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Anopheles gambiae
cluster # 8124 cluster # 8124       Sequences # 9       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8124#0 length = 1095 sequences # 4  
consensus_8124#1 length = 950 sequences # 1  
consensus_8124#2 length = 870 sequences # 2  
consensus_8124#3 length = 527 sequences # 1  
consensus_8124#4 length = 337 sequences # 1  

consensusID : consensus_8124#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1095
fasta sequence
                              [CAACCGGGCAACGAGCTAGGACATTCCCAAACTGTGTCTATCTCTCCTTTTACCCTTAAGTGTCACACGTCGATGGTCGATTAATGAGGTAACGCGTGCGCAATTGTAAAGTTCTCACTGTTCTCACTGTAAAAAGGATTTAGGCCTATCCAACCATTTTTTATCCTCTCTCTCTCTATCTCAGCCTAGCTACCTAAAACGCCAACTAGGCGACTCCTTCTGACTGCGTAAATAAAGTAATTTGATAAATCGACTTCTCCTCGTTCCTGTCTTCTATACAGTAAAGCGCTCAACGACCC-TTTTTTAAAGATTTAATGTAACTAAAAACGAGTGTCTCTTTTCTCCGTTGTTGCACTGTACAC--------GTGTCCCTCGATCGCCGCATACGTCTCCACTATTCATGCCTCCCCCCCTTCGCTCGCTTCGCGTACGCCCCACACGCACACTTCTCATTCTCGCTCATATGTGCTCGCACACCTTGCTCTAGGATGGTGGAGTAGTACTACACCGCACACAGCAGACCACACTGTCGCCAACGCCGCCGCCGCCGCCAAGGGTAGTAGTTCGCAACGCGGATCGCAATGTAGCACCATCATCATCATCTTCCTTCGCTTACGCCAGGCCGCCGCCGGACGAGGCGGTAGTGGTGAAACTGCTTGCAAGTAATGCTTCTGCCGATGGTGCTACTACTGTTCCAGCTGTCGATGCTGCTGATGGAGTGGTCATCCCCCCGGCGTCTTCTACTCACGCTTGTCAGCTCGATCTTGCAGGTGCCGCCGCAGCCGGAGCAGAGCAGCCCGGAAGGGACGGAGAGCCGCCTCTAAAGCCGAAGCCCTCGCTGCGCCTCAAGTACCGGAAGCAGGCGCCGATCTATCTCGGCCCCGACCGGCGCCAGTACGCCAACCCGATCAGCTACCTCGGTGGACCGCGGTACGATCTTGCCAAGCGCAGCTCGGTCGCTTCTAGTCAGGGCGATAGCGTTACTAGCCTCAATTCGATCCTGTCCTTAGATTAGTGGTAGCGCTCATTACAATGGGCCAATGACGCGGGCGGTGGCGCCCTCCGTCTTCTACGCCCAAAGTTAGTCGTGAAAATGAG]

[+] EMBL BX620742             [CAACCGGGCAACGAGCTAGGACATTCCCAAACTGTGTCTATCTCTCCTTTTACCCTTAAGTGTCACACGTCGATGGTCGATTAATGAGGTAACGCGTGCGCAATTGTAAAGTTCTCACTGTTCTCACTGTAAAAAGGATTTAGGCCTATCCAACCATTTTTTATCCTCTCTCTCTCTATCTCAGCCTAGCTACCTAAAACGCCAACTAGGCGACTCCTTCTGACTGCGTAAATAAAGTAATTTGATAAATCGACTTCTCCTCGTTCCTGTCTTCTATACAGTAAAGCGCTCAACGACCC TTTTTTAAAGATTTAATGTAACTAAAAACGAGTGTCTCTTTTCTCCGTTGTTGCACTGTACAC        GTGTCCCTCGATCGCCGCATACGTCTCCACTATTCATGCCTCCCCCCCTTCGCTCGCTTCGCGTACGCCACACACGCACACTTCTCATTCTCGCTCATATGTGCTCGCACACCTTGCTCTAGGATGGTGGAGTAGTACTACACCGCACACAGCAGACCACACTGTCGCCAACGCCACCGCTGCCGCCAAGGGTAGTAGTCCGCAACCCGGATCGCAATGTAGCACCATCATCATTATCTTCCTTCGCTTACGCCGGGCCGCCGCCGGACGAGGCGGTAGTGGTGAAACTGCTTGCAAGTAATGCTTCTGCCGNTGGTGCTACTACTGTTCCAGCTGTCGATGCTGCTGATGGAGTGGTCATCCCCCCGGCGTCTTCTACTCACGCTGGTCAGCTCGATCTTGCA                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BX623255             [                                                                                                                                                                                                                                                             CTTCTCCCCGTTCCTGTCTTCTCTACAGTAAAGCACTCTACGACCCTTTTTTTAAAGATTCAATGTAACTAAAAACGAGTGTCCCTTTTCTCCGTTGTTGCACTGTACACGGTGTAGTGTGTCCCTCAATCGCCGCATACGTCTCCACTATTCATGCCT TCCCCCTTCGCTCGCTTCGCGTACGCCCCACACGCACACTTCTCATTCTCGCTCATATGTGCTCGCACACCTTGCTCTAGGATGGTGGAGTAGTACTACACCGCACACAGCAGACCACACTGTCGCCAACGCCGCCGCCGCCGCCAAGGGTAGTAGTTCGCAACGCGGATCGCAATGTAGCACCATCATCATCATCTTCCTTCGCTTACGCCAGGCCGCCGCCGGACGAGGCGGTAGTGGTGAAACTGCTTGCAAGTAATGCTTCTGCCGATGGTGCTACTACTGTTCCAGCTGTCGATGCTGCTGATGGAGTGGTCATCCCCCCGGCGTCTTCTACTCACGCTTGTCAGCTCGATCTTGCANGTGCCGCCGCAGCCGGAGCAGAGCAGCCCGGAAGGGACGGAGAGCCGCCTCTAAAGCCGAAGCCCTCGCTGCGCCTCAAGTACCGGAAGCAGGCGCCGATCTATCTCGGNCCCGACCGGCGCCAGTACGCCAACCCGATCAGCTACCTCGGGGGA CGCGGTACGATCTT                                                                                                                                                              ]
[+] EMBL BX616946             [                                                                                                                                                                                                                                                                                                                                                                                                                                     CGCTCGCTTCGCGTACGCCCCACACGCACACTTCTCATTCTCGCTCATATGTGCTCGCACACCTTGCTCTAGGATGGTGGAGTAGTACTACACCGCACACAGCAGACCACACTGTCGCCAACGCCGCCGCCGCCGCCAAGGGTAGTAGTTCGCAACGCGGATCGCAATGTAGCACCATCATCATCATCTTCCTTCGCTTACGCCAGGCCGCCGCCGGACGAGGCGGTAGTGGTGAAACTGCTTGCAAGTAATGCTTCTGCCGATGGTGCTACTACTGTTCCAGCTGTCGATGCTGCTGATGGAGTGGTCATCCCCCCGGCGTCTTCTACTCACGCTTGTCAGCTCGATCTTGCAGGTGCCGCCGCAGCCGGAGCAGAGCAGCCCGGAAGGGACGGAGAGCCGCCTCTAAAGCCGAAGCCCTCGCTGCGCCTCAAGTACCGGAAGCAGGCGCCGATCTATCTCGGCCCCGACCGGCGCCAGTACGCCAACCCGATCAGCTACCTCGGTGGACCGCGGTACGATCTTGCCAAGCGCAGCTCGGTCGCTTCTAGTCAGGGCGATAGCGTTACTAGCCTCAATTCGATCCTGTCCTTAGATTAGTGGTAGCGCTCATTACAATGGGCCAATGACGCGGGCGGTGGCGCCCTCCGTCTTCTACGCCCAAAGTTAGTCGT         ]
[+] EMBL BX618898             [                                                                                                                                                                                                                                                                                                                                                                                                                                                         CACACGCACACTTCTCATTCTCGCTCATATGTGCTCGCACACCTTGCTCTAGGATGGTGGAGTAGTACTACACCGCACACAGCAGACCACACTGTCGCCAACGCCGCCGCCGCCGCCAAGGGTAGTAGTTCGCAACGCGGATCGCAATGTAGCACCATCATCATCATCTTCCTTCGCTTACGCCAGGCCGCCGCCGGACGAGGCGGTAGTGGTGAAACTGCTTGCAAGTAATGCTTCTGCCGATGGTGCTACTACTGTTCCAGCTGTCGATGCTGCTGATGGAGTGGTCATCCCCCCGGCGTCTTCTACTCACGCTTGTCAGCTCGATCTTGCAGGTGCCGCCGCAGCCGGAGCAGAGCAGCCCGGAAGGGACGGAGAGCCGCCTCTAAAGCCGAAGCCCTCGCTGCGCCTCAAGTACCGGAAGCAGGCGCCGATCTATCTCGGCCCCGACCGGCGCCAGTACGCCAACCCGATCAGCTACCTCGGTGGACCGCGGTACGATCTTGCCAAGCGCAGCTCGGTCGCTTCTAGTCAGGGCGATAGCGTTACTAGCCTCAATTCGATCCTGTCCTTAGATTAGTGGTAGCGCTCATGACAATGGGCCAATGACGCGGGCGGTGGCGCCCTCCGTCTTCTACGCCAAAAGTTAGTCGTGAAAATGAG]


>consensus_8124#0 CAACCGGGCAACGAGCTAGGACATTCCCAAACTGTGTCTATCTCTCCTTTTACCCTTAAG TGTCACACGTCGATGGTCGATTAATGAGGTAACGCGTGCGCAATTGTAAAGTTCTCACTG TTCTCACTGTAAAAAGGATTTAGGCCTATCCAACCATTTTTTATCCTCTCTCTCTCTATC TCAGCCTAGCTACCTAAAACGCCAACTAGGCGACTCCTTCTGACTGCGTAAATAAAGTAA TTTGATAAATCGACTTCTCCTCGTTCCTGTCTTCTATACAGTAAAGCGCTCAACGACCCT TTTTTAAAGATTTAATGTAACTAAAAACGAGTGTCTCTTTTCTCCGTTGTTGCACTGTAC ACGTGTCCCTCGATCGCCGCATACGTCTCCACTATTCATGCCTCCCCCCCTTCGCTCGCT TCGCGTACGCCCCACACGCACACTTCTCATTCTCGCTCATATGTGCTCGCACACCTTGCT CTAGGATGGTGGAGTAGTACTACACCGCACACAGCAGACCACACTGTCGCCAACGCCGCC GCCGCCGCCAAGGGTAGTAGTTCGCAACGCGGATCGCAATGTAGCACCATCATCATCATC TTCCTTCGCTTACGCCAGGCCGCCGCCGGACGAGGCGGTAGTGGTGAAACTGCTTGCAAG TAATGCTTCTGCCGATGGTGCTACTACTGTTCCAGCTGTCGATGCTGCTGATGGAGTGGT CATCCCCCCGGCGTCTTCTACTCACGCTTGTCAGCTCGATCTTGCAGGTGCCGCCGCAGC CGGAGCAGAGCAGCCCGGAAGGGACGGAGAGCCGCCTCTAAAGCCGAAGCCCTCGCTGCG CCTCAAGTACCGGAAGCAGGCGCCGATCTATCTCGGCCCCGACCGGCGCCAGTACGCCAA CCCGATCAGCTACCTCGGTGGACCGCGGTACGATCTTGCCAAGCGCAGCTCGGTCGCTTC TAGTCAGGGCGATAGCGTTACTAGCCTCAATTCGATCCTGTCCTTAGATTAGTGGTAGCG CTCATTACAATGGGCCAATGACGCGGGCGGTGGCGCCCTCCGTCTTCTACGCCCAAAGTT AGTCGTGAAAATGAG



consensusID : consensus_8124#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 950
fasta sequence
                              [GCAGAATCGCGCACGAGGACGACCGATCCGCGCTTTGCCGTGTACAAAAGCTACGACGGTTGCCTGTCGAATATCTTCATCCAGGTCAATAATGAAACGATGAAACCGCTGGAGGAGTACATGCTGTTCACGAAGAGCGAGGCGGAAACCATTACCGTGATCAACTCGCAGGGCGTACGGTCGGCCCAGTGCAAGCAGTTCGATGTCATCCAGAAGCTGACGCCCTTCAACGAGCCGGCACTCAACATGACTTCGGTTATCGACAAGAACTGGGTGGTCGATGCACCGACGCGCCTACCGTACAAAGCGGTCTACTTTGATCCGTCGACCAAGGAGGAAAAAACGCAGGTCGTGTTCATCACGCTCACCGCCATCTTCGTCATCATCGTGGTGTGCTGCCTGATCGAGGTGTACCGGTCGGACCGGGAGTACCGCAAGCGCATCGAGCGCCAGACGGACGAGGACATCATCTGGAGCAAGGAGCAGGCGGCAAAATGCAGATCGAAACGTCCACCACGAACGTGAAGGGATTTTCGTACAAATCGATCCCGAGCGATGAGAAGAAGGACAATGGAGCGAAACCGTTGGTGGGCATACTGAAGAATGGCAGCGTGACGGCGGCGTCGGAAAAGCCACCAACACCAAGTAGCAACAGTAGCCGCAGCCCCGGTTGGGAAAGTCTACGCAAAGCAACAGGGTACAGCCGAAAANCTGGGTGGCATTCGTGGACAGGCCAAACTGGTTCGAACACGAAGCTTGCAGTGGGAATCCGNNTTTGGCAGACCGGGGAAAGAAGAAACCGAAAGGGGCTTCCTTGGAAGGTTCCGGACACGGGATTTCNTTACGGGGGCACACAGAAACGNCNTTTACGGCGAAAANGGCAAACGGGGGTTGGACGGTCCCANNTTGCCCCGTTTCGGCCAACGGGTGATTCCAAGCATCGACGACGG]

[+] EMBL BX467436             [GCAGAATCGCGCACGAGGACGACCGATCCGCGCTTTGCCGTGTACAAAAGCTACGACGGTTGCCTGTCGAATATCTTCATCCAGGTCAATAATGAAACGATGAAACCGCTGGAGGAGTACATGCTGTTCACGAAGAGCGAGGCGGAAACCATTACCGTGATCAACTCGCAGGGCGTACGGTCGGCCCAGTGCAAGCAGTTCGATGTCATCCAGAAGCTGACGCCCTTCAACGAGCCGGCACTCAACATGACTTCGGTTATCGACAAGAACTGGGTGGTCGATGCACCGACGCGCCTACCGTACAAAGCGGTCTACTTTGATCCGTCGACCAAGGAGGAAAAAACGCAGGTCGTGTTCATCACGCTCACCGCCATCTTCGTCATCATCGTGGTGTGCTGCCTGATCGAGGTGTACCGGTCGGACCGGGAGTACCGCAAGCGCATCGAGCGCCAGACGGACGAGGACATCATCTGGAGCAAGGAGCAGGCGGCAAAATGCAGATCGAAACGTCCACCACGAACGTGAAGGGATTTTCGTACAAATCGATCCCGAGCGATGAGAAGAAGGACAATGGAGCGAAACCGTTGGTGGGCATACTGAAGAATGGCAGCGTGACGGCGGCGTCGGAAAAGCCACCAACACCAAGTAGCAACAGTAGCCGCAGCCCCGGTTGGGAAAGTCTACGCAAAGCAACAGGGTACAGCCGAAAANCTGGGTGGCATTCGTGGACAGGCCAAACTGGTTCGAACACGAAGCTTGCAGTGGGAATCCGNNTTTGGCAGACCGGGGAAAGAAGAAACCGAAAGGGGCTTCCTTGGAAGGTTCCGGACACGGGATTTCNTTACGGGGGCACACAGAAACGNCNTTTACGGCGAAAANGGCAAACGGGGGTTGGACGGTCCCANNTTGCCCCGTTTCGGCCAACGGGTGATTCCAAGCATCGACGACGG]


>consensus_8124#1 GCAGAATCGCGCACGAGGACGACCGATCCGCGCTTTGCCGTGTACAAAAGCTACGACGGT TGCCTGTCGAATATCTTCATCCAGGTCAATAATGAAACGATGAAACCGCTGGAGGAGTAC ATGCTGTTCACGAAGAGCGAGGCGGAAACCATTACCGTGATCAACTCGCAGGGCGTACGG TCGGCCCAGTGCAAGCAGTTCGATGTCATCCAGAAGCTGACGCCCTTCAACGAGCCGGCA CTCAACATGACTTCGGTTATCGACAAGAACTGGGTGGTCGATGCACCGACGCGCCTACCG TACAAAGCGGTCTACTTTGATCCGTCGACCAAGGAGGAAAAAACGCAGGTCGTGTTCATC ACGCTCACCGCCATCTTCGTCATCATCGTGGTGTGCTGCCTGATCGAGGTGTACCGGTCG GACCGGGAGTACCGCAAGCGCATCGAGCGCCAGACGGACGAGGACATCATCTGGAGCAAG GAGCAGGCGGCAAAATGCAGATCGAAACGTCCACCACGAACGTGAAGGGATTTTCGTACA AATCGATCCCGAGCGATGAGAAGAAGGACAATGGAGCGAAACCGTTGGTGGGCATACTGA AGAATGGCAGCGTGACGGCGGCGTCGGAAAAGCCACCAACACCAAGTAGCAACAGTAGCC GCAGCCCCGGTTGGGAAAGTCTACGCAAAGCAACAGGGTACAGCCGAAAANCTGGGTGGC ATTCGTGGACAGGCCAAACTGGTTCGAACACGAAGCTTGCAGTGGGAATCCGNNTTTGGC AGACCGGGGAAAGAAGAAACCGAAAGGGGCTTCCTTGGAAGGTTCCGGACACGGGATTTC NTTACGGGGGCACACAGAAACGNCNTTTACGGCGAAAANGGCAAACGGGGGTTGGACGGT CCCANNTTGCCCCGTTTCGGCCAACGGGTGATTCCAAGCATCGACGACGG



consensusID : consensus_8124#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 870
fasta sequence
                              [GAGCGATGAGAAGAAGGACATGGAGCGAAACCGTNTGGTGGGCATACTGAAGAATGGCAGCGTGACGGCGGCGTCGGAAAAGCCACCACCACCAGTAGCAACAGTAGCCGCAGCCCCGGTGGAAAGTCCTACGCAAAGCAACGGTACAGCCGAAACTGGTGGCATTCGTGACAGCCAACTGCTCGACCACGAGCTGCAGTGGGAATCGCTTGCAGCGGAAGAGAACGAAGCGCTACTGAAGTCCGCACAGCATCCTACGGAGCAACAGACGCGTTACGGCGAAAGCAACGGGGTGGACGGTCCACGTGCCCGTATCGCCAACGGTAATCACCACCACCACCACCGCGTGACCGATCTGGACGATCCGTCCGACGGGCACGAGGAGGACAGCGAGCTAACCGACAACCCGGATGGTGGAGTAGTACTACACCGCACACAGCAGACCACACTGTCGCCAACGCCGCCGCCGCCGCCAAGGGTAGTAGTTCGCAACGCGGATCGCAATGTAGCACCATCATCATCATCTTCCTTCGCTTACGCCAGGCCGCCGCCGGACGAGGCGGTAGTGGTGAAACTGCTTGCAAGTAATGCTTCTGCCGATGGTGCTACTACTGTTCCAGCTGTCGATGCTGCTGATGGAGTGGTCATCCCCCCGGCGTCTTCTACTCACGCTTGTCAGCTCGATCTTGCAGGTGCCGCCGCAGCCGGAGCAGAGCAGCCCGGAAGGGACGGAGAGCCGCCTCTAAAGCCGAAGCCCTCGCTGCGCCTCAAGTACCGGAAGCAGGCGCCGATCTATCTCGGCCCCGACCGGCGCCAGTACGCCAACCCGATCAGCTACCTCGGTGGACCGCGGTACGATCTTGCCAAGCG]

[+] EMBL BX619962             [GAGCGATGAGAAGAAGGACATGGAGCGAAACCGTNTGGTGGGCATACTGAAGAATGGCAGCGTGACGGCGGCGTCGGAAAAGCCACCACCACCAGTAGCAACAGTAGCCGCAGCCCCGGTGGAAAGTCCTACGCAAAGCAACGGTACAGCCGAAACTGGTGGCATTCGTGACAGCCAACTGCTCGACCACGAGCTGCAGTGGGAATCGCTTGCAGCGGAAGAGAACGAAGCGCTACTGAAGTCCGCACAGCATCCTACGGAGCAACAGACGCGTTACGGCGAAAGCAACGGGGTGGACGGTCCACGTGCCCGTATCGCCAACGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BX620662             [                                                                                                                                                                             GCCAACTGCTCGACCACGAGCTGCAGTGGGAATCGCTTGCAGCGGAAGAGAACGAAGCGCTACTGAAGTCCGCACAGCATCCTACGGAGCAACAGACGCGTTACGGCGAAAGCAACGGGGTGGACGGTCCACGTGCCCGTATCGCCAACGGTAATCACCACCACCACCACCGCGTGACCGATCTGGACGATCCGTCCGACGGGCACGAGGAGGACAGCGAGCTAACCGACAACCCGGATGGTGGAGTAGTACTACACCGCACACAGCAGACCACACTGTCGCCAACGCCGCCGCCGCCGCCAAGGGTAGTAGTTCGCAACGCGGATCGCAATGTAGCACCATCATCATCATCTTCCTTCGCTTACGCCAGGCCGCCGCCGGACGAGGCGGTAGTGGTGAAACTGCTTGCAAGTAATGCTTCTGCCGATGGTGCTACTACTGTTCCAGCTGTCGATGCTGCTGATGGAGTGGTCATCCCCCCGGCGTCTTCTACTCACGCTTGTCAGCTCGATCTTGCAGGTGCCGCCGCAGCCGGAGCAGAGCAGCCCGGAAGGGACGGAGAGCCGCCTCTAAAGCCGAAGCCCTCGCTGCGCCTCAAGTACCGGAAGCAGGCGCCGATCTATCTCGGCCCCGACCGGCGCCAGTACGCCAACCCGATCAGCTACCTCGGTGGACCGCGGTACGATCTTGCCAAGCG]


>consensus_8124#2 GAGCGATGAGAAGAAGGACATGGAGCGAAACCGTNTGGTGGGCATACTGAAGAATGGCAG CGTGACGGCGGCGTCGGAAAAGCCACCACCACCAGTAGCAACAGTAGCCGCAGCCCCGGT GGAAAGTCCTACGCAAAGCAACGGTACAGCCGAAACTGGTGGCATTCGTGACAGCCAACT GCTCGACCACGAGCTGCAGTGGGAATCGCTTGCAGCGGAAGAGAACGAAGCGCTACTGAA GTCCGCACAGCATCCTACGGAGCAACAGACGCGTTACGGCGAAAGCAACGGGGTGGACGG TCCACGTGCCCGTATCGCCAACGGTAATCACCACCACCACCACCGCGTGACCGATCTGGA CGATCCGTCCGACGGGCACGAGGAGGACAGCGAGCTAACCGACAACCCGGATGGTGGAGT AGTACTACACCGCACACAGCAGACCACACTGTCGCCAACGCCGCCGCCGCCGCCAAGGGT AGTAGTTCGCAACGCGGATCGCAATGTAGCACCATCATCATCATCTTCCTTCGCTTACGC CAGGCCGCCGCCGGACGAGGCGGTAGTGGTGAAACTGCTTGCAAGTAATGCTTCTGCCGA TGGTGCTACTACTGTTCCAGCTGTCGATGCTGCTGATGGAGTGGTCATCCCCCCGGCGTC TTCTACTCACGCTTGTCAGCTCGATCTTGCAGGTGCCGCCGCAGCCGGAGCAGAGCAGCC CGGAAGGGACGGAGAGCCGCCTCTAAAGCCGAAGCCCTCGCTGCGCCTCAAGTACCGGAA GCAGGCGCCGATCTATCTCGGCCCCGACCGGCGCCAGTACGCCAACCCGATCAGCTACCT CGGTGGACCGCGGTACGATCTTGCCAAGCG



consensusID : consensus_8124#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 527
fasta sequence
                              [TCCTTACCAAGTCCTCTATTTGATCNATATGTGTGTGTGCTGTGTGTGAGTGTATGTGTGGGTGTACGTTTGTGTGATTTAATTTGTGCGTGTTGGAATGTGCGCTCGGTCATTACTGGGCATTACTGTATCTGTGTTGGATGTGCTGCGCTGTGCTTGCGCCGGCGAACGGTACACGGCTCTCTATGTGTATGTTGTGTGTGTGAGTGTGTTTGTATACAATGGGTGGTAGGCAACTGGTCAACGAGCTAGGACATTCCCAAACTGTGTCTATCTCTCGTTTGTACCCTTAAGTGTCACACGTCGATGGTCGATTTATGAGGTAACGCGTGCGCTATTGTAAAGTTCTCACTGTTCTCACTGTAAAAAGGATTTAAGCCTATCCAACCATTTTTTTATCCTCTCTCTCTCTCTCTCTCTATCTCAACCCTAGCTACCTAAAACAGCCAACTAGGCGACTCCTTCTGACTGCGTAAATAAAGTAATTTGATAAATCGAAAAAATTCCAANAACAAAAGCAGCATGTG]

[-] EMBL BX466655             [TCCTTACCAAGTCCTCTATTTGATCNATATGTGTGTGTGCTGTGTGTGAGTGTATGTGTGGGTGTACGTTTGTGTGATTTAATTTGTGCGTGTTGGAATGTGCGCTCGGTCATTACTGGGCATTACTGTATCTGTGTTGGATGTGCTGCGCTGTGCTTGCGCCGGCGAACGGTACACGGCTCTCTATGTGTATGTTGTGTGTGTGAGTGTGTTTGTATACAATGGGTGGTAGGCAACTGGTCAACGAGCTAGGACATTCCCAAACTGTGTCTATCTCTCGTTTGTACCCTTAAGTGTCACACGTCGATGGTCGATTTATGAGGTAACGCGTGCGCTATTGTAAAGTTCTCACTGTTCTCACTGTAAAAAGGATTTAAGCCTATCCAACCATTTTTTTATCCTCTCTCTCTCTCTCTCTCTATCTCAACCCTAGCTACCTAAAACAGCCAACTAGGCGACTCCTTCTGACTGCGTAAATAAAGTAATTTGATAAATCGAAAAAATTCCAANAACAAAAGCAGCATGTG]


>consensus_8124#3 TCCTTACCAAGTCCTCTATTTGATCNATATGTGTGTGTGCTGTGTGTGAGTGTATGTGTG GGTGTACGTTTGTGTGATTTAATTTGTGCGTGTTGGAATGTGCGCTCGGTCATTACTGGG CATTACTGTATCTGTGTTGGATGTGCTGCGCTGTGCTTGCGCCGGCGAACGGTACACGGC TCTCTATGTGTATGTTGTGTGTGTGAGTGTGTTTGTATACAATGGGTGGTAGGCAACTGG TCAACGAGCTAGGACATTCCCAAACTGTGTCTATCTCTCGTTTGTACCCTTAAGTGTCAC ACGTCGATGGTCGATTTATGAGGTAACGCGTGCGCTATTGTAAAGTTCTCACTGTTCTCA CTGTAAAAAGGATTTAAGCCTATCCAACCATTTTTTTATCCTCTCTCTCTCTCTCTCTCT ATCTCAACCCTAGCTACCTAAAACAGCCAACTAGGCGACTCCTTCTGACTGCGTAAATAA AGTAATTTGATAAATCGAAAAAATTCCAANAACAAAAGCAGCATGTG



consensusID : consensus_8124#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 337
fasta sequence
                              [AGCCAGAAAATTTTCNNNGGCCCCCCGAGGTTCNCATACATCCTCTATTATCCATATGTGTGTGTGCTGGGTGTGAGTGTATGTGTGGGTGTACGTTTGTGTGATTAATTTGTGCGTGTTGGAATGTGCGCGCGGTCATTACTGGGCATTACTGTATCTGTGTTGGATGTGCTGCGCTGTGCTTGCGCCGGCGAACGGTACACGGTCTCTATGTGTATGTGTGTGTGTGATGTGTGGTATACAATGGGTGGTAGGCAACTGGTCAACGAGCTAGACATTCCCAAATGTGTCTATCTCTCGTTGTACCCTTAAATGTCACACGTCGATGGTCGATTAT]

[+] EMBL AL696647             [AGCCAGAAAATTTTCNNNGGCCCCCCGAGGTTCNCATACATCCTCTATTATCCATATGTGTGTGTGCTGGGTGTGAGTGTATGTGTGGGTGTACGTTTGTGTGATTAATTTGTGCGTGTTGGAATGTGCGCGCGGTCATTACTGGGCATTACTGTATCTGTGTTGGATGTGCTGCGCTGTGCTTGCGCCGGCGAACGGTACACGGTCTCTATGTGTATGTGTGTGTGTGATGTGTGGTATACAATGGGTGGTAGGCAACTGGTCAACGAGCTAGACATTCCCAAATGTGTCTATCTCTCGTTGTACCCTTAAATGTCACACGTCGATGGTCGATTAT]


>consensus_8124#4 AGCCAGAAAATTTTCNNNGGCCCCCCGAGGTTCNCATACATCCTCTATTATCCATATGTG TGTGTGCTGGGTGTGAGTGTATGTGTGGGTGTACGTTTGTGTGATTAATTTGTGCGTGTT GGAATGTGCGCGCGGTCATTACTGGGCATTACTGTATCTGTGTTGGATGTGCTGCGCTGT GCTTGCGCCGGCGAACGGTACACGGTCTCTATGTGTATGTGTGTGTGTGATGTGTGGTAT ACAATGGGTGGTAGGCAACTGGTCAACGAGCTAGACATTCCCAAATGTGTCTATCTCTCG TTGTACCCTTAAATGTCACACGTCGATGGTCGATTAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8124#3      ------------------------------------------------------------
consensus_8124#4      ------------------------------------------------------------
consensus_8124#0      CAACCGGGCAACGAGCTAGGACATTCCCAAACTGTGTCTATCTCTCCTTTTACCCTTAAG 60
consensus_8124#1      ------------------------------------GCAGAATCGCGCACGAGGACGACC 24
consensus_8124#2      ------------------------------------------------------------
                                                                                  

consensus_8124#3      ------------------------------------------------------------
consensus_8124#4      ------------------------------------------------------------
consensus_8124#0      TGTCACACGTCGATGGTCGATTAATGAGGTAACGCGTGCGCAATTGTAAAGTTCTCACTG 120
consensus_8124#1      GATCCGCGCTTTGCCGTGTACAAAAGC-TACGACGGTTGCCTGTCGAATATCTTCATCCA 83
consensus_8124#2      ----------GAGCGATGAGAAGAAGGACATGGAGCGAAACCGTNTGGTGG--GCATACT 48
                                                                                  

consensus_8124#3      ------------------------------------------------------------
consensus_8124#4      ------------------------------------------------------------
consensus_8124#0      TTCTCACTGTAAAAAGGATTTAGGCCTATCCAACCATTTTTTATCCTCTCTCTCTCTATC 180
consensus_8124#1      GGTCAATAATGAAACGATGAAACCGCTGGAGGAGTACATGCTGTTCACGAAGAGCGAGGC 143
consensus_8124#2      GAAGAATGGCAGCGTGACGGCGGCGTCGGAAAAGCCACCACCACCAGTAGCAACAGTAGC 108
                                                                                  

consensus_8124#3      ------------------------------------------------------------
consensus_8124#4      -------------------------------------------------AGCCAGA-AAA 10
consensus_8124#0      TCAGCCTAGCTACCTAAAACGCCAACTAGGCGACTCCTTCTGACTGCGTAAATAAA-GTA 239
consensus_8124#1      GGAAACCATTACCGTGATCAACTCGCAGGGCGTACGGTCGGCCCAGTGCAAGCAGT-TCG 202
consensus_8124#2      CGCAGCCCCGGTGGAAAGTCCTACGCAAAGCA-ACGGTACAGCCGAAACTGGTGGCATTC 167
                                                                                  

consensus_8124#3      --------------------TCCTTACCAAGTCCTCTATTTG--ATCNATATGTGTGTGT 38
consensus_8124#4      TTTTCNNNGGCCCCCCGAGGTTCNCAT-ACATCCTCTATT----ATCCATATGTGTGTGT 65
consensus_8124#0      ATTTGATAAATCGACTTCTCCTCGTTC-CTGTCTTCTATACA--GTAAAGCGCTCAACGA 296
consensus_8124#1      ATGTCATCCAGAAGCTGACGCCCTTCAACGAGCCGGCACTCAACATGACTTCGGTTATCG 262
consensus_8124#2      GTGACAGCCAACTGCT--CGACC----ACGAGCTG-CAGTGGGAATCGCTT--GCAGCGG 218
                                            *         *    *       *              

consensus_8124#3      GCTGTGTGTGAGTGTATG-TGTGGGTGTACGTTTGTGTGATTTAATT-TGTGCGT-GTTG 95
consensus_8124#4      GCTGGGTGTGAGTGTATG-TGTGGGTGTACGTTTGTGTGATT-AATT-TGTGCGT-GTTG 121
consensus_8124#0      CCCTTTTTTAAAGATTTAATGTAACTAAAAACGAGTGTCTCT---TT-TCTCCGTTGTTG 352
consensus_8124#1      ACAAGAACTGGGTGGTCGATGCACCGACGCGCCTACCGTACAAAGCGGTCTACTTTGATC 322
consensus_8124#2      AAGAGAACGAAGCGCTACTGAAGTCCGCACAGC-ATCCTACGGAGCAACAGACGC-GTTA 276
                                                                          *   * * 

consensus_8124#3      GAATGTGCGCTCGGTCATTACTGGGCATTACTGTATCTGTGTTGGATG--TGCTGCGCTG 153
consensus_8124#4      GAATGTGCGCGCGGTCATTACTGGGCATTACTGTATCTGTGTTGGATG--TGCTGCGCTG 179
consensus_8124#0      CACTGTACACGTGTCCCTCGATCGCCGCATACGTCTCCACTATTCATGCCTCCCCCCCTT 412
consensus_8124#1      CGTCGACCAAGGAGGAAAAAACGCAGGTCGTGTTCATCACGCTCACCGCCATCTTCGTCA 382
consensus_8124#2      CGGCGAAAGCAACGGGGTGGACGGTCCACGTGCCCGTATCGCCAACGGTAATCACCACCA 336
                          *                                          *    *  *    

consensus_8124#3      TGCTTGCGCCG-G--CGAACGGTACACGGCTCTCTATGTGTATGTTGTGTGTGTGAGTGT 210
consensus_8124#4      TGCTTGCGCCG-G--CGAACGGTACACGG-TCTCTATGTGTATGT-GTGTGTGTGA-TGT 233
consensus_8124#0      CGCTCGCTTCGCG--TACGCCCCACACGCACACTTCTCATTCTCGCTCATATGTGCTCGC 470
consensus_8124#1      TCATCGTGGTGTG--CTGCCTGATCGAGGTGTACCGGTCGGACCGGGAGTAC-CGCAAGC 439
consensus_8124#2      CCACCACCGCGTGACCGATCTGGACGATCCGTCCGACGGGCACGAGGAGGAC-AGCGAGC 395
                                * *      *    *                             *   * 

consensus_8124#3      GTTTGTATACAATGGGTGGTAGGCAACTGGTCAACGAGCTAGGACATTCC-CAAACTGTG 269
consensus_8124#4      GTG-GTATACAATGGGTGGTAGGCAACTGGTCAACGAGCTAG-ACATTCC-CAAA-TGTG 289
consensus_8124#0      ACACCTTGCTCTAGGATGGTGGAGTAGTACTACACCGCACACAGCAGACC--ACACTGTC 528
consensus_8124#1      GCATCGAGCGCCAGACGGACGAGGACATCATCTGGAGCAAGGAGCAGGCGGCAAAATGCA 499
consensus_8124#2      TAACCGACAACCCGGATGGTGGAGTAGTACTACACCGCACACAGCAGAC--CACACTGTC 453
                                   *   *         *  *             **  *   * * **  

consensus_8124#3      TCT---ATCTCTCGTTTGTACCCTTAAGTG-------TCACACGTCGATGGTCGATTTAT 319
consensus_8124#4      TCT---ATCTCTCGTT-GTACCCTTAAATG-------TCACACGTCGATGGTCGATT-AT 337
consensus_8124#0      GCC---AACGC-CGCCGCCGCCGCCAAGGG-------TAGTAGTTCGCAACGCGGATCGC 577
consensus_8124#1      GATCGAAACGTCCACCACGAACGTGAAGGGATTTTCGTACAAATCGATCCCGAGCGATGA 559
consensus_8124#2      GCC---AACG-CCGCCGCCGCCGCCAAGGG-------TAGTAGTTCGCAACGCGGATCGC 502
                            * *   *        *   **  *       *   *           *      

consensus_8124#3      GAGGTAACGCGTGCGCTATTGTAAAGTTCTCACTGTTCT----CACTGTAAAAAGG-ATT 374
consensus_8124#4      ------------------------------------------------------------
consensus_8124#0      AATGTAGCACCATCATCATCATCTTCCTTCGCTTACGCCAGGCCGCCGCCGGACGA-GGC 636
consensus_8124#1      GAAGAAGGACAATGGAGCGAAACCGTTGGTGGGCATACTGAAGAATGGCAGCGTGACGGC 619
consensus_8124#2      AATGTAGCACCATCATCATCATCTTCCTTCGCTTACGCCAGGCCGCCGCCGGACGA-GGC 561
                                                                                  

consensus_8124#3      TAAGCCTATCCAACCATTTTTTTATCCTCTCTCTCTCTCTCTCTCTATCTCAACCCTAGC 434
consensus_8124#4      ------------------------------------------------------------
consensus_8124#0      GGTAGTGGTGAAACTGCTTGCAAGTAATGCTTCTGCCGATGGTGCTACTACTGTTCCAGC 696
consensus_8124#1      GGCGTCGGAAAAGCCACCAACACCAAGTAG--CAACAGTAGCCGCAGCCCCGGTTGGGAA 677
consensus_8124#2      GGTAGTGGTGAAACTGCTTGCAAGTAATGCTTCTGCCGATGGTGCTACTACTGTTCCAGC 621
                                                                                  

consensus_8124#3      TACCTAAAACAG-CCA---ACT---AGGCGACTCCTTCTGACTGCGTAAATAAA---GTA 484
consensus_8124#4      ------------------------------------------------------------
consensus_8124#0      TGTCGATGCTGC-TGATGGAGT---GGTCATCCCCCCGGCGTCTTCTACTCACG---CTT 749
consensus_8124#1      AGTCTACGCAAAGCAACAGGGTACAGCCGAAAANCTGGGTGGCATTCGTGGACAGGCCAA 737
consensus_8124#2      TGTCGATGCTGC-TGATGGAGT---GGTCATCCCCCCGGCGTCTTCTACTCACG---CTT 674
                                                                                  

consensus_8124#3      ATTTGATAAATCGAAAAAAT-TCCAANAACAAAAGCAGCATGTG---------------- 527
consensus_8124#4      ------------------------------------------------------------
consensus_8124#0      GTCAGCTCGATCTTGCAGGT-GCCGCCGCAGCCGGAGCAGAGCAGCCCGG------AAGG 802
consensus_8124#1      ACTGGTTCGAACACGAAGCTTGCAGTGGGAATCCGNNTTTGGCAGACCGGGGAAAGAAGA 797
consensus_8124#2      GTCAGCTCGATCTTGCAGGT-GCCGCCGCAGCCGGAGCAGAGCAGCCCGG------AAGG 727
                                                                                  

consensus_8124#3      ------------------------------------------------------------
consensus_8124#4      ------------------------------------------------------------
consensus_8124#0      GACGGAGAGCCGCCTCTAAAGCCGAAGCCCTCGCTGCGCCTCAAGTACCGG---AAGCAG 859
consensus_8124#1      AACCGAAAGGGGCTTCCTTGGAAGGTTCCGGACACGGGATTTCNTTACGGGGGCACACAG 857
consensus_8124#2      GACGGAGAGCCGCCTCTAAAGCCGAAGCCCTCGCTGCGCCTCAAGTACCGG---AAGCAG 784
                                                                                  

consensus_8124#3      ------------------------------------------------------------
consensus_8124#4      ------------------------------------------------------------
consensus_8124#0      GCGCCG-ATCTATCTCGGCCCCGACCGGCGCCAGTACGCCAACCCGATCAGCTACCTCGG 918
consensus_8124#1      AAACGNCNTTTACGGCGAAAANGGCAAACGGGGGTTGGACGGTCCCANN--TTGCCCCGT 915
consensus_8124#2      GCGCCG-ATCTATCTCGGCCCCGACCGGCGCCAGTACGCCAACCCGATCAGCTACCTCGG 843
                                                                                  

consensus_8124#3      ------------------------------------------------------------
consensus_8124#4      ------------------------------------------------------------
consensus_8124#0      TG-GACCGCGGTACGATCTTGCCAAGCGCAGCTCGGTCGCTTCTAGTCAGGGCGATAGCG 977
consensus_8124#1      TTCGGCCAACGGGTGATTCCAAGCATCGACGACGG------------------------- 950
consensus_8124#2      TG-GACCGCGGTACGATCTTGCCAAGCG-------------------------------- 870
                                                                                  

consensus_8124#3      ------------------------------------------------------------
consensus_8124#4      ------------------------------------------------------------
consensus_8124#0      TTACTAGCCTCAATTCGATCCTGTCCTTAGATTAGTGGTAGCGCTCATTACAATGGGCCA 1037
consensus_8124#1      ------------------------------------------------------------
consensus_8124#2      ------------------------------------------------------------
                                                                                  

consensus_8124#3      ----------------------------------------------------------
consensus_8124#4      ----------------------------------------------------------
consensus_8124#0      ATGACGCGGGCGGTGGCGCCCTCCGTCTTCTACGCCCAAAGTTAGTCGTGAAAATGAG 1095
consensus_8124#1      ----------------------------------------------------------
consensus_8124#2      ----------------------------------------------------------
                                                                                




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)