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Anopheles gambiae
cluster # 8138 cluster # 8138       Sequences # 9       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8138#0 length = 1547 sequences # 4  
consensus_8138#1 length = 1383 sequences # 4  
consensus_8138#2 length = 620 sequences # 1  

consensusID : consensus_8138#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1547
fasta sequence
                              [CCGATTTTAACGAAAACAATCAGTTGCTTTTTTAAATCATTTTATTCTTATGACGGTGGATTGAAGGCACTACTCGCGATTCTAGCGCGAGTTTCCGCTCTCAAGCAAGTGGATTTGGGTTATTTTTTTTATTTTTTAACGGAATGGAACAATCGAAAAGACGAACGGAACGAGAACAGCAAAAGAAAAACCCAAACCTTTTTACATACCGGACACAAATTGACTGCTGCTACGTCACTGTTACCGGCTGCTTACCGTTGAGTACACCAGCTGGGGTCGCGCTATTTGGCCGCAGTACAGTTACCGCAATACATCACATTTATAGAGATATATATATAAACAATGTATAAATATTTACAATGGTGCTGCTGCTGATGCCTCTCAGCTTCTTGTTGCTAAAATGGAGCCCCTGTTATAATGCAGTGGGAAACTGCCACGCATTTGGAGAGGGGACAATGAATGAGGAAGAAAAGTTCTATATATTTTTTCAAATCGTGACCGTTATTAACGCACTATAGCAGACAGTTTTGCCCGATGCGGATAGAGATGTATAGCTTGATAATGAACAGAAAAAA-----ACACACACACATTTTAAACGCTAGATTAAATACGTAGAACCGCGACAAGACAAGATAAGGTAGGGAGGAATTGACGAAGCGAGGTAGGATAAACAAACAAACAAACAAACGAAAAAATCGCCCACGCGTACAGGAATCGAAAATATATGTATATGCTAAAAACAAACAAAAATGAGGAAACAATAATCAGTGTTTTGGGAGGGGAAAATAAATAGGGAAACAAAACATTA-AAAAAAAAACAATTTCTAGCTTAAGCTTTTTGGCGTTTAAAGGCAACAAAAACGAGGAAAAACAGACGAAAAAAATACAAAATCGACTTAACAAAATCACTCGATAATCAGTAATAAATGCTCCTGGCGTTGTGCTCGCGATCGTATTGTGGCCACCCAGGGAAGACGGGCCATTTTCATCCATCCATCCATCAACACAAAACGGAGAAAAATATAGGGAAAGTAGGACCTTGTCTTACCGAACATTAAGAGCGAGAGATGAGGGGCAACAAATCGAACAAAACGGAAAGACTTAATCTCAAAATGTCGAACTACCTTTACCCCCGGCACGTTGCAAAACCATCCTCCCCGGAGGAGGGGATACGAAAGCAAGAAGAGAAAAGTTTTCAATATATTACAACAAGGCGAATTGCAACGTTTGCCAATGGAAGTAGGACGACGTACGACGGAATGTTGTTCACAGCAAGAGATTAGTTGTACCTTTCATAGAGCGTTTTAGAGTAGAAATTGTTTTGTTTTTTTTTTTGGTCGTGTGGTGTGTGATACATTTGCCGGTTGTGTGGGAAAGAAAACCCCGTTAACGCTATCGTGCTGGGGCGTTTCTAAAACGCTTGGTGTGTGTATGTTTGTCTAAGTGTATCTTGAATGGGGAGGGTGCTGTTTCAAGAAGGAAGAAATATTATAAAAAATCTAAATATAGCTAATTACATGAAAGTCAATGTGTTTCTTAAAGTCATGTTAC]

[+] EMBL BM594071             [CCGATTTTAACGAAAACAATCAGTTGCTTTTTTAAATCATTTTATTCTTATGACGGTGGATTGAAGGCACTACTCGCGATTCTAGCGCGAGTTTCCGCTCTCAAGCAAGTGGATTTGGGTTATTTTTTTTATTTTTTAACGGAATGGAACAATCGAAAAGACGAACGGAACGAGAACAGCAAAAGAAAAACCCAAACCTTTTTACATACCGGACACAAATTGACTGCTGCTACGTCACTGTTACCGGCTGCTTACCGTTGAGTACACCAGCTGGGGTCGCGCTATTTGGCCGCAGTACAGTTACCGCAATACATCACATTTATAGAGATATATATATAAACAATGTATAAATATTTACAATGGTGCTGCTGCTGATGCCTCTCAGCTTCTTGTTGCTAAAATGGAGCCCCTGTTATAATGCAGTGGGAAACTGCCACGCATTTGGAGAGGGGACAATGAATGAGGAAGAAAAGTTCTATATATTTTTTCAAATCGTGACCGTTATTAACGCACTATAGCAGACAGTTTTGCCCGATGCGGATAGAGATGTATAGCTTGATAATGAACAGAAAAAAAACACACACACACACATTTTAAACGCTAGATTAAATACGTAGAACCGCGACAAGACAAGATAAGGTgg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL BX615339             [                                                                                                                                                                                                                                                                                                                                                                                                    CTTGTTGCTAAAATGGAGCCCCTGTTATAATGCAGTGGGAAACTGCCACGCATTCGGAGAGGGGACAATGAATGAGGAAGAAAAGTTCTATATATTTTTTCAAATCGTGACCGTTATTAACGCACTATAGCAGACAGTTTTGCCCGATGCGGATAGAGATGTATAGCTTGATAATGAACAGAAAAAA     ACACACACACATTTTAAACGCTAGATTAAATACGTAGAACCGCGACAAGACAAGATAAGGTAGGGAGGAATTGACGAAGCGAGGTAGGATAAACAAACAAACAAACAAACGAAAAAATCGCCCACGCGTACAGGAATCGAAAATATATGTATATGCTAAAAACAAACAAAAATGAGGAAACAATAATCAGTGTTTTGGGAGGGGAAAATAAATAGGGAAACAAAACATTA AAAAAAAAACAATTTCTAGCTTAAGCTTTTTGGCGTTTAAAGGCAACAAAAACGAGGAAAAACAGACGAAAAAAATACAAAATCGACTTAACAAAATCACTCGATAATCAGTAATAAATGCTCCTGGCGTTGTGCTCGCGATCGTATTGTGGCCACCCAGGGAAGACGGGCCATTTTCATCCATCCATCCATCAACACAAAACGGAGAAAAATATAGGGAAAGTAGGACCTTGTCTTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AL695973             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    cccagggtTATATATTTTTTC AATCGTGACCG TATT ACGCACTATAGCAGACAGTTTTGCCCGATGCGGATAGAGATGTATAGCTTGATAATGAACAGAAAAAA     ACACACACACATTTTAAACGCTAGATTAAATACGTAGAACCGCGACAAGACAAGATAAGGTAGGCAGGAATTGACGAAGCGAGGTAGGATAAACAAACAAACAAACAAACGAAAAAATCGCCCACGCGTACAGGAATCGAAAATATATGTATATGCTAAAAACAAACAAAAATGAGGAAACAATAATCAGTGTTTTGGGAGGGGAAAATAAATAGGAAAACAAAACATTANAAAAAAAAACAATTTCTAGCTTAAGCTTTTTGGCGTTTAAAGGCAACAAAAACGAGGAAAAACAGACGAAAAAAATACAAAATCGACTTAACAAAATCACTCGATAATCAGTAATAAATGCTCCTGGCGTTGTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX609039             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CTTAACAAAATCACTCGATAATCAGTAATAAATGCTCCTGGCGTTGTGCTCGCGATCGTATTGTGGCCACCCAGGGAAGACGGGCCATTTTCATCCATCCATCCATCAACACAAAACGGAGAAAGATATAGGGAAAGTAGGACCTTGTCTTACCGAACATTAAGAGCGAGAGATGAGGGGCAACAAATCGAACAAAACGGAAAGACTTAATCTCAAAATGTCGAACTACCTTTACCCCCGGCACGTTGCAAAACCATCCTCCCCGGAGGAGGGGATACGAAAGCAAGAAGAGAAAAGTTTTCAATATATTACAACAAGGCGAATTGCAACGTTTGCCAATGGAAGTAGGACGACGTACGACGGAATGTTGTTCACAGCAAGAGATTAGTTGTACCTTTCATAGAGCGTTTTAGAGTAGAAATTGTTTTGTTTTTTTTTTTGGTCGTGTGGTGTGTGATACATTTGCCGGTTGTGTGGGAAAGAAAACCCCGTTAACGCTATCGTGCTGGGGCGTTTCTAAAACGCTTGGTGTGTGTATGTTTGTCTAAGTGTATCTTGAATGGGGAGGGTGCTGTTTCAAGAAGGAAGAAATATTATAAAAAATCTAAATATAGCTAATTACATGAAAGTCAATGTGTTTCTTAAAGTCATGTTAC]


>consensus_8138#0 CCGATTTTAACGAAAACAATCAGTTGCTTTTTTAAATCATTTTATTCTTATGACGGTGGA TTGAAGGCACTACTCGCGATTCTAGCGCGAGTTTCCGCTCTCAAGCAAGTGGATTTGGGT TATTTTTTTTATTTTTTAACGGAATGGAACAATCGAAAAGACGAACGGAACGAGAACAGC AAAAGAAAAACCCAAACCTTTTTACATACCGGACACAAATTGACTGCTGCTACGTCACTG TTACCGGCTGCTTACCGTTGAGTACACCAGCTGGGGTCGCGCTATTTGGCCGCAGTACAG TTACCGCAATACATCACATTTATAGAGATATATATATAAACAATGTATAAATATTTACAA TGGTGCTGCTGCTGATGCCTCTCAGCTTCTTGTTGCTAAAATGGAGCCCCTGTTATAATG CAGTGGGAAACTGCCACGCATTTGGAGAGGGGACAATGAATGAGGAAGAAAAGTTCTATA TATTTTTTCAAATCGTGACCGTTATTAACGCACTATAGCAGACAGTTTTGCCCGATGCGG ATAGAGATGTATAGCTTGATAATGAACAGAAAAAAACACACACACATTTTAAACGCTAGA TTAAATACGTAGAACCGCGACAAGACAAGATAAGGTAGGGAGGAATTGACGAAGCGAGGT AGGATAAACAAACAAACAAACAAACGAAAAAATCGCCCACGCGTACAGGAATCGAAAATA TATGTATATGCTAAAAACAAACAAAAATGAGGAAACAATAATCAGTGTTTTGGGAGGGGA AAATAAATAGGGAAACAAAACATTAAAAAAAAAACAATTTCTAGCTTAAGCTTTTTGGCG TTTAAAGGCAACAAAAACGAGGAAAAACAGACGAAAAAAATACAAAATCGACTTAACAAA ATCACTCGATAATCAGTAATAAATGCTCCTGGCGTTGTGCTCGCGATCGTATTGTGGCCA CCCAGGGAAGACGGGCCATTTTCATCCATCCATCCATCAACACAAAACGGAGAAAAATAT AGGGAAAGTAGGACCTTGTCTTACCGAACATTAAGAGCGAGAGATGAGGGGCAACAAATC GAACAAAACGGAAAGACTTAATCTCAAAATGTCGAACTACCTTTACCCCCGGCACGTTGC AAAACCATCCTCCCCGGAGGAGGGGATACGAAAGCAAGAAGAGAAAAGTTTTCAATATAT TACAACAAGGCGAATTGCAACGTTTGCCAATGGAAGTAGGACGACGTACGACGGAATGTT GTTCACAGCAAGAGATTAGTTGTACCTTTCATAGAGCGTTTTAGAGTAGAAATTGTTTTG TTTTTTTTTTTGGTCGTGTGGTGTGTGATACATTTGCCGGTTGTGTGGGAAAGAAAACCC CGTTAACGCTATCGTGCTGGGGCGTTTCTAAAACGCTTGGTGTGTGTATGTTTGTCTAAG TGTATCTTGAATGGGGAGGGTGCTGTTTCAAGAAGGAAGAAATATTATAAAAAATCTAAA TATAGCTAATTACATGAAAGTCAATGTGTTTCTTAAAGTCATGTTAC



consensusID : consensus_8138#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1383
fasta sequence
                              [ATCCCCACGAGNGGCAAAATCGGAAACATAATCAGTGTTTTGGGAGGGGAAAATAAATAGGAAAACAAAACATTAAAAAAAAAAACAATTTCTAGCTTAAGCTTTTTGGCGTTTAAAGGCAACAAAAACGGAAAAACAGACAAAAAAAAATACAAAATCGGCTTAACAAAATCACTCGATAATCAGTAATAAATGCTCCTGGCGTTGTGCTCGCGATCGTATTGTGGCCACCCAGGGAAGACGGGCCATTTTCATCCATCCATCCATCAACACAAAACGGAGAAAGATATAGGGAAAGTAGGACCTTGTCTTACCGAACATCAAGAGCGACAGATGAGGGGCAACAAATCGAACAAAACGGAAAGACTTAATCTCAAAATGTCGAACTACCTTTACCCCCGGCACGTTGCAAAACCATCCTCCCCGGAGGAGGGGATACGAAAGCAAGAAGAGAAAAGTTTTCAATATATTACAACAAGGCGAATTGCAACGTTTGCCAA-TGCCATCAAGGGCGACCACGTCCTACATGA-AACATGAAATTTGTCAATTTATATCTTCTCCTATCCCGTTTACTCTTTCACGTTGAATAAACTACAATATCTTACTAATCGCTTTCCTCATCGGTTTG-CATTTAGGGGAAAAACATCATCATCTGGCTAGTTAATTCTTTTGCTCGATGATCTCTCGTTAATCTCG-GGAGCCACACTTCCCCGGTAGGATCGCTTTACAGCAGATATATTTATATTCCTTACATATTCCTTGCCACCACGCGTAACAAAAACACATTCCGTGCCAGTCCACAGTTGTCCACAGTGTTGTTTACCTCAGCCAAAAACCTCAACCTTCACGCGAACAATCCACTCAATTAAGGCCAATGGAAGTAGGACGACGTACGACGGAATGTTGTTCACAGCAAGAGATTAGTTGTACCTTTCATAGAGCGTTTTAGAGTAGAAATTGTTTTGTTTTTTTTTTTGGTCGTGTGGTGTGTGATACATTTGCCGGTTGTGTGGGAAAGAAAACCCCGTTAACGCTATCGTGCTGGGGCGTTTCTAAAACGCTTGGTGTGTGTATGTTTGTCTAAGTGTATCTTGAATGGGGAGGGTGCTGTTTCAAGAAGGAAGAAATATTATAAAAAATCTAAATATAGCTAATTACATGAAAGTCAATGTGTTTCTTAAAGTCATGTTACAAGAAACGTGAACGAATACAATAAAACAAGCAAGCAAATAAGCAAACAAACAAACAAAACCCCAACAAAACAACGAAAAAAACGAAAGTTTCAAACAAAGTAATAGAGTCAATGCTTCTATAGGCGCATCCTACCAAACACAACACAAAACCCATTACTAACGCTCCTGTTCGTTCTACCCTTTTATCTTC]

[+] EMBL BX466244             [ATCCCCACGAGNGGCAAAATCGGAAACATAATCAGTGTTTTGGGAGGGGAAAATAAATAGGAAAACAAAACATTAAAAAAAAAAACAATTTCTAGCTTAAGCTTTTTGGCGTTTAAAGGCAACAAAAACGGAAAAACAGACAAAAAAAAATACAAAATCGGCTTAACAAAATCACTCGATAATCAGTAATAAATGCTCCTGGCGTTGTGCTCGCGATCGTATTGTGGCCACCCAGGGAAGACGGGCCATTTTCATCCATCCATCCATCAACACAAAACGGAGAAAGATATAGGGAAAGTAGGACCTTGTCTTACCGAACATCAAGAGCGACAGATGAGGGGCAACAAATCGAACAAAACGGAAAGACTTAATCTCAAAATGTCGAACTACCTTTACCCCTGGCGCGTTGCAAAACCATCCTCCCCGGAGGGGGGGATACGAAAGCAAGAAGAGAAATGTTTTCAATATATTACAACAAGGCAAATTGCAACGTTTGCCAAGGGCCATCAAGGGCGATCACGTCCTACATGACAACATGAAATTTGTCAATTTATATCTTCTCCTATCCCGTTTACTTTTTCACGTTTAATAAACTACAATATCTTACTAATCGCTTTCCTCATCGGTTTGCCATTTAGGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BX622114             [                                                                                                                                                                                                                                                                                                                                              TGAGGGGCAACAAATCGAACAAAACGGAAAGACTTAATCTCAAAATGTCGAACTACCTTTACCCCCGGCACGTTGCAAAACCATCCTCCCCGGAGGAGGGGATACGAAAGCAAGAAGAGAAAAGTTTTCAATATATTACAACAAGGCGAATTGCAACGTTTGCCAA TGCCATCAAGGGCGACCACGTCCTACATGA AACATGAAATTTGTCAATTTATATCTTCTCCTATCCCGTTTACTCTTTCACGTTGAATAAACTACAATATCTTACTAATCGCTTTCCTCATCGGTTTG CATTTAGGGGAAAAACATCATCATCTGGCTAGTTAATTCTTTTGCTCGATGATCTCTCGTTAATCTCG GGAGCCACACTTCCCCGGTAGGATCGCTTTACAGCAGATATATTTATATTCCTTACATATTCCTTGCCACCACGCGTAACAAAAACACATTCCGTGCCAGTCCACAGTTGTCCACAGTGTTGTTTACCTCAGCCAAAAACCTCAACCTTCACGCGAACAATCCACTCAATTAAGGCCAATGGAAGTAGGACGACGTACGACGGAATGTTGTTCACAGCAAGAGATTAGTTGTACCTTTCATAGAGCGTTTTAGAGTAGAAATTGTTT                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BX610939             [                                                                                                                                                                                                                                                                                                                                                                 CAAAACGGAAAGACTTAATCTCAAAATGTCGAACTACCTTTACCCCCGGCACGTTGCAAAACCATCCTCCCCGGAGGAGGGGATACGAAAGCAAGAAGAGAAAAGTTTTCAATATATTACAACAAGGCGAATTGCAACGTTTGCCAA TGCCATCAAGGGCGACCACGTCCTACATGA AACATGAAATTTGTCAATTTATATCTTCTCCTATCCCGTTTACTCTTTCACGTTGAATAAACTACAATATCTTACTAATCGCTTTCCTCATCGGTTTG CATTTAGGGGAAAAACATCATCATCTGGCTAGTTAATTCTTTTGCTCGATGATCTCTCGTTAATCTCG GGAGCCACACTTCCCCGGTAGGATCGCTTTACAGCAGATATATTTATATTCCTTACATATTCCTTGCCACCACGCGTAACAAAAACACATTCCGTGCCAGTCCACAGTTGTCCACAGTGTTGTTTACCTCAGCCAAAAACCTCAACCTTCACGCGAACAATCCACTCAATTAAGGCCAATGGAAGTAGGACGACGTACGACGGAATGTTGTTTACAGCAAGAGATTAGTTGTACCTTTCATAGAGCGTTTTAGAGTAGAAATTGTTTTGTTTTTTTTTTTGGTCG                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BX609236             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CTTTTGCTCGATGATCTCTCGTTAATCTCGAGGAGCCACACTTCCCCGGTAGGATCGCTTTACAGCAGATATATTTATATTCCTTACATATTCCTTGCCACCACGCGTAACAAAAACACATTCCGTGCCAGTCCACAGTTGTCCACAGTGTTGTTTACCTCAGCCAAAAACCTCAACCTTCACGCGAACAATCCACTCAATTAAGGCCAATGGAAGTAGGACGACGTACGACGGAATGTTGTTCACAGCAAGAGATTAGTTGTACCTTTCATAGAGCGTTTTAGAGTAGAAATTGTTTTGTTTTTTTTTTTGGTCGTGTGGTGTGTGATACATTTGCCGGTTGTGTGGGAAAGAAAACCCCGTTAACGCTATCGTGCTGGGGCGTTTCTAAAACGCTTGGTGTGTGTATGTTTGTCTAAGTGTATCTTGAATGGGGAGGGTGCTGTTTCAAGAAGGAAGAAATATTATAAAAAATCTAAATATAGCTAATTACATGAAAGTCAATGTGTTTCTTAAAGTCATGTTACAAGAAACGTGAACGAATACAATAAAACAAGCAAGCAAATAAGCAAACAAACAAACAAAACCCCAACAAAACAACGAAAAAAACGAAAGTTTCAAACAAAGTAATAGAGTCAATGCTTCTATAGGCGCATCCTACCAAACACAACACAAAACCCATTACTAACGCTCCTGTTCGTTCTACCCTTTTATCTTC]


>consensus_8138#1 ATCCCCACGAGNGGCAAAATCGGAAACATAATCAGTGTTTTGGGAGGGGAAAATAAATAG GAAAACAAAACATTAAAAAAAAAAACAATTTCTAGCTTAAGCTTTTTGGCGTTTAAAGGC AACAAAAACGGAAAAACAGACAAAAAAAAATACAAAATCGGCTTAACAAAATCACTCGAT AATCAGTAATAAATGCTCCTGGCGTTGTGCTCGCGATCGTATTGTGGCCACCCAGGGAAG ACGGGCCATTTTCATCCATCCATCCATCAACACAAAACGGAGAAAGATATAGGGAAAGTA GGACCTTGTCTTACCGAACATCAAGAGCGACAGATGAGGGGCAACAAATCGAACAAAACG GAAAGACTTAATCTCAAAATGTCGAACTACCTTTACCCCCGGCACGTTGCAAAACCATCC TCCCCGGAGGAGGGGATACGAAAGCAAGAAGAGAAAAGTTTTCAATATATTACAACAAGG CGAATTGCAACGTTTGCCAATGCCATCAAGGGCGACCACGTCCTACATGAAACATGAAAT TTGTCAATTTATATCTTCTCCTATCCCGTTTACTCTTTCACGTTGAATAAACTACAATAT CTTACTAATCGCTTTCCTCATCGGTTTGCATTTAGGGGAAAAACATCATCATCTGGCTAG TTAATTCTTTTGCTCGATGATCTCTCGTTAATCTCGGGAGCCACACTTCCCCGGTAGGAT CGCTTTACAGCAGATATATTTATATTCCTTACATATTCCTTGCCACCACGCGTAACAAAA ACACATTCCGTGCCAGTCCACAGTTGTCCACAGTGTTGTTTACCTCAGCCAAAAACCTCA ACCTTCACGCGAACAATCCACTCAATTAAGGCCAATGGAAGTAGGACGACGTACGACGGA ATGTTGTTCACAGCAAGAGATTAGTTGTACCTTTCATAGAGCGTTTTAGAGTAGAAATTG TTTTGTTTTTTTTTTTGGTCGTGTGGTGTGTGATACATTTGCCGGTTGTGTGGGAAAGAA AACCCCGTTAACGCTATCGTGCTGGGGCGTTTCTAAAACGCTTGGTGTGTGTATGTTTGT CTAAGTGTATCTTGAATGGGGAGGGTGCTGTTTCAAGAAGGAAGAAATATTATAAAAAAT CTAAATATAGCTAATTACATGAAAGTCAATGTGTTTCTTAAAGTCATGTTACAAGAAACG TGAACGAATACAATAAAACAAGCAAGCAAATAAGCAAACAAACAAACAAAACCCCAACAA AACAACGAAAAAAACGAAAGTTTCAAACAAAGTAATAGAGTCAATGCTTCTATAGGCGCA TCCTACCAAACACAACACAAAACCCATTACTAACGCTCCTGTTCGTTCTACCCTTTTATC TTC



consensusID : consensus_8138#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 620
fasta sequence
                              [ATACAGGAATCGAAAATATATGTATATGCTAAAAACAAACAAAAATGAGGAAACAATAATCAGTGTTTTGGGAGGGGAAAATAAATAGGAAAACAAAACATTAAAAAAAAAAACAATTTCTAGCTTAAGCTTTTTGGCGTTTAAAGGCAACAAAAACGAGGAAAAACAGACGAAAAAAATACAAAATCGACTTAACAAAATCACTCGATAATCAGTAATAAATGCTCCTGGCGTTGTGCTCGCGATCGTATTGTGGCCACCCAGGGAAGACGGGCCATTTTCATCCATCCATCCATCAACACAAAACGGAGAANGATATAGGGAAAGTAGGACCTTGGTCTTACCGAACATNAAGAGCGANAGATGAGGGNNANNAAATCGAACNAAACGGAAAGACTAATCTCANAATGTCAAACTACCTTTACCCCCGGNCACGTTGCNAAACCNTCCTCCCCNGGANGNNGGGGATACNANANGCAAGANNAGAAAAGGTTTTCAAATATATNACNANCAANNNCNGAATNGCCAACGGTTTGCCAANTGCCANNCNANNGGCNANCCACGTTCCTACATGAAACATGAAATTNGNCCAATTTATATCTTTCTCCTATCCCGTTTAA]

[+] EMBL BX624349             [ATACAGGAATCGAAAATATATGTATATGCTAAAAACAAACAAAAATGAGGAAACAATAATCAGTGTTTTGGGAGGGGAAAATAAATAGGAAAACAAAACATTAAAAAAAAAAACAATTTCTAGCTTAAGCTTTTTGGCGTTTAAAGGCAACAAAAACGAGGAAAAACAGACGAAAAAAATACAAAATCGACTTAACAAAATCACTCGATAATCAGTAATAAATGCTCCTGGCGTTGTGCTCGCGATCGTATTGTGGCCACCCAGGGAAGACGGGCCATTTTCATCCATCCATCCATCAACACAAAACGGAGAANGATATAGGGAAAGTAGGACCTTGGTCTTACCGAACATNAAGAGCGANAGATGAGGGNNANNAAATCGAACNAAACGGAAAGACTAATCTCANAATGTCAAACTACCTTTACCCCCGGNCACGTTGCNAAACCNTCCTCCCCNGGANGNNGGGGATACNANANGCAAGANNAGAAAAGGTTTTCAAATATATNACNANCAANNNCNGAATNGCCAACGGTTTGCCAANTGCCANNCNANNGGCNANCCACGTTCCTACATGAAACATGAAATTNGNCCAATTTATATCTTTCTCCTATCCCGTTTAA]


>consensus_8138#2 ATACAGGAATCGAAAATATATGTATATGCTAAAAACAAACAAAAATGAGGAAACAATAAT CAGTGTTTTGGGAGGGGAAAATAAATAGGAAAACAAAACATTAAAAAAAAAAACAATTTC TAGCTTAAGCTTTTTGGCGTTTAAAGGCAACAAAAACGAGGAAAAACAGACGAAAAAAAT ACAAAATCGACTTAACAAAATCACTCGATAATCAGTAATAAATGCTCCTGGCGTTGTGCT CGCGATCGTATTGTGGCCACCCAGGGAAGACGGGCCATTTTCATCCATCCATCCATCAAC ACAAAACGGAGAANGATATAGGGAAAGTAGGACCTTGGTCTTACCGAACATNAAGAGCGA NAGATGAGGGNNANNAAATCGAACNAAACGGAAAGACTAATCTCANAATGTCAAACTACC TTTACCCCCGGNCACGTTGCNAAACCNTCCTCCCCNGGANGNNGGGGATACNANANGCAA GANNAGAAAAGGTTTTCAAATATATNACNANCAANNNCNGAATNGCCAACGGTTTGCCAA NTGCCANNCNANNGGCNANCCACGTTCCTACATGAAACATGAAATTNGNCCAATTTATAT CTTTCTCCTATCCCGTTTAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8138#1      ------------------------------------------------------------
consensus_8138#2      ------------------------------------------------------------
consensus_8138#0      CCGATTTTAACGAAAACAATCAGTTGCTTTTTTAAATCATTTTATTCTTATGACGGTGGA 60
                                                                                  

consensus_8138#1      ------------------------------------------------------------
consensus_8138#2      ------------------------------------------------------------
consensus_8138#0      TTGAAGGCACTACTCGCGATTCTAGCGCGAGTTTCCGCTCTCAAGCAAGTGGATTTGGGT 120
                                                                                  

consensus_8138#1      ------------------------------------------------------------
consensus_8138#2      ------------------------------------------------------------
consensus_8138#0      TATTTTTTTTATTTTTTAACGGAATGGAACAATCGAAAAGACGAACGGAACGAGAACAGC 180
                                                                                  

consensus_8138#1      ------------------------------------------------------------
consensus_8138#2      ------------------------------------------------------------
consensus_8138#0      AAAAGAAAAACCCAAACCTTTTTACATACCGGACACAAATTGACTGCTGCTACGTCACTG 240
                                                                                  

consensus_8138#1      -----------------------------------ATCCCCACGAGNGGCAAAATCG--G 23
consensus_8138#2      ----------ATACAGGAATCGAAAATATATGTATATGCTAAAAACAAACAAAAATGAGG 50
consensus_8138#0      TTACCGGCTGCTTACCGTTGAGTACACCAGCTGGGGTCGCGCTATTTGGCCGCAGTACAG 300
                                                          *            *   *     *

consensus_8138#1      AAACA-TAAT-CAGTGTTTTGGGAGGGGAAAATAAATAGGAAAACAAAACATTAAAAAAA 81
consensus_8138#2      AAACAATAAT-CAGTGTTTTGGGAGGGGAAAATAAATAGGAAAACAAAACATTAAAAAAA 109
consensus_8138#0      TTACCGCAATACATCACATTTATAGAG----ATATATATATAAACAATGTATAAATATTT 356
                        **   *** **     **   ** *    *** ***   ******   ** ** *   

consensus_8138#1      AAAACAAT-TTCTAGCTTAAGCTTTTTGGCGTTTAAAGGCAACAAAAAC--GGAAAAACA 138
consensus_8138#2      AAAACAAT-TTCTAGCTTAAGCTTTTTGGCGTTTAAAGGCAACAAAAACGAGGAAAAACA 168
consensus_8138#0      ACAATGGTGCTGCTGCTGATGCCTCTCAGCTTCT---TGTTGCTAAAAT--GGAGCCCCT 411
                      * **   *  *   *** * ** * *  ** * *    *   * ****   ***    * 

consensus_8138#1      GACAAAAAAAAATACAAAATCG----GCTTAACAAAATCACTCGAT-AATCAGTAATAAA 193
consensus_8138#2      GACGAAAAAAA-TACAAAATCG----ACTTAACAAAATCACTCGAT-AATCAGTAATAAA 222
consensus_8138#0      GTTATAATGCAGTGGGAAACTGCCACGCATTTGGAGAGGGGACAATGAATGAGGAAGAAA 471
                      *    **   * *   ***  *     * *    * *     * ** *** ** ** ***

consensus_8138#1      TGCTCCTGGCGTTGTGC----TCGCGATCGTATTGTGGCCACCCAGGGAAGACGGGCCAT 249
consensus_8138#2      TGCTCCTGGCGTTGTGC----TCGCGATCGTATTGTGGCCACCCAGGGAAGACGGGCCAT 278
consensus_8138#0      AGTTCTATATATTTTTTCAAATCGTGACCGTTAT-TAACGCACTATAGCAGACAGTTTTG 530
                       * **      ** *      *** ** ***  * *  *   * *  * **** *     

consensus_8138#1      TTTCATCC--------ATCCATCCATCAACACAAAACGGAGAAAGATATAGGGAAAGTAG 301
consensus_8138#2      TTTCATCC--------ATCCATCCATCAACACAAAACGGAGAANGATATAGGGAAAGTAG 330
consensus_8138#0      CCCGATGCGGATAGAGATGTATAGCTTGATAATGAACAGAAAAAAACACACACACATTTT 590
                          ** *        **  **   *  * *   *** ** **  * * *   * * *  

consensus_8138#1      GACC------TTG-TCTTACCGAACATCAAGAGCGACAGATGAGGGGCAACAAATCGAAC 354
consensus_8138#2      GACC------TTGGTCTTACCGAACATNAAGAGCGANAGATGAGGGNNANNAAATCGAAC 384
consensus_8138#0      AAACGCTAGATTAAATACGTAGAACCGCGACAAGACAAGATAAGGTAGGGAGGAATTGAC 650
                       * *      **         ****    * *     **** ***        *    **

consensus_8138#1      AAAACG------GAAAGACTTAATCTCAAAATGTCGAACTACCTTTACCCCCGGC-ACGT 407
consensus_8138#2      NAAACG------GAAAGACT-AATCTCANAATGTCAAACTACCTTTACCCCCGGNCACGT 437
consensus_8138#0      GAAGCGAGGTAGGATAAACAAACAAACAAACAAACGAAAAAATCGCCCACGCGTACAGGA 710
                       ** **      ** * **  *    ** *    * **  *      * * **   * * 

consensus_8138#1      TGCAAAACCATCCTCCCCGG--AGGAGGGGATACGAAAG-CAAGAAGAGAAAAG--TTTT 462
consensus_8138#2      TGCNAAACCNTCCTCCCCNGGANGNNGGGGATACNANANGCAAGANNAGAAAAGGTTTTC 497
consensus_8138#0      ATCGAAAATATATGTATATGCTAAAAACAAACAAAAATGAGGAAACAATAATCAGTGTTT 770
                        * ***   *        *          * *  *      * *  * **      ** 

consensus_8138#1      CAATATATTACAAC---AAGG----CGAATTGC-AACG-TTTGCCAAT-GCCATC---AA 509
consensus_8138#2      AAATATATNACNANCAANNNC----NGAATNGCCAACGGTTTGCCAANTGCCANNCNANN 553
consensus_8138#0      TGGGAGGGGAAAATAAATAGGGAAACAAAACATTAAAAAAAAAACAATTTCTAGCTTAAG 830
                          *    *  *              **     **        ***   * *       

consensus_8138#1      G-----GGCGACCACGT----CCTACATGAAACATGAAATTTGTC-AATTTATATCTT-C 558
consensus_8138#2      G-----GCNANCCACGTT---CCTACATGAAACATGAAATTNGNCCAATTTATATCTTTC 605
consensus_8138#0      CTTTTTGGCGTTTAAAGGCAACAAAAACGAGGAAAAACAGACGAAAAAAATACAAAATCG 890
                            *      *       *  * * **   *  * *   *   **  ** *   *  

consensus_8138#1      TCCTATCCCGTTTACTCTTTCACGTTGAATAAACTACAATATCTTACTAATCGCTTTCCT 618
consensus_8138#2      TCCTATCCCGTTTAA--------------------------------------------- 620
consensus_8138#0      ACTTAACAAAATCACTCGATAATCAGTAATAAATGCTCCTGGCGTTGTGCTCGCGATCGT 950
                       * ** *    * *                                              

consensus_8138#1      CATCGGTTTGCATTTAGGGGAAAAA---CATCATCATCTGGCTAGTTAATTCTTTTGCTC 675
consensus_8138#2      ------------------------------------------------------------
consensus_8138#0      ATT--GTGGCCACCCAGGGAAGACGGGCCATTTTCATCCATCCATCCATCAACACAAAAC 1008
                                                                                  

consensus_8138#1      GATGATCTCT-CGTTAATCTCGGGAGCCACACTTCCC---CGGTAGGATCGCTTTACAGC 731
consensus_8138#2      ------------------------------------------------------------
consensus_8138#0      GGAGAAAAATATAGGGAAAGTAGGACCTTGTCTTACCGAACATTAAGAGCGAGAGATGAG 1068
                                                                                  

consensus_8138#1      AG---ATATATTTA-TATTCCTTACATATTCCTTGCCACCACGCGTAACAAAAACACATT 787
consensus_8138#2      ------------------------------------------------------------
consensus_8138#0      GGGCAACAAATCGAACAAAACGGAAAGACTTAATCTCAAAATGTCGAACTACCTTTACCC 1128
                                                                                  

consensus_8138#1      CCGTGCCAGTCCACAGTTGTCCAC-----AGTGTTGTTTACCTCAGCCAAAAACCTCAAC 842
consensus_8138#2      ------------------------------------------------------------
consensus_8138#0      CCGGCACGTTGCAAAACCATCCTCCCCGGAGGAGGGGATACGAAAGCAAGAAGAGAAAAG 1188
                                                                                  

consensus_8138#1      CTTCACGCGAA---CAATCCACTCAATTAAG------GCCAATGGAAGTAGGACGACGTA 893
consensus_8138#2      ------------------------------------------------------------
consensus_8138#0      TTTTCAATATATTACAACAAGGCGAATTGCAACGTTTGCCAATGGAAGTAGGACGACGTA 1248
                                                                                  

consensus_8138#1      CGACGGAATGTTGTTCACAGCAAGAGATTAGTTGTACCTTTCATAGAGCGTTTTAGAGTA 953
consensus_8138#2      ------------------------------------------------------------
consensus_8138#0      CGACGGAATGTTGTTCACAGCAAGAGATTAGTTGTACCTTTCATAGAGCGTTTTAGAGTA 1308
                                                                                  

consensus_8138#1      GAAATTGTTTTGTTTTTTTTTTTGGTCGTGTGGTGTGTGATACATTTGCCGGTTGTGTGG 1013
consensus_8138#2      ------------------------------------------------------------
consensus_8138#0      GAAATTGTTTTGTTTTTTTTTTTGGTCGTGTGGTGTGTGATACATTTGCCGGTTGTGTGG 1368
                                                                                  

consensus_8138#1      GAAAGAAAACCCCGTTAACGCTATCGTGCTGGGGCGTTTCTAAAACGCTTGGTGTGTGTA 1073
consensus_8138#2      ------------------------------------------------------------
consensus_8138#0      GAAAGAAAACCCCGTTAACGCTATCGTGCTGGGGCGTTTCTAAAACGCTTGGTGTGTGTA 1428
                                                                                  

consensus_8138#1      TGTTTGTCTAAGTGTATCTTGAATGGGGAGGGTGCTGTTTCAAGAAGGAAGAAATATTAT 1133
consensus_8138#2      ------------------------------------------------------------
consensus_8138#0      TGTTTGTCTAAGTGTATCTTGAATGGGGAGGGTGCTGTTTCAAGAAGGAAGAAATATTAT 1488
                                                                                  

consensus_8138#1      AAAAAATCTAAATATAGCTAATTACATGAAAGTCAATGTGTTTCTTAAAGTCATGTTACA 1193
consensus_8138#2      ------------------------------------------------------------
consensus_8138#0      AAAAAATCTAAATATAGCTAATTACATGAAAGTCAATGTGTTTCTTAAAGTCATGTTAC- 1547
                                                                                  

consensus_8138#1      AGAAACGTGAACGAATACAATAAAACAAGCAAGCAAATAAGCAAACAAACAAACAAAACC 1253
consensus_8138#2      ------------------------------------------------------------
consensus_8138#0      ------------------------------------------------------------
                                                                                  

consensus_8138#1      CCAACAAAACAACGAAAAAAACGAAAGTTTCAAACAAAGTAATAGAGTCAATGCTTCTAT 1313
consensus_8138#2      ------------------------------------------------------------
consensus_8138#0      ------------------------------------------------------------
                                                                                  

consensus_8138#1      AGGCGCATCCTACCAAACACAACACAAAACCCATTACTAACGCTCCTGTTCGTTCTACCC 1373
consensus_8138#2      ------------------------------------------------------------
consensus_8138#0      ------------------------------------------------------------
                                                                                  

consensus_8138#1      TTTTATCTTC 1383
consensus_8138#2      ----------
consensus_8138#0      ----------
                                




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)