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Anopheles gambiae
cluster # 8147 cluster # 8147       Sequences # 9       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8147#0 length = 1476 sequences # 6  
consensus_8147#1 length = 700 sequences # 1  
consensus_8147#2 length = 662 sequences # 1  
consensus_8147#3 length = 629 sequences # 1  

consensusID : consensus_8147#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1476
fasta sequence
                              [GATTGCTGGTTTATGACGCTCCGCTTAAGTAGCATCTCTATCTCGGAAGTCAACAATGTACTCTAACAATTTGGTCCCTCCTTCCCTTCCTTAGTTTATTGCCGGTGATCACATCACGGAGTTGTCACTGGCACGCGAAATCGACCACGCCCGCAAGACGCAAAACAACTCGGAGGGAATCGCCTTCCCAACGAGCGTCGCCTACGGTGTACACTCCAGCATGCCCAACTATACACCCTCGAACCGTACGAATATCGAGCTGTCGGAGGGTATGGTGCTGATCGATTCTGGTGGCCAATACGAGGACGGTACGACGGAAGTGTCCCGTACGCTTCATCTCGGTGAACCGACAGCGGAACAAATCCGGGCCTATACGAACGTGCTGATCGGTATGATACGATTGTCCATGCTGACGTTCCCGGAAAATCTCAAACCTGCTGAACTGGATGCACTGGCCCGTGGACCAGTCTGGGGCTCGATGAACGACTATCCGCACGGGACCGGTCATGGTATCGGATCTTACTCGTCTGTTCGGGAATCTCCTATCAGCATTTCCTACACGGCCAAACAGAGGTTTACCTTCAAGGAGGGATACTTTTTCTCGAATGAACCTGGTTACTATAAAAATGGTGCCTTCGGCATTCGACTCGAGAATGTCCTTGAAGTTGTAGACAC-GGGCAAGATGCATCCAACGGG-ATACAAATTCCTCGCCTTCCA-GGACGTAACACTTGTCCCGTTCGAACAGAAAATGATCGATCGAACTTTACTTAGTGTGCCGGAGAAAAAGTGG-TTAAACGATTATAACGCTCGCATCCG-GCAGCACGTTGGAAGTGAACTGAAACGAAAGCACAAAATGGACGCCTTCTACTGGATGATGAACAAAACCCGGCACGTGCCAGAGTATGTGACGGAGGCAGACTATAACGGTGTCGCCACCACTCGGCACGATCATTTGTCGATCGCAGGTGCTCTAACGATCGGTTTCCTACTAACACGATTCGTTCTCAACTGAAACTGTTTGCCATACTGTGAGTGTGTCTCAGACACGCTGAAACGGTGCCATTAAATGTTCCATATATATCAACTACACCCCAAACACAATTGCCGCTGGGAGAAGCAGTTCAAATTTAAATCCATTCGAATCAATACACGGCGGGATCAGTTTTTGGTTTGGTTTGTGAATGATTTTTGTCTCGAGATCAATCGGCACCCTTCTCTAAACATACAAACCACCTACCGAGTATATCGGCAAACGGCGCACATTGGCACCAAACAGTTACGAGCGTATTTAAAACCAATTTAAAGATAAATTATTTACACCGCATAGATGTTAGCCATGATAAGAATGGAAGGCTACCGGGAAGATAAAAGCTTCTGCGAGAAAGAGTGATATTTTATTTATTCTGTTTCATCCATCGCGAACAAACTAAGCACTAAGAATTGTATGTTTAACGATGTAATACAACAATAAACTAG]

[+] EMBL BX622089             [GATTGCTGGTTTATGACGCTCCGCTTAAGTAGCATCTCTATCTCGGAAGTCAACAATGTACTCTAACAATTTGGTCCCTCCTTCCCTTCCTTAGTTTATTGCCGGTGATCACATCACGGAGTTGTCACTGGCACGCGAAATCGACCACGCCCGCAAGACGCAAAACAACTCGGAGGGAATCGCCTTCCCAACGAGCGTCGCCTACGGTGTACACTCCAGCATGCCCAACTATACACCCTCGAACCGTACGAATATCGAGCTGTCGGAGGGTATGGTGCTGATCGATTCTGGTGGCCAATACGAGGACGGTACGACGGAAGTGTCCCGTACGCTTCATCTCGGTGAACCGACAGCGGAACAAATCCGGGCCTATACGAACGTGCTGATCGGTATGATACGATTGTCCATGCTGACGTTCCCGGAAAATCTCAAACCTGCCGAGCTGGATGCACTGGCCCGTGGACCAGTCTGGGGCTCGATGAACGACTATCCGCACGGGACCGGTCATGGTATCGGATCTTACTCGTCTGTTCGGGAATCTCCTATCAGCATTTCCTACACGGCCAAACAGAGGTTTACCTTCAAGGAGGGATACTTTTTCTCGAATGAACCTGGTTACTATAAAAATGGTGCCTTCGGCATTCGACTCGAGAATGTCCTTGAAGTTGTAGACAC NGGCAAGATGCATNCAACGGG ATACNAATTCCTCGCCTTCCA NGACGTAACACTTGTCCCGNTCGAACAGAAAATGATCGATCGAACTTTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BX620621             [                                                                                                                                                                                                                                                                                                                                                         ACCGACAGCGGAACAAATCCGGGCCTATACGAACGTGCTGATTGGTATGATACGATTGTCCATGCTGACGTTCCCGGAGAATCTCAAACCTGCTGAACTGGATGCACTGGCCCGTGGACCAGTCTGGGGCTCGATGAACGACTATCCGCACGGGACTGGTCATGGTATCGGATCTTACTCGTCTGTTCGGGAATCTCCTATCAGCATTTCCTACACGGCCAAACAGAGGTTTACCTTCAAGGAGGGATACTTTTTCTCGAATGAACCTGGTTACTATAAAAATGGTGCCTTCGGTATTCGACTCGAGAATGTCCTTGAAGTTGTAGACAC GGGCAAGATGCATCCAACGGG ATACAAATTCCTCGCCTTCCA GGACGTAACACTTGTCCCGTTCGAACAGAAAATGATCGATCGAACTTTACTTAGTGTGCCTGAGAAAAAGTGG TTAAACGATTATAACGCTCGCATCCG GCAGCACGTTGGAAGTGAACTGAAACGAAAGCACAAAATGGACGCCTTCTACTGGATGATGAACAAAACCCGGCACGTGCCAGAGTATGTGACGGAGGCAGACTATAACGGTGTCGCCACCACTCGGCACGATCATTTGTCGATCGCAGGTGCTCTAACGATCGGNTTCCTACTAACACGATTCGTTCTCAACTGAAACTGNTTGCCATACTGTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CNS0989H             [                                                                                                                                                                                                                                                                                                                                                                                                                      tTGCTGACGTT CCGGAAAATCTCAAACCTGCTGAACTGGATGCACTGGCCCGTGGACCAGTCTGGGGCTCGATGAACGACTATCCTCACGGGACCGGTCATGGTATCGGATCTTACTCGTCTGTTCGGGAATCTCCTATCAGCATTTCCTACACGGCCAAACAGAGGTTTACCTTCAAGGAGGGATACTTTTTCTCGAATGAACCTGGTTACTATAAAAATGGTGCCTTCGGCATTCGACTCGAGAATGTCCTTGAAGTTGTAGACACGGGGCAAGATGCATCCAACGGGCATACAAATTCCTCGCCTTCCAGGGACGTAACACTTGTCCCGTTCGAACAGAAAATGATCGATCGAACTTTACTTAGTGTGCCGGAGAAAAAGTGGCTTGAATGATTATAACGCACGCATCCGCGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BM626151             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ccGAGAAAAAGTGG TTAAACGATTATAACGCTCGCATCCG GCAGCACGTTGGAAGTGAACTGAAACGAAAGCACAAAATGGACGCCTTCTACTGGATGATGAACAAAACCCGGCACGTGCCAGAGTATGTGACGGAGGCGGACTACAACGGTGTCGCCACCACTCGGCACGATCATTTGTCGATCGCAGGTGCTCTAACGATCGGTTTCCTACTAACACGATTCGTTCTCAACTGAAACTGTTTGCCATACTGTGAGCGTGTCTCAGACACGCTGAAACGGTGCCATTAAATGTTCCATATATATCAACTACACCCCAAACACAATTGCTGCTGAGGGAAGCAGTTCAATTTTAAATTCATTCGAATCAATACACGGCGGGATCAGTTTTTGGTTTGATTTGTGAATGATTTTTGTCTCGAGACCAATCGGCACCCTTCTCT     T  AAACCAACTACCGAGTATATCGGCAAACGGCGCACATTTGCACCAAACAGTTACGAGCGTATTTAAAACCAATTTAAAGATAAATTATTTACACCGCATAGATGTTAGCCATGACAAGAATGGAAGGCTACCGGGAAGACAAAAGCTTCTGCGAGAAAGAGTGATATTTTATTTATTCTGGTTCATCCATCGCGAACAAACTAAGCACTAAGAATTGTATGTTTAACGATGTAATACAACAATAAA    ]
[+] EMBL BX612043             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GATTATAACGCTCGCATCCG GCCTCACGTTGGAAGTGAACTGAAACGAAAGCACAAAATGGACGCCTTCTACTGGATGATGAACAAAACCCGGCACGTGCCAGAGTATGTGACGGAGGCAGACTATAACGGTGTCGCCACCACTCGGCACGATCATTTGTCGATCGCAGGTGCTCTAACGATCGGTTTCCTACTAACACGATTCGTTCTCAACTGAAACTGTTTGCCATACTGTGAGTGTGTCTCAGACACGCTGAAACGGTGCCATTAAATGTTCCATATATATCAACTACACCCCAAACACAATTGCCGCTGGGAGAAGCAGTTCAAATTTAAATCCATTCGAATCAATACACGGCGGGATCAGTTTTTGGTTTGGTTTGTGAATGATTTTTGTCTCGAGATCAATCGGCACCCTTCTCTAAACATACAAACCACCTACCGAGTATATCGGCAAACGGCGCACATTGGCACCAAACAGTTACGAGCGTATTTAAAACCAATTTAAAGATAAATTATTTACACCGCATAGATGTTAGCCATGATAAGAATGGAAGGCTACCGGGAAGATAAAAGCTTCTGCGAGAAAGAGTGATATTTTATTTATTCTGTTTCATCCATCGCGAACAAACTAAGCACTAAGAATTGTATGTTTAACGATGTAATACAACAATAAACTAG]
[+] EMBL BX611961             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AACTGAAACGAAAGCACAAAATGGACGCCTTCTACTGGATGATGAACAAAACCCGGCACGTGCCAGAGTATGTGACGGAGGCAGACTATAACGGTGTCGCCACCACTCGGCACGATCATTTGTCGATCGCAGGTGCTCTAACGATCGGTTTCCTACTAACACGATTCGTTCTCAACTGAAACTGTTTGCCATACTGTGAGTGTGTCTCAGACACGCTGAAACGGTGCCATTAAATGTTCCATATATATCAACTACACCCCAAACACAATTGCCGCTGGGAGAAGCAGTTCAAATTTAAATCCATTCGAATCAATACACGGCGGGATCAGTTTTTGGTTTGGTTTGTGAATGATTTTTGTCTCGAGATCAATCGGCACCCTTCTCTAAACATACAAACCACCTACCGAGTATATCGGCAAACGGCGCACATTGGCACCAAACAGTTACGAGCGTATTTAAAACCAATTTAAAGATAAATTATTTACACCGCATAGATGTTAGCCATGATAAGAATGGAAGGCTACCGGGAAGATAAAAGCTTCTGCGAGAAAGAGTGATATTTTATTTATTCTGTTTCATCCATCGCGAACAAACTAAGCACTAAGAATTGTATGTTTAACGATGTAATACAA           ]


>consensus_8147#0 GATTGCTGGTTTATGACGCTCCGCTTAAGTAGCATCTCTATCTCGGAAGTCAACAATGTA CTCTAACAATTTGGTCCCTCCTTCCCTTCCTTAGTTTATTGCCGGTGATCACATCACGGA GTTGTCACTGGCACGCGAAATCGACCACGCCCGCAAGACGCAAAACAACTCGGAGGGAAT CGCCTTCCCAACGAGCGTCGCCTACGGTGTACACTCCAGCATGCCCAACTATACACCCTC GAACCGTACGAATATCGAGCTGTCGGAGGGTATGGTGCTGATCGATTCTGGTGGCCAATA CGAGGACGGTACGACGGAAGTGTCCCGTACGCTTCATCTCGGTGAACCGACAGCGGAACA AATCCGGGCCTATACGAACGTGCTGATCGGTATGATACGATTGTCCATGCTGACGTTCCC GGAAAATCTCAAACCTGCTGAACTGGATGCACTGGCCCGTGGACCAGTCTGGGGCTCGAT GAACGACTATCCGCACGGGACCGGTCATGGTATCGGATCTTACTCGTCTGTTCGGGAATC TCCTATCAGCATTTCCTACACGGCCAAACAGAGGTTTACCTTCAAGGAGGGATACTTTTT CTCGAATGAACCTGGTTACTATAAAAATGGTGCCTTCGGCATTCGACTCGAGAATGTCCT TGAAGTTGTAGACACGGGCAAGATGCATCCAACGGGATACAAATTCCTCGCCTTCCAGGA CGTAACACTTGTCCCGTTCGAACAGAAAATGATCGATCGAACTTTACTTAGTGTGCCGGA GAAAAAGTGGTTAAACGATTATAACGCTCGCATCCGGCAGCACGTTGGAAGTGAACTGAA ACGAAAGCACAAAATGGACGCCTTCTACTGGATGATGAACAAAACCCGGCACGTGCCAGA GTATGTGACGGAGGCAGACTATAACGGTGTCGCCACCACTCGGCACGATCATTTGTCGAT CGCAGGTGCTCTAACGATCGGTTTCCTACTAACACGATTCGTTCTCAACTGAAACTGTTT GCCATACTGTGAGTGTGTCTCAGACACGCTGAAACGGTGCCATTAAATGTTCCATATATA TCAACTACACCCCAAACACAATTGCCGCTGGGAGAAGCAGTTCAAATTTAAATCCATTCG AATCAATACACGGCGGGATCAGTTTTTGGTTTGGTTTGTGAATGATTTTTGTCTCGAGAT CAATCGGCACCCTTCTCTAAACATACAAACCACCTACCGAGTATATCGGCAAACGGCGCA CATTGGCACCAAACAGTTACGAGCGTATTTAAAACCAATTTAAAGATAAATTATTTACAC CGCATAGATGTTAGCCATGATAAGAATGGAAGGCTACCGGGAAGATAAAAGCTTCTGCGA GAAAGAGTGATATTTTATTTATTCTGTTTCATCCATCGCGAACAAACTAAGCACTAAGAA TTGTATGTTTAACGATGTAATACAACAATAAACTAG



consensusID : consensus_8147#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 700
fasta sequence
                              [CCCCGCAGGTTAACTTTACTTAGTGTGCCTGAGAAAAAGTGGTTAACACTGATTATAACTGCTCGCATACTGGCAGCACGTTGGAATGTGAACTGAAACGAAAGCACAAAATGGACGCCTTCTACTGGATGATGAACAAAACCCGGCACGTGCCAGAGTATGTGACTGGAGTGCGGACTACAACGTGTGTCTGCACACTCGGCACGATCATTATGTCGATCGCCGGTGCTCTAACGATCGGTTTCCTACTAACACCGATTACGTTCTACAACTGAAACTGTTGCCATACTGTGAGCGTGTACTCAGACACGCTGAAACGGTGCCATTAACATGTTCCATATATATCAACTACACCCCAAACACAATCTGCTGCCTGANGGACAGCAGTTCAATCTCCTCAACNTTCCATATCGANATCAATACACGGACGGGAATCAGTATTAANCGGTCTATCGACTATCCGTGAATTGATNCNCANAGTATACGAGAACCAATCGGCCANCCTATCTACTNTNCAGNCAGCCACAACATAACACCGGACGGTANTTACTTCCGGCCCAACACCGGGGCAGGCCCAACAATTAATGGGCACCCCNAACAANACAGGTACTAACCCGNANGCCCGCTAATTATCTANACCAAGCCCCACACTCTATAAACAAAGCGCACTAACAATATAATTTATAAGCNACCCGCAATA]

[+] EMBL AL695291             [CCCCGCAGGTTAACTTTACTTAGTGTGCCTGAGAAAAAGTGGTTAACACTGATTATAACTGCTCGCATACTGGCAGCACGTTGGAATGTGAACTGAAACGAAAGCACAAAATGGACGCCTTCTACTGGATGATGAACAAAACCCGGCACGTGCCAGAGTATGTGACTGGAGTGCGGACTACAACGTGTGTCTGCACACTCGGCACGATCATTATGTCGATCGCCGGTGCTCTAACGATCGGTTTCCTACTAACACCGATTACGTTCTACAACTGAAACTGTTGCCATACTGTGAGCGTGTACTCAGACACGCTGAAACGGTGCCATTAACATGTTCCATATATATCAACTACACCCCAAACACAATCTGCTGCCTGANGGACAGCAGTTCAATCTCCTCAACNTTCCATATCGANATCAATACACGGACGGGAATCAGTATTAANCGGTCTATCGACTATCCGTGAATTGATNCNCANAGTATACGAGAACCAATCGGCCANCCTATCTACTNTNCAGNCAGCCACAACATAACACCGGACGGTANTTACTTCCGGCCCAACACCGGGGCAGGCCCAACAATTAATGGGCACCCCNAACAANACAGGTACTAACCCGNANGCCCGCTAATTATCTANACCAAGCCCCACACTCTATAAACAAAGCGCACTAACAATATAATTTATAAGCNACCCGCAATA]


>consensus_8147#1 CCCCGCAGGTTAACTTTACTTAGTGTGCCTGAGAAAAAGTGGTTAACACTGATTATAACT GCTCGCATACTGGCAGCACGTTGGAATGTGAACTGAAACGAAAGCACAAAATGGACGCCT TCTACTGGATGATGAACAAAACCCGGCACGTGCCAGAGTATGTGACTGGAGTGCGGACTA CAACGTGTGTCTGCACACTCGGCACGATCATTATGTCGATCGCCGGTGCTCTAACGATCG GTTTCCTACTAACACCGATTACGTTCTACAACTGAAACTGTTGCCATACTGTGAGCGTGT ACTCAGACACGCTGAAACGGTGCCATTAACATGTTCCATATATATCAACTACACCCCAAA CACAATCTGCTGCCTGANGGACAGCAGTTCAATCTCCTCAACNTTCCATATCGANATCAA TACACGGACGGGAATCAGTATTAANCGGTCTATCGACTATCCGTGAATTGATNCNCANAG TATACGAGAACCAATCGGCCANCCTATCTACTNTNCAGNCAGCCACAACATAACACCGGA CGGTANTTACTTCCGGCCCAACACCGGGGCAGGCCCAACAATTAATGGGCACCCCNAACA ANACAGGTACTAACCCGNANGCCCGCTAATTATCTANACCAAGCCCCACACTCTATAAAC AAAGCGCACTAACAATATAATTTATAAGCNACCCGCAATA



consensusID : consensus_8147#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 662
fasta sequence
                              [CCGACGTCGTCCAGCGCCTCGATCCGGTGCCATCAAGGTACATCCGGTACGGTTCGCTGGCGAGCGGTGGGACAGCAAGGTAGCGAGGCTGCGTGCCAACCTGACGGCTATGCGATGCGACGGCATGATCGTGACCTCGCTGACCGAGGTGGCGTACTTGCTGAACTTGCGCGGTAGCGATATCCCTCATGTGCCTGTGTTCAAGGCATATCTATTGGTAACGCACCGAGAGCTGCTGCTGTACACCAACACGAGCCGGGAGACGCTTGGCTTGAAGAACCACTTGAAGGCTCACTCCTGCCACAACGAGAACTGTGTACAGCTGCGCGACTACGGCGATGTGTGGCGCGATTTGCGCACTCTGGCACAGCACTGGCACCGGCTGCTGGTGCCCGGTGCCGTCGTCTTCGATACCGGAGCCTCGGAAGCCATACATGCGACCCTGCCACGGAACATCGTGTTCGAGCGACCGTCGCCGATTATCTTTCTGCGTGCGCAAAAGAACCAAGTGGAACGGCAAGGCATGCGGCAGGCCCACATCCGGGACGGTGTGGCCATGTGCGAAGTGCTGAGTCGGCTGGAGGAGCGGTTTATTGCCGGTGATCACATCACGGAGTTGTCACTGGCACGCGAAATCGACCACGCCCGCAAGACGCAAAACA]

[+] EMBL BM646320             [CCGACGTCGTCCAGCGCCTCGATCCGGTGCCATCAAGGTACATCCGGTACGGTTCGCTGGCGAGCGGTGGGACAGCAAGGTAGCGAGGCTGCGTGCCAACCTGACGGCTATGCGATGCGACGGCATGATCGTGACCTCGCTGACCGAGGTGGCGTACTTGCTGAACTTGCGCGGTAGCGATATCCCTCATGTGCCTGTGTTCAAGGCATATCTATTGGTAACGCACCGAGAGCTGCTGCTGTACACCAACACGAGCCGGGAGACGCTTGGCTTGAAGAACCACTTGAAGGCTCACTCCTGCCACAACGAGAACTGTGTACAGCTGCGCGACTACGGCGATGTGTGGCGCGATTTGCGCACTCTGGCACAGCACTGGCACCGGCTGCTGGTGCCCGGTGCCGTCGTCTTCGATACCGGAGCCTCGGAAGCCATACATGCGACCCTGCCACGGAACATCGTGTTCGAGCGACCGTCGCCGATTATCTTTCTGCGTGCGCAAAAGAACCAAGTGGAACGGCAAGGCATGCGGCAGGCCCACATCCGGGACGGTGTGGCCATGTGCGAAGTGCTGAGTCGGCTGGAGGAGCGGTTTATTGCCGGTGATCACATCACGGAGTTGTCACTGGCACGCGAAATCGACCACGCCCGCAAGACGCAAAACA]


>consensus_8147#2 CCGACGTCGTCCAGCGCCTCGATCCGGTGCCATCAAGGTACATCCGGTACGGTTCGCTGG CGAGCGGTGGGACAGCAAGGTAGCGAGGCTGCGTGCCAACCTGACGGCTATGCGATGCGA CGGCATGATCGTGACCTCGCTGACCGAGGTGGCGTACTTGCTGAACTTGCGCGGTAGCGA TATCCCTCATGTGCCTGTGTTCAAGGCATATCTATTGGTAACGCACCGAGAGCTGCTGCT GTACACCAACACGAGCCGGGAGACGCTTGGCTTGAAGAACCACTTGAAGGCTCACTCCTG CCACAACGAGAACTGTGTACAGCTGCGCGACTACGGCGATGTGTGGCGCGATTTGCGCAC TCTGGCACAGCACTGGCACCGGCTGCTGGTGCCCGGTGCCGTCGTCTTCGATACCGGAGC CTCGGAAGCCATACATGCGACCCTGCCACGGAACATCGTGTTCGAGCGACCGTCGCCGAT TATCTTTCTGCGTGCGCAAAAGAACCAAGTGGAACGGCAAGGCATGCGGCAGGCCCACAT CCGGGACGGTGTGGCCATGTGCGAAGTGCTGAGTCGGCTGGAGGAGCGGTTTATTGCCGG TGATCACATCACGGAGTTGTCACTGGCACGCGAAATCGACCACGCCCGCAAGACGCAAAA CA



consensusID : consensus_8147#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 629
fasta sequence
                              [CGACCCACGCGTCCGCGAAAGCACAAAATGGACGCCTTCTACTGGATGATGAACAAAACCCGGCACGTGCCAGAGTATGTGACGGAGGCAGACTACAACGGTGTCGCCACCACTCGGCACGATCATTTGTCGATCGCAGGTGCTCTAACGATCGGTTTCCTACTAACACGATTCGTTCTCAACTGAAACTGTTTGCCATACTGTGAGCGTGTCTCAGACACGCTGAAACGGTGCCATTAAATGTTCCATATATATCAACTACACCCCAAACACAATTGCTGCTGAGGGAAGCAGTTCAATTTTAAATTCATTCGAATCAATACACGGCGGGATCAGTTTTTGGTTTGATTTGTGAATGATTTTTGTCTCGAGACCAATCGGCACCCTTCTCCTAAACCAACTACCGAGTATATCGGCAAACGGCGCACATTGGCACCAAACAGTTACGAGCGTATTTAAAACCAATTTAAAGATAAATTATTTACACCGCATAGATGTTAGCCATGACAAGAATGGAAGGCTACCGGGAAGATAAAAGCTTCTGCGAGAACGAGTGATATTTTATTTATTCTGTTTCATCCATCGCGAACAAACTAAGCACTAAGAATTGTATGTTTAACGATGTAATA]

[+] EMBL BM634421             [CGACCCACGCGTCCGCGAAAGCACAAAATGGACGCCTTCTACTGGATGATGAACAAAACCCGGCACGTGCCAGAGTATGTGACGGAGGCAGACTACAACGGTGTCGCCACCACTCGGCACGATCATTTGTCGATCGCAGGTGCTCTAACGATCGGTTTCCTACTAACACGATTCGTTCTCAACTGAAACTGTTTGCCATACTGTGAGCGTGTCTCAGACACGCTGAAACGGTGCCATTAAATGTTCCATATATATCAACTACACCCCAAACACAATTGCTGCTGAGGGAAGCAGTTCAATTTTAAATTCATTCGAATCAATACACGGCGGGATCAGTTTTTGGTTTGATTTGTGAATGATTTTTGTCTCGAGACCAATCGGCACCCTTCTCCTAAACCAACTACCGAGTATATCGGCAAACGGCGCACATTGGCACCAAACAGTTACGAGCGTATTTAAAACCAATTTAAAGATAAATTATTTACACCGCATAGATGTTAGCCATGACAAGAATGGAAGGCTACCGGGAAGATAAAAGCTTCTGCGAGAACGAGTGATATTTTATTTATTCTGTTTCATCCATCGCGAACAAACTAAGCACTAAGAATTGTATGTTTAACGATGTAATA]


>consensus_8147#3 CGACCCACGCGTCCGCGAAAGCACAAAATGGACGCCTTCTACTGGATGATGAACAAAACC CGGCACGTGCCAGAGTATGTGACGGAGGCAGACTACAACGGTGTCGCCACCACTCGGCAC GATCATTTGTCGATCGCAGGTGCTCTAACGATCGGTTTCCTACTAACACGATTCGTTCTC AACTGAAACTGTTTGCCATACTGTGAGCGTGTCTCAGACACGCTGAAACGGTGCCATTAA ATGTTCCATATATATCAACTACACCCCAAACACAATTGCTGCTGAGGGAAGCAGTTCAAT TTTAAATTCATTCGAATCAATACACGGCGGGATCAGTTTTTGGTTTGATTTGTGAATGAT TTTTGTCTCGAGACCAATCGGCACCCTTCTCCTAAACCAACTACCGAGTATATCGGCAAA CGGCGCACATTGGCACCAAACAGTTACGAGCGTATTTAAAACCAATTTAAAGATAAATTA TTTACACCGCATAGATGTTAGCCATGACAAGAATGGAAGGCTACCGGGAAGATAAAAGCT TCTGCGAGAACGAGTGATATTTTATTTATTCTGTTTCATCCATCGCGAACAAACTAAGCA CTAAGAATTGTATGTTTAACGATGTAATA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8147#0      GATTGCTGGTTTATGACGCTCCGCTTAAGTAGCATCTCTATCTCGGAAGTCAACAATGTA 60
consensus_8147#3      ------------------------------------------------------------
consensus_8147#1      ------------------------------------------------------------
consensus_8147#2      ------------------------------------------------------------
                                                                                  

consensus_8147#0      CTCTAACAATTTGGTCCCTCCTTCCCTTCCTTAGTTTATTGCCGGTGATCACATCACGGA 120
consensus_8147#3      ------------------------------------------------------------
consensus_8147#1      ------------------------------------------------------------
consensus_8147#2      ------------------------------------------------------------
                                                                                  

consensus_8147#0      GTTGTCACTGGCACGCGAAATCGACCACGCCCGCAAGACGCAAAACAACTCGGAGGGAAT 180
consensus_8147#3      ------------------------------------------------------------
consensus_8147#1      ------------------------------------------------------------
consensus_8147#2      ------------------------------------------------------------
                                                                                  

consensus_8147#0      CGCCTTCCCAACGAGCGTCGCCTACGGTGTACACTCCAGCATGCCCAACTATACACCCTC 240
consensus_8147#3      ------------------------------------------------------------
consensus_8147#1      ------------------------------------------------------------
consensus_8147#2      ------------------------------------------------------------
                                                                                  

consensus_8147#0      GAACCGTACGAATATCGAGCTGTCGGAGGGTATGGTGCTGATCGATTCTGGTGGCCAATA 300
consensus_8147#3      ------------------------------------------------------------
consensus_8147#1      ------------------------------------------------------------
consensus_8147#2      ------------------------------------------------------------
                                                                                  

consensus_8147#0      CGAGGACGGTACGACGGAAGTGTCCCGTACGCTTCATCTCGGTGAACCGACAGCGGAACA 360
consensus_8147#3      ------------------------------------------------------------
consensus_8147#1      ------------------------------------------------------------
consensus_8147#2      ------------------------------------------------------------
                                                                                  

consensus_8147#0      AATCCGGGCCTATACGAACGTGCTGATCGGTATGATACGATTGTCCATGCTGACGTTCCC 420
consensus_8147#3      ------------------------------------------------------------
consensus_8147#1      ------------------------------------------------------------
consensus_8147#2      ------------------------------------------------------------
                                                                                  

consensus_8147#0      GGAAAATCTCAAACCTGCTGAACTGGATGCACTGGCCCGTGGACCAGTCTGGGGCTCGAT 480
consensus_8147#3      ------------------------------------------------------------
consensus_8147#1      ------------------------------------------------------------
consensus_8147#2      ------------------------------------------------------------
                                                                                  

consensus_8147#0      GAACGACTATCCGCACGGGACCGGTCATGGTATCGGATCTTACTCGTCTGTTCGGGAATC 540
consensus_8147#3      ------------------------------------------------------------
consensus_8147#1      ------------------------------------------------------------
consensus_8147#2      ------------------------------------------------------------
                                                                                  

consensus_8147#0      TCCTATCAGCATTTCCTACACGGCCAAACAGAGGTTTACCTTCAAGGAGGGATACTTTTT 600
consensus_8147#3      ------------------------------------------------------------
consensus_8147#1      ------------------------------------------------------------
consensus_8147#2      ------------------------------------------------------------
                                                                                  

consensus_8147#0      CTCGAATGAACCTGGTTACTATAAAAATGGTGCCTTCGGCATTCGACTCGAGAATGTCCT 660
consensus_8147#3      ------------------------------------------------------------
consensus_8147#1      ------------------------------------------------------------
consensus_8147#2      ------------------------------------------------------------
                                                                                  

consensus_8147#0      TGAAGTTGTAGACACGGGCAAGATGCATCCAACGGGATACAAATTCCTCGCCTTCCAGGA 720
consensus_8147#3      ------------------------------------------------------------
consensus_8147#1      ------------------------------------------------------------
consensus_8147#2      ------------------------------------------------------------
                                                                                  

consensus_8147#0      CGTAACACTTGTCCCGTTCGAACAGAAAATGATCGATCGAACTTTACTTAGTGTGCCGGA 780
consensus_8147#3      ------------------------------------------------------------
consensus_8147#1      ----------------------------CCCCGCAGGTTAACTTTACTTAGTGTGCCTGA 32
consensus_8147#2      ------------------------------------------------------------
                                                                                  

consensus_8147#0      GAAAAAGTGGTTAAA--CGATTATAAC-GCTCGCAT-CCGGCAGCACGTTGGAA-GTGAA 835
consensus_8147#3      --------------------------------------------------CGAC-CCACG 9
consensus_8147#1      GAAAAAGTGGTTAACACTGATTATAACTGCTCGCATACTGGCAGCACGTTGGAATGTGAA 92
consensus_8147#2      ------------------------------CCGACGTCGTCCAGCGCCTCGATCCGGTGC 30
                                                                                  

consensus_8147#0      CTGAAACGAAAGCACAAAATGGA-CGCCTTCTACTGGATGATGAACAAAACCCGGCACGT 894
consensus_8147#3      CGTCCGCGAAAGCACAAAATGGA-CGCCTTCTACTGGATGATGAACAAAACCCGGCACGT 68
consensus_8147#1      CTGAAACGAAAGCACAAAATGGA-CGCCTTCTACTGGATGATGAACAAAACCCGGCACGT 151
consensus_8147#2      CATCAAGGTACATCCGGTACGGTTCGCTGGCGAGCGGTGGGACAGCAAGGTAGCGAGGCT 90
                      *      * *    *   * **  ***   * *  **  *   * ***      *    *

consensus_8147#0      GCCAGAGTATGTGAC-GGAG-GCAGACTATAACG-GTGTCGCCACCACTCGGCACGATCA 951
consensus_8147#3      GCCAGAGTATGTGAC-GGAG-GCAGACTACAACG-GTGTCGCCACCACTCGGCACGATCA 125
consensus_8147#1      GCCAGAGTATGTGACTGGAGTGCGGACTACAACGTGTGTCTGCAC-ACTCGGCACGATCA 210
consensus_8147#2      GCGTGCCAACCTGACGGCTATGCGA--TGCGACG-GCATGATCGTGACCTCGC-TGACCG 146
                      **  *   *  **** *    **    *   *** *  *   *   **   **  ** * 

consensus_8147#0      TT-TGTCG-ATCGCAGGTGCTCTAACGATCGGTTTCCTACTAACAC-GATT-CGTTCT-C 1006
consensus_8147#3      TT-TGTCG-ATCGCAGGTGCTCTAACGATCGGTTTCCTACTAACAC-GATT-CGTTCT-C 180
consensus_8147#1      TTATGTCG-ATCGCCGGTGCTCTAACGATCGGTTTCCTACTAACACCGATTACGTTCTAC 269
consensus_8147#2      AGGTGGCGTACTTGCTGAACTTGCGCGGTAGCGATATCCCTCATGT-GCCTGTGTTCA-- 203
                         ** ** *      *  **    ** * *   *    ** *    *  *  ****   

consensus_8147#0      AACTGAAACTGTTTGCCATACTGTGAGTGTGT-CTCAGACACGCTGAAACGGTGCCATTA 1065
consensus_8147#3      AACTGAAACTGTTTGCCATACTGTGAGCGTGT-CTCAGACACGCTGAAACGGTGCCATTA 239
consensus_8147#1      AACTGAAACTGTT-GCCATACTGTGAGCGTGTACTCAGACACGCTGAAACGGTGCCATTA 328
consensus_8147#2      AGGCATATCTATTGGTAACGCACCGAGAGC-TGCTGCTGTACACCAACACGA-GCCGGGA 261
                      *     * ** ** *  *  *   *** *  * **     ** *  * ***  ***   *

consensus_8147#0      A-ATGTTCCATATATATCAACTACACCCCAAACACAAT-TGCCGC-TGGGAGA-AGCAGT 1121
consensus_8147#3      A-ATGTTCCATATATATCAACTACACCCCAAACACAAT-TGCTGC-TGAGGGA-AGCAGT 295
consensus_8147#1      ACATGTTCCATATATATCAACTACACCCCAAACACAATCTGCTGCCTGANGGACAGCAGT 388
consensus_8147#2      G-ACGCTTGGCTTG----AAGAACCACTTGAAGGCTCACTCCTGCCACAACGAGAACTGT 316
                        * * *     *     **  **  *   **  *    * * **      ** * * **

consensus_8147#0      TCAAATTTAAATCCATTCGAATCAATACACGGCGGGATCAGT---TTTTGGTTTGGT-TT 1177
consensus_8147#3      TCAATTTTAAATTCATTCGAATCAATACACGGCGGGATCAGT---TTTTGGTTTGAT-TT 351
consensus_8147#1      TCAATCTC-------CTCAA--CNTTCCATATCGANATCAAT---ACACGGA-------C 429
consensus_8147#2      GTACAGCTGCGCGACTACGG--CGATGTGTGGCGCGATTTGCGCACTCTGGCACAGCACT 374
                        *              *    *  *      **  **           **         

consensus_8147#0      GTGAATGATTTTTGTCTCGAGAT-CAATCGGCACCCTTCTCTAAACATACAAACCACCTA 1236
consensus_8147#3      GTGAATGATTTTTGTCTCGAGAC-CAATCGGCACCCTTCTCC-------TAAACCAACTA 403
consensus_8147#1      GGGAATCAGTATTAANC---GGT-CTATCGACTATCCGTG----------AATTGATNCN 475
consensus_8147#2      GGCACCGGCTGCTGGTGCCCGGTGCCGTCGTCTTCGATACCG--------GAGCCTCGGA 426
                      *  *     *  *       *   *  *** *                   *        

consensus_8147#0      CCGAGTATATCGG---CAAACGGCGCACATTGGCACCAAACAGTTACGAGCG--TATTTA 1291
consensus_8147#3      CCGAGTATATCGG---CAAACGGCGCACATTGGCACCAAACAGTTACGAGCG--TATTTA 458
consensus_8147#1      CANAGTATACGAGAACCAATCGGCCANCCTATCTACTNTNCAGNCAGCCACA---ACATA 532
consensus_8147#2      AGCCATACATGCGACCCTGCCACGGAACATCGTGTTCGAGCGACCGTCGCCGATTATCTT 486
                           ** *   *   *   *      * *          *         *    *  * 

consensus_8147#0      AAACCAATTTAAAGATAAATTATTTACACCGCATAGATGTTAGCCATGATAAGAATGGAA 1351
consensus_8147#3      AAACCAATTTAAAGATAAATTATTTACACCGCATAGATGTTAGCCATGACAAGAATGGAA 518
consensus_8147#1      ACACCGGACGGTANTTA--CTTCCGGCCCAACACCGGGGCAGGCC-CAACAATTAATGGG 589
consensus_8147#2      TCTGCGTGCGCAAAAGAACCAAGTGGAACGGCA-AGGCATGCGGCAGGCCCACATCCGGG 545
                          *       *   *           *  **  *      * *      *     *  

consensus_8147#0      GGCTACCGGGAAGATAAAAGCTTCTGCGAGAAAGAGTGATATTTTATTTATTCTGTT-TC 1410
consensus_8147#3      GGCTACCGGGAAGATAAAAGCTTCTGCGAGAACGAGTGATATTTTATTTATTCTGTT-TC 577
consensus_8147#1      CACCCCNAACAANACAGGTACTAACCCGNANGCCCGCTA-ATTATCTANACCAAGCC-CC 647
consensus_8147#2      ACGGTGTGGCCATGTGCGAAGTGCTGAGTCGGCTGGAGGAGCGGTTTATTGCCGGTGATC 605
                                 *         *     *       *        * *       *    *

consensus_8147#0      ATCCATCGCGAACAAACTAAGCACTAAGAATTGTATGTTTAA-CGAT--GTAATACAACA 1467
consensus_8147#3      ATCCATCGCGAACAAACTAAGCACTAAGAATTGTATGTTTAA-CGAT--GTAATA----- 629
consensus_8147#1      ACACTCTATAAACAAA--GCGCACTAACAATATAATTTATAAGCNACCCGCAATA----- 700
consensus_8147#2      ACATCACGGAGTTGTCACTGGCACGCGAAATCGACCACGCCCGCAAGACGCAAAACA--- 662
                      *                   ****    ***            * *   * ** *     

consensus_8147#0      ATAAACTAG 1476
consensus_8147#3      ---------
consensus_8147#1      ---------
consensus_8147#2      ---------
                               




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)