAACCGGATGGGCAAGATCGGCAACCAGAAGCGCGTTGT 238
consensus_8119#2 GCTCAGCGTGGTGGACCACTTCAACCGGATGGGCAAGATCGGCAACCAGAAGCGCGTTGT 222
************************************************************
consensus_8119#0 CGGTGTACTGCTTGGCTGCTGGCGTGC-GAAAGGTGT-TTTGGATGTGTCGAACAGCTTC 293
consensus_8119#1 CGGTGTACTGCTTGGCTGCTGGCGTGC-GAAAGGTGT-TTTGGATGTGTCGAACAGCTTC 296
consensus_8119#2 CGGTGTACTGNTTGGCTGCTGGCGTGCCGAAAGGTGTACTTGGATGTGTCGAACAGCTTC 282
********** **************** ********* *********************
consensus_8119#0 GCAGTGCCGTTCGATG-AGGATGAC-AAAGACAAATCGGTCTGGTT-CCTGGACC-ACGA 349
consensus_8119#1 GCAGTGCCGTTCGATG-AGGATGAC-AAAGACAAATCGGTCTGGTT-CCTGGACC-ACGA 352
consensus_8119#2 GCAGTGCCGTTCGATGCAGGATGACCAAAGACAAATCGGTCTGGTTTCCTGGACCCACGA 342
**************** ******** ******************** ******** ****
consensus_8119#0 CTATCTGG-AGAAC-ATGTACGGGA--------TGTTTAAGAAG-----GTGAATGCCCG 394
consensus_8119#1 CTATCTGG-AGAAC-ATGTACGGTA--------TGTTTAAGAAG-----GTGAATGCCCG 397
consensus_8119#2 CTATCTGGCAGAACCATGTACCGCGACGACTCGTCTTCAACAGGAACGCGTCGACACTTG 402
******** ***** ****** * * ** ** * * ** * * *
consensus_8119#0 CG------AGCGTGTCGT-TGGCTGGTACCA-CACGG--GGCCGAAGCTCTGCCAGAACG 444
consensus_8119#1 CG------AGCGTGTCGT-CGGCTGGTACCA-CACGG--GGCCGAAGCTCTGCCAGAACG 447
consensus_8119#2 CCCGGCGCAGCGTGTCGTATGGCTGGTACCAGCACGGAGNGCCGAAGCTCTGCCAGAACG 462
* ********** *********** ***** ********************
consensus_8119#0 ATATCGCCATCAACGAGCTGATCCGGCGCTACTGTCCCAACTCGGTGCTGGTCATCATTG 504
consensus_8119#1 ACATCGCTATCAACGAGCTGATTCGGCGCTACTGTCCCAACTCGGTGCTGGTCATCATTG 507
consensus_8119#2 ATATCGC-ATCAACGAGCTGATCCGGCGCTACTGTCC----------------------- 498
* ***** ************** **************
consensus_8119#0 ACGCGAAGCCGAAAGACCTGGGCCTCCCGACGGAGGCGTACATTGCGGTGGAAGAGGTGC 564
consensus_8119#1 ACGCGAAGCCGAAAGACCTGGGCCTCCCGACGGAGGCGTACATTGCGGTGGAGGAGGTGC 567
consensus_8119#2 ------------------------------------------------------------
consensus_8119#0 ACGACGATGGTTCGCCCACGTCGAAAACGTTCGAGCACGTGCCGAGCGAAATCGGTGCCG 624
consensus_8119#1 ACGACGATGGTTCGCCCACGTCGAAAACGTTCGAGCACGTGCCGAGCGAAATCGGTGCCG 627
consensus_8119#2 ------------------------------------------------------------
consensus_8119#0 AGGAGGCGGAAGAGGTCGGCGTGGAGCATCTGCTGCGCGACATCAAAGGACACGAACGGT 684
consensus_8119#1 AGGAGGCGGA-------------------------------------------------- 637
consensus_8119#2 ------------------------------------------------------------
consensus_8119#0 GGGCAGCTGGTCGCAGAAAGATCAACGGAACCAGTTTGGCTGGGGCTTGAACGGGCTGAA 744
consensus_8119#1 ------------------------------------------------------------
consensus_8119#2 ------------------------------------------------------------
consensus_8119#0 TGCNCACACAGGGTTTTGGCGGCCGAAACATTTCNCAAGGGGCNACCTAAATCCTTCGCG 804
consensus_8119#1 ------------------------------------------------------------
consensus_8119#2 ------------------------------------------------------------
consensus_8119#0 TCTGNGAAAAGGGTTGGGGGGCCAAATTGGGGCCACAGTCTGGGGCCGAGATTTAAAACA 864
consensus_8119#1 ------------------------------------------------------------
consensus_8119#2 ------------------------------------------------------------
consensus_8119#0 CACCACAGGAGATCCGGTGNGTGACCNCACGANGTCGGCAGGGGACACTATTTTTGGAAA 924
consensus_8119#1 ------------------------------------------------------------
consensus_8119#2 ------------------------------------------------------------
consensus_8119#0 CCCCTGCTGTGACCGGAGAANATTTTGCG 953
consensus_8119#1 -----------------------------
consensus_8119#2 -----------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||