These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8132#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 836 fasta sequence [GAGGCAGATCGGC-C-NGGATTCAGTGCAGTCGTTTCTCCGCTCTTTCCCGTGATGAAAATTGTACGCAGTATTTAAATTGTGTTCTGATATTCCTCATCCACCACACACACACCTTCCATCGTGATGCTTTCGTTTTTCCGCAAGAAAACCTCCGACGAGTTGCCCACCGGTGGCTCCGCACCGTCGGCCGCGAAAG-GCAATCCATCAATCGGTGGAACAACAGCAAATGGTGAAGTGCCTCCACGACCGAGCCTGCAAGAGCTGGGCTACCGAAATGCGAACGATTTGCGTGAAACCATCTACGACTTTCTGCGCACAATACGCGACCCG-GAAAAGCCCAGCACGCTGGAAGATCTGCACGTCGTGTACGAGGAGGGAATATTCGTGAACGAGCCAACGCCGGGCAACGTGAACGTGGTGCGGGTTGAGTTTAATCCGACCGTACCGCACTGTTCGCTGGCAACGCTGATAGGGCTGTGCA-TACGGGTGAAAA-TTGAGC-GAAACATTACGCACAGCCTGAAGCTGGACATCTAC-ATCAAGAAAGGTGCCCAC-GCGACGGAAGACGAAATTAA--C-AAGCAGATCA-ATGATAA-GGAACGA-ATAGC-AGCGGCTATGGAGAATCCAAA-CCTCAG-ACA-GTTGGT-GGAGAA-CT-GCATC-A-AAG-ATG-AA-GATTGA--AAGACTGAACGCTATT-GGTG-CAATAAATCA-TTTTTTTGTGGTCATGGAAGGTGTGTGCTCACGGGGTAAGCAGTTGAAGGTAATCAATTGTTGGTAAAATAAATAGTTTCCTATATAAGTACGAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTGCCCGAGCCGCCCC] [+] EMBL BX468407 [GAGGCAGATCGGCACGTGGATTCAGTGCAGTCGTTTCTCCGCTCTTTCCCGTGATGAAAATTGTACGCAGTATTTAAATTGTGTTCTGATATTCCTCATCCACCACACACACACCTTCCATCGTGATGCTTTCGTTTTTCCGCAAGAAAACCTCCGACGAGTTGCCCACCGGTGGCTCCGCACCGTCGGCCGCGAAAG GCAATCCATCAATCGGTGGAACAACAGCAAATGGTGAAGTGCCTCCACGACCGAGCCTGCAAGAGCTGGGCTACCGAAATGCGAACGATTTGCGTGAAACCATCTACGACTTTCTGCGCACAATACGCGACCCG GAAAAGCCCAGCACGCTGGAAGATCTGCACGTCGTGTACGAGGAGGGAATATTCGTGAACGAGCCAACGCCGGGCAACGTGAACGTGGTGCGGGTTGAGTTTAATCCGACCGTACCGCACTGTTCGCTGGCAACGCTGATAGGGCTGTGCAGTACGGGTGAAAATTTGAGCGGAAACATTACGCACAGCCTGAAGCTGGACATCTACGATCAAGAAAGGTGCCCACAGCGACGGAAGACGAAATTAAAGCAAAGCAGATCACATGATAAGGGAACGAGATAGCAAGCGGCTATGGAGAATCCAAAGCCTCAGNACAGGTTGGTGGGAGAACCTGGGNTCGANANGCATGNAAGGATGGANNAGGACTGAACGCTATTGGGTGNCAATAnn ] [+] EMBL AL934574 [ ATNGGC C NAGCATCAGTGCAGTCGTTTCTCCGCTCTTTCCCGTGATGAAAATTGTACGCAGTATTTAAATTGTGTTCTGATATTCCTCATCCACCACACACACACCTTCCATCGTGATGCTTTCGTTTTTCCGCAAGAAAACCTCCGACGAGTTGCCCACCGGTGGCTCCGCACCGTCGGCCGCGAAAG GCAATCCATCAATCGGTGGAACAACAGCAAATGGTGAAGTGCCTCCACGACCGAGCCTGCAAGAGCTGGGCTACCGAAATGCGAACGATTTGCGTGAAACCATCTACGACTTTCTGCGCACAATACGCGACCCG GAAAAGCCCAGCACGCTGGAAGATCTGCACGTCGTGTACGAGGAGGGAATATTCGTGAACGAGCCAACGCCGGGCAACGTGAACGTGGTGCGGGTTGAGTTTAATCCGACCGTACCGCACTGTTCGCTGGCAACGCTGATAGGGCTGTGCA TACGGGTGAAAA TTGAGC GAAACATTACGCACAGCCTGAAGCTGGACATCTAC ATCAAGAAAGGTGCCCAC GCGACGGAAGACGAAATTAA C AA ] [+] EMBL BM637041 [ ccGATTCAGTGCAGTCGTTTCTCCGCTCTTTCCCGTGATGAAAATTGTACGCAGTATTTAAATTGTGTTCTGATATTCCTCATCCA TCACACTCCTTGCCTCGTGATGCTTTCGTTTTTCCGCAAGAAAACCTCCGACGAGTTGCCCACCGGGGGATCCGCACCGTCGGCCGCGAAAG GCAATCCGTCAATCGGTGGAACAACAGCAAATGGTGAAGTGCCTCCACGACCGAGCCTGCAAGAGCTGGGCTACCGAAATGCGAACGATTTGCGTGAAACCATCTACGACTTTCTGCGCACAATACGCGACCCG GAAAAGCCCAGCACGCTGGAAGATCTGCACGTCGTGTACGAGGAGGGAATATTCGTGAACGAGCCGACGCCGGGCAACGTGAACGTGGTGCGGGTCGAGTTTAATCCGACCGTACCGCACTGTTCGCTGGCAACGCTGATAGGGCTGTGCA TACGGGTGAAAA TAGAGC GAAACATTACGCACAGTCTGAAGCTGGACATCTAC ATCAAGAAAGGTGCCCAC GCGACGGAAGACGAAATTAA C AAGCAGATCA ATGATAA GGAACGA ATAGC AGCGGCTATGGAGAATCCAAA CCTCAG ACA GTTGGT GGAGAA CT GCATC A AAG ATG AA GATTGA AAGACT ] [+] EMBL CNS090K8 [ cATTCAGTGCAGTCGTTTCTCCGCTCTTTCCCGTGATGAAAATTGTACGCAG ATTTAAATTGTGTTCTGATATTCCTCATCCACCACACACACACCTTCCATCGTGATGCTTTCGTTTTTCCGCAAGAAAACCTCCGACGAGTTGCCCACCGGTGGCTCCGCACCGTCGGCCGCGAAAGCGCAATCCATCAATCGGTGGAACAACAGCAAATGGTGAAGTGCCTCCACGACCGAGCCTGCAAGAGCTGGGCTACCGAAATGCGAACGATTTGCGTGAAACCATCTACGACTTTCTGCGCACAATACGCGACCCGCGAAAAGCCCAGCACGCTGGAAGATCTGCACGTCGTGTACGAGGAGGGAATATTCGTGAAAAAACCAACGCCGGGCAACGTGAACGTGGTGCGGGTTGAGTTTAATCCGACCGTACCGCACTGTTCGCTGGCAACGCTGATAGGGCTGTGCA TACGGGTGAAAA TTGAGC GAAACATTACGCACAGCCTGAAGCTGGACATCTAC ATCAAGAAAGGTGCCCAC GCGACGGAAGACGAAATTAA C AAGCAGATCA ATGATAA GGAACGA ATAGC AGCGGCTATGGAGAATCCAAA CCTCAG ACA GTTGGT GGAGAA CT GCATC A AAG ATG AA GATTGA AAGACTGAACGCTATT GGTG CAATAAATCA TTTTTTTGTGGTCATGGAAGGTGTGTGCTCACGGGGTAAGCAGTTGAAGGTAATCAATTGTTGGTAAAATAAATAGTTTCCTATATAAGTACGAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTGCCCGAGCCGCCCC] [+] EMBL BM599799 [ ccgGTTTCTCCGCTCTTTCCCGTGATGAAAATTGTACGCAGTATTTAAATTGTGTTCTGATATTCCTCATCCA TCACACTCCTTGCCTCGTGATGCTTTCGTTTTTCCGCAAGAAAACCTCCGACGAGTTGCCCACCGGGGGATCCGCACCGTCGGCCGCGAAAG GCAATCCGTCAATCGGTGGAACAACAGCAAATGGTGAAGTGCCTCCACGACCGAGCCTGCAAGAGCTGGGCTACCGAAATGCGAACGATTTGCGTGAAACCATCTACGACTTTCTGCGCACAATACGCGACCCG GAAAAGCCCAGCACGCTGGAAGATCTGCACGTCGTGTACGAGGAGGGAATATTCGTGAACGAGCCGACGCCGGGCAACGTGAACGTGGTGCGGGTCGAGTTTAATCCGACCGTACCGCACTGTTCGCTGGCAACGCTGATAGGGCTGTGCA TACGGGTGAAAA TAGAGC GAAACATTACGCACAGCCTGAAGCTGGACATCTAC ATCAAGAAAGGTGCCCAC GCGACGGAAGACGAAATTAA C AAGCAGATCA ATGATAA GGAACGA ATAGC AGCGGCTATGGAGAATCCAAA CCTCAG ACA GTTGGT GGAGAA CT GCATC A AAG ATG AA GATTGA AAGACTGAACGCTATC GGTG CAATAAATCATTTTTTTTGTGGTCATGGAAGGTGTG ] [+] EMBL BX612222 [ AACGCCGGGCAACGTGAACGTGGTGCGGGTTGAGTTTAATCCGACCGTACCGCACTGTTCGCTGGCAACGCTGATAGGGCTGTGCA TACGGGTGAAAA TTGAGC GAAACATTACGCACAGCCTGAAGCTGGACATCTAC ATCAAGAAAGGTGCCCAC GCGACGGAAGACGAAATTAA C AAGCAGATCA ATGATAA GGAACGA ATAGC AGCGGCTATGGAGAATCCAAA CCTCAG ACA GTTGGT GGAGAA CT GCATC A AAG ATG AA GATTGA AAGACTGAACGCTATT GGTG CAATAAATCA TTTTTTTGTGGT ATGGAAGGTGTGTGCTCACGGGGTAAGCAGTTGAAGGTAATCAATTGTTGGTAAAATAAATAGTTTCCTA ] consensusID : consensus_8132#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 440 fasta sequence [GTTTCTCCGCTCTTTCCCGTGATGAAAATTGTACGCAGTATTTAAATTGTGTTCTGATATTCCTCATCCACCACACACACACCTTCCATCGTGGATGCTTTCGTTTTTCCGCNAGGAAAACCTCCGGACGGAGTTGCCCACCGGTGGCTCCGCACCGTCGGCCGCGGAAAGGCAATCCATCAATCGGTGGNAACAACAGCAAATGGTGAAGTGCCTCCACGGANNCGGAGCCTGCAAGGAGCTGGGCTACCGNAAATGCGGAACGGATTTGCGTGAAACCATCTACGGACTTTCTGCGCACAATNACGCGGACCCGGGAAAAGCCCAGCNACGCTGGGAAGGATCTGCNACGTCGTGTACGGAGGGAGGGGAANNTTCGTGGAACGGAGCCAACGCCGGGCAACGTGCAACGTGGTGCGGGTTCGCAGTTTAATCNCGGA] [+] EMBL BX619830 [GTTTCTCCGCTCTTTCCCGTGATGAAAATTGTACGCAGTATTTAAATTGTGTTCTGATATTCCTCATCCACCACACACACACCTTCCATCGTGGATGCTTTCGTTTTTCCGCNAGGAAAACCTCCGGACGGAGTTGCCCACCGGTGGCTCCGCACCGTCGGCCGCGGAAAGGCAATCCATCAATCGGTGGNAACAACAGCAAATGGTGAAGTGCCTCCACGGANNCGGAGCCTGCAAGGAGCTGGGCTACCGNAAATGCGGAACGGATTTGCGTGAAACCATCTACGGACTTTCTGCGCACAATNACGCGGACCCGGGAAAAGCCCAGCNACGCTGGGAAGGATCTGCNACGTCGTGTACGGAGGGAGGGGAANNTTCGTGGAACGGAGCCAACGCCGGGCAACGTGCAACGTGGTGCGGGTTCGCAGTTTAATCNCGGA] consensusID : consensus_8132#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 365 fasta sequence [GGCAAGAATCGCCACGAGGTGAAGTCGTTTCTCCGCTCTTTCCCGTGATGAAAATTGTACGCAGTATTTAAATTGTGTTCTGATATTCCTCATCCACCACACACACACCTTCCATCGTGATGCTTTCGTTTTTCCGCAAGAAAACCTCCGACGAGTTGCCCACCGGTGGCTCCGCACCGTCGGCGCGAAAGGCAATCCATCAATCGGTGGAACAACAGCCAATGGTGAAGTGCCTCCACGACGAGCCTGCAAGAGCTGGGCTACCGAAATGCGAACGATTTGCGTGAAACCATCTACGACATTTCTGGCGCACAATTACGCGAACCGGAAAAGCCCAGCACGCTGGAAGATCTCGCACGTCGTGT] [+] EMBL AL696327 [GGCAAGAATCGCCACGAGGTGAAGTCGTTTCTCCGCTCTTTCCCGTGATGAAAATTGTACGCAGTATTTAAATTGTGTTCTGATATTCCTCATCCACCACACACACACCTTCCATCGTGATGCTTTCGTTTTTCCGCAAGAAAACCTCCGACGAGTTGCCCACCGGTGGCTCCGCACCGTCGGCGCGAAAGGCAATCCATCAATCGGTGGAACAACAGCCAATGGTGAAGTGCCTCCACGACGAGCCTGCAAGAGCTGGGCTACCGAAATGCGAACGATTTGCGTGAAACCATCTACGACATTTCTGGCGCACAATTACGCGAACCGGAAAAGCCCAGCACGCTGGAAGATCTCGCACGTCGTGT] [-] EMBL CNS090K9 [ TTTCTCCGCTCTTTCCCGTGATGAAAATTGTACGCAGTATTTAAATTGTGTTCTGATATTCCTCATCCACAAAAAAAACACCTTCCATCGTGATGCTTTCGTTTTTCCGCAAGAAAACC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8132#0 GAGGCAGATCGGCCNGGATTCAGTGCAGTCGTTTCTCCGCTCTTTCCCGTGATGAAAATT 60 consensus_8132#2 -GGCAAGAATCGCCACGA---GGTGAAGTCGTTTCTCCGCTCTTTCCCGTGATGAAAATT 56 consensus_8132#1 ------------------------------GTTTCTCCGCTCTTTCCCGTGATGAAAATT 30 ****************************** consensus_8132#0 GTACGCAGTATTTAAATTGTGTTCTGATATTCCTCATCCACCACACACACACCTTCCATC 120 consensus_8132#2 GTACGCAGTATTTAAATTGTGTTCTGATATTCCTCATCCACCACACACACACCTTCCATC 116 consensus_8132#1 GTACGCAGTATTTAAATTGTGTTCTGATATTCCTCATCCACCACACACACACCTTCCATC 90 ************************************************************ consensus_8132#0 GTG-ATGCTTTCGTTTTTCCGCAAG-AAAACCTCCGAC--GAGTTGCCCACCGGTGGCTC 176 consensus_8132#2 GTG-ATGCTTTCGTTTTTCCGCAAG-AAAACCTCCGAC--GAGTTGCCCACCGGTGGCTC 172 consensus_8132#1 GTGGATGCTTTCGTTTTTCCGCNAGGAAAACCTCCGGACGGAGTTGCCCACCGGTGGCTC 150 *** ****************** ** ********** ******************** consensus_8132#0 CGCACCGTCGGCCGCG-AAAGGCAATCCATCAATCGGTGGAA-CAACAGCAAATGGTGAA 234 consensus_8132#2 CGCACCGTCGGC-GCG-AAAGGCAATCCATCAATCGGTGGAA-CAACAGCCAATGGTGAA 229 consensus_8132#1 CGCACCGTCGGCCGCGGAAAGGCAATCCATCAATCGGTGGNAACAACAGCAAATGGTGAA 210 ************ *** *********************** * ******* ********* consensus_8132#0 GTGCCTCCACG---ACCGAGCCTGCAAG-AGCTGGGCTACCGAAA-TGCGAAC--GATTT 287 consensus_8132#2 GTGCCTCCACG---AC-GAGCCTGCAAG-AGCTGGGCTACCGAAA-TGCGAAC--GATTT 281 consensus_8132#1 GTGCCTCCACGGANNCGGAGCCTGCAAGGAGCTGGGCTACCGNAAATGCGGAACGGATTT 270 *********** * *********** ************* ** **** * ***** consensus_8132#0 GCGTGAAACCATCTACGAC-TTTCTG-CGCACAAT-ACGCGACCC--GGAAAAGCCCAGC 342 consensus_8132#2 GCGTGAAACCATCTACGACATTTCTGGCGCACAATTACGCGAACC--GGAAAAGCCCAGC 339 consensus_8132#1 GCGTGAAACCATCTACGGACTTTCTG-CGCACAATNACGCGGACCCGGGAAAAGCCCAGC 329 ***************** ****** ******** ***** ** ************* consensus_8132#0 A-CGCTGGAA--GATCT-GCACGTCGTGTACGAGGAG---GGAATATTCGTGAAC--GAG 393 consensus_8132#2 A-CGCTGGAA--GATCTCGCACGTCGTGT------------------------------- 365 consensus_8132#1 NACGCTGGGAAGGATCTGCNACGTCGTGTACGGAGGGAGGGGAANNTTCGTGGAACGGAG 389 ****** * ***** ********* consensus_8132#0 CCAACGCCGGGCAACGTG-AACGTGGTGCGGGTTGAGTTTAATCCGACCGTACCGCACTG 452 consensus_8132#2 ------------------------------------------------------------ consensus_8132#1 CCAACGCCGGGCAACGTGCAACGTGGTGCGGGTTCGCAGTTTAATCNCGGA--------- 440 consensus_8132#0 TTCGCTGGCAACGCTGATAGGGCTGTGCATACGGGTGAAAATTGAGCGAAACATTACGCA 512 consensus_8132#2 ------------------------------------------------------------ consensus_8132#1 ------------------------------------------------------------ consensus_8132#0 CAGCCTGAAGCTGGACATCTACATCAAGAAAGGTGCCCACGCGACGGAAGACGAAATTAA 572 consensus_8132#2 ------------------------------------------------------------ consensus_8132#1 ------------------------------------------------------------ consensus_8132#0 CAAGCAGATCAATGATAAGGAACGAATAGCAGCGGCTATGGAGAATCCAAACCTCAGACA 632 consensus_8132#2 ------------------------------------------------------------ consensus_8132#1 ------------------------------------------------------------ consensus_8132#0 GTTGGTGGAGAACTGCATCAAAGATGAAGATTGAAAGACTGAACGCTATTGGTGCAATAA 692 consensus_8132#2 ------------------------------------------------------------ consensus_8132#1 ------------------------------------------------------------ consensus_8132#0 ATCATTTTTTTGTGGTCATGGAAGGTGTGTGCTCACGGGGTAAGCAGTTGAAGGTAATCA 752 consensus_8132#2 ------------------------------------------------------------ consensus_8132#1 ------------------------------------------------------------ consensus_8132#0 ATTGTTGGTAAAATAAATAGTTTCCTATATAAGTACGAAAAAAAAAAAAAAAAAAAAAAA 812 consensus_8132#2 ------------------------------------------------------------ consensus_8132#1 ------------------------------------------------------------ consensus_8132#0 GGCCAAATGTGCCCGAGCCGCCCC 836 consensus_8132#2 ------------------------ consensus_8132#1 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||