These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8140#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 898 fasta sequence [CCAAGAATCGGCACGAGGTTATCCTACTCTCACTGGTCAGCTTATTCATTATATTGTTTTCAAAGCTTAGGGCATTTGGGTTATGGCTGGTTTGGAGATTTTGGTGGGAACGTACGAAGAGTTTATCGTATGTTACCGTGCGGAACCCTTACGAACGGACCCGGAGAAGCTATATCTTAAGGAATCGTTTGCTGCTCATCTGCACACCTCGTCTGTGCGATCGGTAGCTTCCCACGGCAGATATGTAGCTACTGGCGGAGCTGATGATCGAATCTGCCTGTTGGACATGCGAGAGGGAACGAAGGTGACGGAGTTCCTGCATCACGATGGAACGATAAACGCACTTGTTTTCTCGGATGATGGGAGCCACCTTTTCTCCGGTAGCAACGACGGTAGTATGACGGCGATCAATATGTCCAAATTAGCCGTCGATAAGACGTGGAAAAGCGCCCACAAAACTGCTGTACAAAGTATCTCCATTCACCCTCATGGTAAGATGGCACTTTCATTGGGCAGCGATATGACGCTTAAAACATGGGATCTAATAACGGGTCGTGCTCTGTTCACGACTGCGTTGAACAANAATAGCAAGTATGGACGAGTGCTTGCCCGACGGTACAGTGGTCCTCCGGATGGAGAACATTTCGCACTCCCTCGGTAACCCGGGTGGGTTGATATCATCCAGTATCCGAGAACAACGCGTTCCGTNAGGTTGGCTTAGGAGTTATTGGACTTCCGAAAGCCNTNAACCGGCCCATGGTTGGTTAGGGTAGATCCGGGCTTGAAAGNACAATTTTGCGCGGTTGGGTCTCGGGACGCCAATGGGAGCTCTTANGTTAATTGGGCCANGATCCACGAGAGAGGGANCCGGAGNAAAAGGCTGGGANANTCTACCGAT] [+] EMBL BX468437 [CCAAGAATCGGCACGAGGTTATCCTACTCTCACTGGTCAGCTTATTCATTATATTGTTTTCAAAGCTTAGGGCATTTGGGTTATGGCTGGTTTGGAGATTTTGGTGGGAACGTACGAAGAGTTTATCGTATGTTACCGTGCGGAACCCTTACGAACGGACCCGGAGAAGCTATATCTTAAGGAATCGTTTGCTGCTCATCTGCACACCTCGTCTGTGCGATCGGTAGCTTCCCACGGCAGATATGTAGCTACTGGCGGAGCTGATGATCGAATCTGCCTGTTGGACATGCGAGAGGGAACGAAGGTGACGGAGTTCCTGCATCACGATGGAACGATAAACGCACTTGTTTTCTCGGATGATGGGAGCCACCTTTTCTCCGGTAGCAACGACGGTAGTATGACGGCGATCAATATGTCCAAATTAGCCGTCGATAAGACGTGGAAAAGCGCCCACAAAACTGCTGTACAAAGTATCTCCATTCACCCTCATGGTAAGATGGCACTTTCATTGGGCAGCGATATGACGCTTAAAACATGGGATCTAATAACGGGTCGTGCTCTGTTCACGACTGCGTTGAACAANAATAGCAAGTATGGACGAGTGCTTGCCCGACGGTACAGTGGTCCTCCGGATGGAGAACATTTCGCACTCCCTCGGTAACCCGGGTGGGTTGATATCATCCAGTATCCGAGAACAACGCGTTCCGTNAGGTTGGCTTAGGAGTTATTGGACTTCCGAAAGCCNTNAACCGGCCCATGGTTGGTTAGGGTAGATCCGGGCTTGAAAGNACAATTTTGCGCGGTTGGGTCTCGGGACGCCAATGGGAGCTCTTANGTTAATTGGGCCANGATCCACGAGAGAGGGANCCGGAGNAAAAGGCTGGGANANTCTACCGAT] consensusID : consensus_8140#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 876 fasta sequence [CCGCCCACGCGTCCGCACAATAAATGTAAAAACGCTCGTTTTTCTATTTACGCTATAGTTAAACTTAAAATACTTGTTCGGTCAAAGCAATTTATCCTACTCCCACTGTCAGTTATTCATTATATTGTTTTCAAAGCTTAGGGCATTTGGGTTATGGCTGGTTTGGAGATTTTGGTGGGAACGTACGAAGAGTTTATCGTATGTTACCGTGCGGAACCCTTACGAACGGACCCGGAGAAGCTATATCTTAAGGAATCGTTTGCTGCTCATCTGCACACCTCGTCTGTGCGATCGGTAGCTTCCCACGGCAGATATGTAGCTACTGGCGGAGCTGATGATCGAATCTGCCTGCTGGACATGCGAGAGGGAACGAAGGTAACGGAGTTCCTGCATCACGATGGGACGATCAACGCACTTGTTTTCTCGGATGATGGCAGCCACCTCTTCTCCGGTAGCAATGACGGTAGTATGACGGCGATCAATATGTCCAAATTGGCCGTCGATAAGACGTGGAAAAGC-GCCCACAAAACTGCTGTACAAAGTATCTCCATTCACCCTCATGGTAAGATGGCACTTTCATTGGGCAGCGATATGACGCTAAAAACATGGGATCT-AAT-AACGGGTCGTGCTCTGTTCACGACTGCGTTGAACAAAAATAGCAAGTATGGACGAGTGCTTGCCGACGTACAGTGGTCTCCGGATGGAGAACATTTCGCACTCCTCGGTAACCGGGTGGTTGATATCATCAGTATCGAGACAACGCGTTCCGTTAGGTTGCTGGAGTATGATTCTAAACCTAGCGCCATGTGTTGGTTATCGGCTGAAGAAATTGCGGTTGGTTTGGAGAATGGAGCTCTAGTAATGGCCAACATCCAC] [+] EMBL BM601026 [CCGCCCACGCGTCCGCACAATAAATGTAAAAACGCTCGTTTTTCTATTTACGCTATAGTTAAACTTAAAATACTTGTTCGGTCAAAGCAATTTATCCTACTCCCACTGTCAGTTATTCATTATATTGTTTTCAAAGCTTAGGGCATTTGGGTTATGGCTGGTTTGGAGATTTTGGTGGGAACGTACGAAGAGTTTATCGTATGTTACCGTGCGGAACCCTTACGAACGGACCCGGAGAAGCTATATCTTAAGGAATCGTTTGCTGCTCATCTGCACACCTCGTCTGTGCGATCGGTAGCTTCCCACGGCAGATATGTAGCTACTGGCGGAGCTGATGATCGAATCTGCCTGCTGGACATGCGAGAGGGAACGAAGGTAACGGAGTTCCTGCATCACGATGGGACGATCAACGCACTTGTTTTCTCGGATGATGGCAGCCACCTCTTCTCCGGTAGCAATGACGGTAGTATGACGGCGATCAATATGTCCAAATTGGCCGTCGATAAGACGTGGAAAAGC GCCCACAAAACTGC ] [+] EMBL BX625163 [ tgTTTACGCTACAGTTAAACTTAAAATATTTGTTCGTCCAAAGCAATTTATCCCACTCCCACTGTCAGTTATTCATTATATTGTTTTCAAAGCTTAGGGCATTTGAGTTATGGCTGGTTTGGAGATTTTGGTGGGAACGTACGAAGAGTTTATCGTATGTTACCGTGCGGAACCCTTACGAACGGACCCGGAGAAGCTATACCTTAAGGAATCGTTTGCTGCTCATCTGCACACCTCGTCTGTGCGATCGGTAGCTTCCCACGGCAGATATGTAGCTACTGGCGGAGCTGATGATCGAATCTGCCTGCTGGACATGCGAGAGGGAACGAAGGTAACGGAGTTCCTGCATCACGATGGGACGATCAACGCACTTGTTTTCTCGGATGATGGCAGCCACCTCTTCTCCGGTAGCAACGACGGTAGTATGACGGCGATCAATATGTCCAAATTGGCCGTCGATAAGACGTGGAAAAGC GCCCACAAAACTGCTGTACAAAGTATCTCCATTCACCCTCACGGTAAGATGGCACTTTCATTGGGCAGCGATATGACGCTAAAAACATGGGATCT AAT AACGGGTCGTGCTCTGTTCACGACTGCGTTGAACAAAAATAGCAAGTATGGACGAGTGCTTGCCGACGTACAGTGGTCTCCGGATGGAGAACA ] [+] EMBL CNS09J6Z [ ACGCTATAGTTAAACTTAAAATACTTGTTCGGTCAAAGCAATTTATCCTACTCCCACTGTCAGTTATTCATTATATTGTTTTCAAAGCTTAGGGCATTTGGGTTATGGCTGGTTTGGAGATTTTGGTGGGAACGTACGAAGAGTTTATCGTATGTTACCGTGCGGAACCCTTACGAACGGACCCGGAGAAGCTATATCTTAAGGAATCGTTTGCTGCTCATCTGCACACCTCGTCTGTGCGATCGGTAGCTTCCCACGGCAGATATGTAGCTACTGGCGGAG TGATGATCGAATCTGCCTGCTGGACATGCGAGAGGGAACGAAGGTAACGGAGTTCCTGCATCACGATGGGACGATCAACGCACTTGTTTTCTCGGATGATGGCAGCCACCTCTTCTCCGGTAGCAATGACGGTAGTATGACGGCGATCAATATGTCCAAATTGGCCGTCGATAAGACGTGGAAAAGC GCCCACAAAACTGCTGTACAAAGTATCTCCATTCACCCTCATGGTAAGATGGCACTTTCATTGGGCAGCGATATGACGCTAAAAACATGGGATCT AATAAACGGGTCGTGCTCTGTTCACGACTGCGTTGAAC ] [+] EMBL BX606278 [ AATTTATCCCACTCCCACTGTCAGTTATTCATTATATTGTTTTCAAAGCTTAGGGCATTTGAGTTATGGCTGGTTTGGAGATTTTGGTGGGAACGTACGAAGAGTTTATCGTATGTTACCGTGCGGAACCCTTACGAACGGACCCGGAGAAGCTATACCTTAAGGAATCGTTTGCTGCTCATCTGCACACCTCGTCTGTGCGATCGGTAGCTTCCCACGGCAGATATGTAGCTACTGGCGGAGCTGATGATCGAATCTGCCTGCTGGACATGCGAGAGGGAACGAAGGTAACGGAGTTCCTGCATCACGATGGGACGATCAACGCACTTGTTTTCTCGGATGATGGCAGCCACCTCTTCTCCGGTAGCAACGACGGTAGTATGACGGCGATCAATATGTCCAAATTGGCCGTCGATAAGACGTGGAAAAGC GCCCACAAAACTGCTGTACAAAGTATCTCCATTCACCCTCACGGTAAGATGGCACTTTCATTGGGCAGCGATATGACGCTAAAAACATGGGATCT AAT AACGGGTCGTGCTCTGTTCACGACTGCGTTGAACAAAAATAGCAAGTATGGACGAGTGCTTGCCGACGTACAGTGGTCTCCGGATGGAGAACATTTCGCACTCCTCGGTAACCGGGTGGTTGATATCATCAGTATCGAGACAACGCGTTCCGTTAGGTTGCTGGAGTATGATTCTAAACCTAGCGCCATGTGTTGGTTATCGGCTGAAGAAATTGCGGTTGGTTTGGAGAATGGAGCTCTAGTAATGGCCAACATCCAC] [+] EMBL BM606181 [ TATTCATTATATTGTTTTCAAAGCTTAGGGCATTTGGGTTATGGCTGGTTTGGAGATTTTGGTGGGAACGTACGAAGAGTTTATCGTATGTTACCGTGCGGAACCCTTACGAACGGACCCGGAGAAGCTATATCTTAAGGAATCGGTTGCTGCTCATCTGCACACCTCGTCTGTGCGATCGGTAGCTTCCCACGGCAGATATGTAGCTACTGGCGGAGCTGATGATCGAATCTGCCTGCTGGACATGCGAGAGGGAACGAAGGTAACGGAGTTCCTGCATCACGATGGGACGATCAACGCACTTGTTTTCTCGGATGATGGCAGCCACCTCTTCTCCGGTAGCAATGACGGTAGTATGACGGCGATCAATATGTCCAAATTGGCCGTCGATAAGACGTGGAAAAGC GCCCACAAAACTGCTGTACAAAGTATCTCCATTCACCCTCATGGTAAGATGGCACTTTCATTGGGC ] [+] EMBL CNS08N6M [ TAAGGAATCGTTTGCTGCTCATCTGCACACCTCGTCTGTGCGATCGGTAGCTTCCCACGGCAGATATGTAGCTACTGGCGGA CTGATGATCGAATCTGCCTGCTGGACATGCGAGAGGGAACGAAGGTAACGGAGTTCCTGCATCACGATGGGACGATCAACGCACTTGTTTTCTCGGATGATGGCAGCCACCTCTTCTCCGGTAGCAATGACGGTAGTATGACGGCGATCAATATGTCCAAATTGGCCGTCGATAAGACGTGGAAAATCTGCCCACAAAACTGCTGTACAAAGTATCTCCATTCACCCTCATGGTAAGATGGCACTTTCATTGGGCAGCGATATGACGCTAAAAACATGGGATCTAAAT AACGGGTCGTGCTCTGTTCACGACTGCGTTGAACAAAAATAGCAAGTATGGACGAGTGCTTGCCGACGTACAGTGGTCTCCGGATGGAGAACATTTCGCACTCCTCGGTAACCGGGTGGTTGATATCATCAGTATCGAGACAACGCGTTCCGTTAGGTTGCT ] [+] EMBL CNS09437 [ GCCCACAAAACTGCTGTACAAAGTATCTCCATTCACCCTCATGGTAAGATGGCACTTTCATTGGGCAGCGATATGACGCTAAAAACATGGGATCT AAT AACGGGTCGTGCTCTGTTCACGACTGCGTTGAACAAA ] consensusID : consensus_8140#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence [CTCAGCCAGAATCNCCCACGAGGTGTAAAACGCACGTTTTTCTGTTTACGCTACAGTTAAACTTAAAATATTTGTTCGTCCAAAGCAATTTATCCGTACTCTCACTGTCAGTTATTCATTATATTGTTTTCAAAGCTTAGGGCATTTGGGTTATGGCTGGTTTGGAGATTTTGGTGGGAACGTACGAAGAGTTTATCGTATGTTACCGTGCGGAACCCTTACGAACGGACCCGGAGAAGCTATATCTTAAGGAATCGTTTGCTGCTCATCTGCACACCTCGTCTGTGCGATCGGTAGCTTCCCACGGCAGATATGTAGCTACTGGCGGCGGCTGATGATCGAATCTGCCTGTTGGACATGCGAGAGGGAACGAAGGTAGACGGAGTTCCTGCATCACGAGTGGAACGATGAACGCACTTGTTGTTCTCGGATGATGGGAGCCACCGTTTTCGTCCGGTAGCAACGACGGTGTAGTGACGGCGATCAAATATGTCCAAATANA] [+] EMBL BX466549 [CTCAGCCAGAATCNCCCACGAGGTGTAAAACGCACGTTTTTCTGTTTACGCTACAGTTAAACTTAAAATATTTGTTCGTCCAAAGCAATTTATCCGTACTCTCACTGTCAGTTATTCATTATATTGTTTTCAAAGCTTAGGGCATTTGGGTTATGGCTGGTTTGGAGATTTTGGTGGGAACGTACGAAGAGTTTATCGTATGTTACCGTGCGGAACCCTTACGAACGGACCCGGAGAAGCTATATCTTAAGGAATCGTTTGCTGCTCATCTGCACACCTCGTCTGTGCGATCGGTAGCTTCCCACGGCAGATATGTAGCTACTGGCGGCGGCTGATGATCGAATCTGCCTGTTGGACATGCGAGAGGGAACGAAGGTAGACGGAGTTCCTGCATCACGAGTGGAACGATGAACGCACTTGTTGTTCTCGGATGATGGGAGCCACCGTTTTCGTCCGGTAGCAACGACGGTGTAGTGACGGCGATCAAATATGTCCAAATANA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8140#1 CCGCCCACGCGTCCGCACAATAAATGTAAAAACGCTCGTTTTTCTATTTACGCTATAGTT 60 consensus_8140#2 -CTCAGCCAGAATCNCCCACGAGGTGTAAAA-CGCACGTTTTTCTGTTTACGCTACAGTT 58 consensus_8140#0 ------------------------------------------------------------ consensus_8140#1 AAACTTAAAATACTTGTTCGGTCAAAGCAATTTATCC-TACTCCCACTG-TCAG-TTATT 117 consensus_8140#2 AAACTTAAAATATTTGTTCGTCCAAAGCAATTTATCCGTACTCTCACTG-TCAG-TTATT 116 consensus_8140#0 -------------CCAAGAATCGGCACGAGGTTATCC-TACTCTCACTGGTCAGCTTATT 46 * * ****** ***** ***** **** ***** consensus_8140#1 CATTATATTGTTTTCAAAGCTTAGGGCATTTGGGTTATGGCTGGTTTGGAGATTTTGGTG 177 consensus_8140#2 CATTATATTGTTTTCAAAGCTTAGGGCATTTGGGTTATGGCTGGTTTGGAGATTTTGGTG 176 consensus_8140#0 CATTATATTGTTTTCAAAGCTTAGGGCATTTGGGTTATGGCTGGTTTGGAGATTTTGGTG 106 ************************************************************ consensus_8140#1 GGAACGTACGAAGAGTTTATCGTATGTTACCGTGCGGAACCCTTACGAACGGACCCGGAG 237 consensus_8140#2 GGAACGTACGAAGAGTTTATCGTATGTTACCGTGCGGAACCCTTACGAACGGACCCGGAG 236 consensus_8140#0 GGAACGTACGAAGAGTTTATCGTATGTTACCGTGCGGAACCCTTACGAACGGACCCGGAG 166 ************************************************************ consensus_8140#1 AAGCTATATCTTAAGGAATCGTTTGCTGCTCATCTGCACACCTCGTCTGTGCGATCGGTA 297 consensus_8140#2 AAGCTATATCTTAAGGAATCGTTTGCTGCTCATCTGCACACCTCGTCTGTGCGATCGGTA 296 consensus_8140#0 AAGCTATATCTTAAGGAATCGTTTGCTGCTCATCTGCACACCTCGTCTGTGCGATCGGTA 226 ************************************************************ consensus_8140#1 GCTTCCCACGGCAGATATGTAGCTACTGGCGG-AGCTGATGATCGAATCTGCCTGCTGGA 356 consensus_8140#2 GCTTCCCACGGCAGATATGTAGCTACTGGCGGCGGCTGATGATCGAATCTGCCTGTTGGA 356 consensus_8140#0 GCTTCCCACGGCAGATATGTAGCTACTGGCGG-AGCTGATGATCGAATCTGCCTGTTGGA 285 ******************************** ********************* **** consensus_8140#1 CATGCGAGAGGGAACGAAGGTA-ACGGAGTTCCTGCATCACGA-TGGGACGATCAACGCA 414 consensus_8140#2 CATGCGAGAGGGAACGAAGGTAGACGGAGTTCCTGCATCACGAGTGGAACGATGAACGCA 416 consensus_8140#0 CATGCGAGAGGGAACGAAGGTG-ACGGAGTTCCTGCATCACGA-TGGAACGATAAACGCA 343 ********************* ******************** *** ***** ****** consensus_8140#1 CTTGTT-TTCTCGGATGATGGCAGCCACCTCTTC--TCCGGTAGCAATGACGGTAGTATG 471 consensus_8140#2 CTTGTTGTTCTCGGATGATGGGAGCCACCGTTTTCGTCCGGTAGCAACGACGGTGTAGTG 476 consensus_8140#0 CTTGTT-TTCTCGGATGATGGGAGCCACCTTTTC--TCCGGTAGCAACGACGGTAGTATG 400 ****** ************** ******* ** *********** ****** ** consensus_8140#1 ACGGCGATCAA-TATGTCCAAATTGGCCGTCGATAAGACGTGGAAAAGCGCCCACAAAAC 530 consensus_8140#2 ACGGCGATCAAATATGTCCAAATANA---------------------------------- 502 consensus_8140#0 ACGGCGATCAA-TATGTCCAAATTAGCCGTCGATAAGACGTGGAAAAGCGCCCACAAAAC 459 *********** *********** consensus_8140#1 TGCTGTACAAAGTATCTCCATTCACCCTCATGGTAAGATGGCACTTTCATTGGGCAGCGA 590 consensus_8140#2 ------------------------------------------------------------ consensus_8140#0 TGCTGTACAAAGTATCTCCATTCACCCTCATGGTAAGATGGCACTTTCATTGGGCAGCGA 519 consensus_8140#1 TATGACGCTAAAAACATGGGATCTAATAACGGGTCGTGCTCTGTTCACGACTGCGTTGAA 650 consensus_8140#2 ------------------------------------------------------------ consensus_8140#0 TATGACGCTTAAAACATGGGATCTAATAACGGGTCGTGCTCTGTTCACGACTGCGTTGAA 579 consensus_8140#1 CAAAAATAGCAAGTATGGACGAGTGCTTGCCGAC--GTACAGTGGTC-TCCGGATGGAGA 707 consensus_8140#2 ------------------------------------------------------------ consensus_8140#0 CAANAATAGCAAGTATGGACGAGTGCTTGCCCGACGGTACAGTGGTCCTCCGGATGGAGA 639 consensus_8140#1 ACATTTCGCACTCC-TCGGTAACCGGGT--GGTTGATATCATC-AGTATC--GAGACAAC 761 consensus_8140#2 ------------------------------------------------------------ consensus_8140#0 ACATTTCGCACTCCCTCGGTAACCCGGGTGGGTTGATATCATCCAGTATCCGAGAACAAC 699 consensus_8140#1 GCGTTCCGTTAGGTTG-CTGGAGTATGATTCTAAA-CCTAGCGCCATGTGTTGGTTATCG 819 consensus_8140#2 ------------------------------------------------------------ consensus_8140#0 GCGTTCCGTNAGGTTGGCTTAGGAGTTATTGGACTTCCGAAAGCCNTNAACCGGCCCATG 759 consensus_8140#1 GCTGAAGAAATTGCGGTTGGTTTGGAGAATGGAGCTCTA-GTAATGGCCAACATCCAC-- 876 consensus_8140#2 ------------------------------------------------------------ consensus_8140#0 GTTGGTTAGGGTAGATCCGGGCTTGAAAGNACAATTTTGCGCGGTTGGGTCTCGGGACGC 819 consensus_8140#1 ------------------------------------------------------------ consensus_8140#2 ------------------------------------------------------------ consensus_8140#0 CAATGGGAGCTCTTANGTTAATTGGGCCANGATCCACGAGAGAGGGANCCGGAGNAAAAG 879 consensus_8140#1 ------------------- consensus_8140#2 ------------------- consensus_8140#0 GCTGGGANANTCTACCGAT 898 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||