These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8158#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1720 fasta sequence [GCGGATGCAGAACCCCCCTCCCGGCACGGCACTAATGTTCTTCATTCTTCGATATTTGTAACGACCACGCTGGACGATTTGTTGTACATAATTGTTAACGCAAACTTCTAGTCAAGTTGTTTCCTTATTATTGTTTGCGAACTTTACGTTCAACAAACACGTTCCACGGTGAAACAACGCCCTACAAATCGATTGAAATGAATGCGACGAAAGCAATCGTTAGCGCTGAAGAAATATCGACCGTGTGTGTCCGACCTATTGTTTTGTGGAATGAAGCTGAAATGAAACGGAACATTCACGGCTAAGCTGCAATCGAACTTACGGTTCGTGCGCAAGAAGACAGGCCAGCTTGAGAAGGGAAACATTTAACATTGTAGTAACATAAAATGGTAATCATAAAACAGCAAACTGCACCGAGCGATGAGATAGACGCAAACATTGAAACTAAGAGCACTACTGTTGATATATTTCTATTACGCAGAACCAGAACCCCCCCCCCCTCCACCCCCCAAATCACACACACATCTCCCCATATCCCCGCGCTCCAACATAGAGTATGTTGCCCTCAACTAGTTATTGCGGGTGAAAATATAGGCGCAAAATACGTCAGAATGCTAAAACGAAACATGTTTAAATGGATAAGCGAATGGAACAAAGAAACAAAAGAAAAGAACATTAAAATCTAAACTCTACATATGCACTCACGTACGAACGCAACAAAGAAACAAACAAAAAATACTAGATGTCAAATTCGAGAGCAAACTCATACTAATAAATACAACAAAAGAAGAAAAAAGAAACACACAAACACACATAAAGAAGAGAAAATAATCATTCTTGCACAAGTTTAACTGGTGTCTACTAGCACAAACATAATAAGCGTGTGGCAGCAATCGCAAACTGCAACCATTCCTCACATGTTCGCATCCATTTGCGAACATGCTGAACATACCATTTAACAAAAGGAAACCATCTCCCCATTCACCCCGTTAAGGATAGGTTTGGAACAGCAGGGCAACGTCATTCGGCAGCAACACGCGATTGTTCAAGGGAGAGAGAAAACAAACAAACAATTGGGTGACCAAGTCGCGAAATTATGCAAACAATTTAATCGAAGCACAGACACACATAAACAAAACAAAAAGGAATAAAAAAAATAACAACCACACACTCTTCACTACTCTAAATGTGTAAAAGCTCCGCGAGATTCGAGATTGTACTGTGTGAAACTTTGGAACGATGTGACAGAAAAGGGGAAAGCAAAAGAAGAAAACGTGCGTTTTCGGTAGTGCTCCAATGCTAATGGTGTGGCTAAAGAAAGATTATTGTGCACACGTATAACTATA-TTTAAACGCTATCTCG-TAAAACT-GAAATCCCGC-TGAACTCTCCTAAACAGAACAACCAAAAAGAAGACGAAGAA---AAAAGAAACAAG-AAAA-ACANAGGAACTAAGACAATCCAAATTGCATCTCTCCCCCCACTTGTCTGTCTGTCCACCTGATTCATGTTTAAGAGCGTGTGTCCAAGCAAGCCGTGCGCGTGCGGCTCGTAGTGAAAAAGAGGCGGCGTTAGCAGGCGGTTTAAAGGGCTACAAAATTAAGTCATAATAGAGAGCATGTGTGATGTTGATGGGATGTTTTTTCCGTTTTTTTCGATATTTAAATAATAATAATTATAATAATAATATAAAACAGAGCATTACTGGAGACAGGTACACAGCAAG] [+] EMBL BX604599 [GCGGATGCAGAACCCCCCTCCCGGCACGGCACTAATGTTCTTCATTCTTCGATATTTGTAACGACCACGCTGGACGATTTGTTGTACATAATTGTTAACGCAAACTTCTAGTCAAGTTGTTTCCTTATTATTGTTTGCGAACTTTACGTTCAACAAACACGTTCCACGGTGAAACAACGCCCTACAAATCGATTGAAATGAATGCGACGAAAGCAATCGTTAGCGCTGAAGAAATATCGACCGTGTGTGTCCGACCTATTGTTTTGTGGAATGAAGCTGAAATGAAACGGAACATTCACGGCTAAGCTGCAATCGAACTTACGGTTCGTGCGCAAGAAGACAGGCCAGCTTGAGAAGGGAAACATTTAACATTGTAGTAACATAAAATGGTAATCATAAAACAGCAAACTGCACCGAGCGATGAGATAGACGCAAACATTGAAACTAAGAGCACTACTGTTGATATATTTCTATTACGCAGAACCAGAACCCCCCCCCCCTCCACCCCCCAAATCACACACACATCTCCCCA ] [+] EMBL BX616719 [ GAGAAGGGAAACATTTAACATTGTAGTAACATAAAATGGTAATCATAAAACAGCAAACTGCACCGAGCGATGAGATAGACGCAAACATTGAAACTAAGAGCACTACTGTTGATATATTTCTATTACGCAGAACCAGAACCCCCCCCCCCTCCTCCCCACAAATCACACACACATCTCCCCATATCCCCGCGCTCCAACATAGAGTATGTTGCCCTCAACTAGTTATTGCGGGTGAAAATATAGGCGCAAAATACGTCAGAATGCTAAAACGAAACATGTTTAAATGGATAAGCGAATGGAACAAAGAAACAAAAGAAAAGAACATTAAAATCTAAACTCTACATATGCACTCACGTACGAACGCAACAAAGAAACAAACAAAAAATACTAGATGTCAAATTCGAGAGCAAACTCATACTAATAAATACAACAAAAGAAGAAAAAAGAAACACACAAACACACATAAAGAAGAGAAAATAATCATTCTTGCACAAGTTTAAC ] [+] EMBL BX626902 [ ATGCTAAAACGAAACATGTTTNAATGGATAAGCGAATGGAACAAAGAAACAAAAGAAAAGAACATTAAAATCTAAACTCTACATATGCACTCACGTACGAACGCAACAAAGAAACAAACAAAAAATACTAGATGTCAAATTCGAGAGCAAACTCATACTAATAAATACAACAAAAGAATAAAAAAGAAACACACAAACACACATAAAGAAGAGAAAATAATCATTCTTGCACAAGTTTAACTGGTGTCTACTAGCACAAACATAATAAGCGTGTGGCAGCAATCGCAAACTGCAACCATTCCTCACATGTTCGCATCCATTTGCGAACATGCTGAACATACCATTTAACAAAAGGAAACCATCTCCCCATTCACCCCGTTAAGGATAGGTTTGGAACAGCANGGCAACGTCATTCGGCAGCAA ] [+] EMBL BX622685 [ AATGGATAAGCGAATGGAACAAAGAAACAAAAGAAAAGAACATTAAAATCTAAACTCTACATATGCACTCACGTACGAACGCAACAAAGAAACAAACAAAAAATACTAGATGTCAAATTCGAGAGCAAACTCATACTAATAAATACAACAAAAGAATAAAAAAGAAACACACAAACACACATAAAGAAGAGAAAATAATCATTCTTGCACAAGTTTAACTGGTGTCTACTAGCACAAACATAATAAGCGTGTGGCAGCAATCGCAAACTGCAACCATTCCTCACATGTTCGCATCCATTTGCGAACATGCTGAACATACCATTTAACAAAAGGAAACCATCTCCCCATTCACCCCGTTAAGGATAGGTTTGGAACAGCAGGGCAACGTCATTCGGCAGCAACACGCGATTGTTCAAGGGAGAGAGAAAACAAACAAACAATTGGGTGACCAAGTCGCGAAATTATGCAAACAATTTAATCGAAGCACAGACACACATAAACAAAACAAAAAGGAAT AAAAAAATAACAACCACACACTCTTCACTACTCTAAATGTGTAAAAGCTCCGCGAGATTCGAGATTGTACTGTGTGAAACNTTGGAACNATGTGA ] [+] EMBL BX624964 [ AAAATCTAAACTCTACATATGCACTCACGTACGAACGCAACAAAGAAACAAACAAAAAATACTAGATGTCAAATTCGAGAGCAAACTCATACTAATAAATACAACAAAAGAAGAAAAAAGAAACACACAAACACACATAAAGAAGAGAAAATAATCATTCTTGCACAAGTTTAACTGGTGTCTACTAGCACAAACATAATAAGCGTGTGGCAGCAATCGCAAACTGCAACCATTCCTCACATGTTCGCATCCATTTGCGAACATGCTGAACATACCATTTAACAAAAGGAAACCATCTCCCCATTCACCCCGTTAAGGATAGGTTTGGAACAGCAGGGCAACGTCATTCGGCAGCAACACGCGATTGTTCAAGGGAGAGAGAAAACAAACAAACAATTGGGTGACCAAGTCGCGAAATTATGCAAACAATTTAATCGAAGCACAGACACACATAAACAAAACAAAAAGGAATAAAAAAAATAACAACCACACACTCTTCACTACTCTAAATGTGTAAAAGCTCCGCGAGATTCGAGATTGTACTGTGTGAAACTTTGGAACGATGTGACAGAAAAGGGGAAAGCAAAAGAAGAAAACGTGCGTTTTCGGTAGTGCTCCAATGCTAATGGTGTGGCTAAAGAAAGATTATTGTGCACACGTATAACTATA TTTAAACGCTATCTCG TAAAACT GAAATCCCGC TGAACTCTCCTAAACAGAACAACCAAAAAG ] [+] EMBL AL694771 [ ccgcaggttAACAAAAGAAGAAAAAAGAAACACACAAACACACATAAAGAAGAGAAAATAATCATTCTTGCACAAGTTTAACTGGTGTCTACTAGCACAAACATAATAAGCGTGTGGCAGCAATCGCAAACTGCAACCATTCCTCACATGTTCGCATCCATTTGCGAACATGCTGAACATACCATTTAACAAAAGGAAACCATCTCCCCATTCACCCCGTTAAGGATAGGTTTGGAACAGCAGGGCAACGTCATTCGGCAGCAACACGCGATTGTTCAAGGGAGAGAGAAAACAAACAAACAATTGGGTGACCAAGTCGCGAAATTATGCAAACAATTTAATCGAAGCACAGACACACATAAACAAAACAAAAAGGAATAAACAAAATAACAACCACACACTCTTCACTACTCTAAATGTGTAAAAGCTCCGCGAGATTCGAGATTGTACTGTGTGAAACTTTGGAACGATGTGACAGAAAAGGGGAAAGCAAAAGAAGAAAACGTGCGTTTTCGGTAGTGNTCCAATGCTAATGGTGTGGGTAAAGAAAGATTATTGTGCACACGTATTACTATACTTTAAACGCTATCTCGTTAAAACTGGAAATCCCGCGTGAACTCTCCTAAACAGAACAACCAAAAAGAAGACGAAGAACACAAAAGAAACAAGCAAAACACANAGGAACTAAGACAATCCAAATTGCATCTCTCCCCCCA ] [+] EMBL BX625657 [ TGTGGCANCAATCNCAAACTGCAACCATTCCTCANATGTTCGCATCCATTTGng ] [+] EMBL BX627715 [ ACTCTAAATGTGTAAAAGCTCCGCGAGATTCGAGATTGTACTGTGTGAAACTTTGGAACGATGTGACAGAAAAGGGGAAAGCAAAAGAAGAAAACGTGCGTTTTCGGTAGTGCTCCAATGCTAATGGTGTGGCTAAAGAAAGATTATTGTGCACACGTATAACTATA TTTAAACGCTATCTCG TAAAACT GAAATCCCGC TGAACTCTCCTAAACAGAACAACCAAAAAGAAGACGAAGAA AAAAAAAACCAG AAAA AAAAAAGAACTAAGACAACTCAAATTGCATCTCTCCCCCCACTTGTCTGTCTGTCCACCTGATTCATGTTTAAGAGCGTGTGTCCAAGCAAGCCGTGCGCGTGCGGCTCGTAGTGAAAAAGAGGCGGCGTTAGCAGGCGGTTTAAAGGGCTACAAAATTAAGTCATAATAGAGAGCATGTGTGATGTTGATGGGATGTTTTTTCCGTTTTTTTCGATATTTAAATAATAATAATTATAATAATAATATAAAACAGAGCATTACTGGAGACAGGTACACAGCAAG] consensusID : consensus_8158#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 722 fasta sequence [CAGATCGCCCAGGTTTAAACGAAGAAAAAAAAAACAAGAAAAAAAAAGAACTAAGTACAACTCAAATTGCATCTCTCCCCCCANTTGTCTGTCTGTCCACCTGGATTCATGTTTAAGAGCGTGTGTCCAAGCAAGCCGTGCGCGTGCGGTCGTAGTGAAAAAGAGGCGGCGTTAGCAGGCGGTTTAAAGGGCTACAAAATTAAGTCATAATAGAGAGCATGTGTGATGTTGATGGGATGTTTTATTCCGTTTTTTTCGATATTTAAATAATAATAATTATAATAATAATATAAGAACAGAGCATTACGTGGAGACAGGTACACAGCAAGAACAGCAACAACAACACACAANAAACAACAACAAACNACGAACACAANAACTTCACAGCATATTCGTANACCAAAGCANNACGAAGAAACACAAAATATATTCTTCCGCTGGTTGTANATTCCTCTATCGGATNCAGGAATACGTACGTCAAGATCGGAAGCTCAACCTCCGAACCTNCGTATGTGCCCTGCCGANCTCTGGGTTTANCAAGGAATCGGACACGTTTACACCCTTCCCGGNACTATGATAACGNTCTCGCCCGCAAGCGGTCACTCTAACNTAAGGTCCCCTCCCTCCNNTGGAGCNAGACCCCACCCATACATCACTAACCCCGCCACCCCGCACAGGTCTNGGACACCTCCGAGTCTCGCGGCAACGCGCCGCCCACAGCA] [+] EMBL AL695839 [CAGATCGCCCAGGTTTAAACGAAGAAAAAAAAAACAAGAAAAAAAAAGAACTAAGTACAACTCAAATTGCATCTCTCCCCCCANTTGTCTGTCTGTCCACCTGGATTCATGTTTAAGAGCGTGTGTCCAAGCAAGCCGTGCGCGTGCGGTCGTAGTGAAAAAGAGGCGGCGTTAGCAGGCGGTTTAAAGGGCTACAAAATTAAGTCATAATAGAGAGCATGTGTGATGTTGATGGGATGTTTTATTCCGTTTTTTTCGATATTTAAATAATAATAATTATAATAATAATATAAGAACAGAGCATTACGTGGAGACAGGTACACAGCAAGAACAGCAACAACAACACACAANAAACAACAACAAACNACGAACACAANAACTTCACAGCATATTCGTANACCAAAGCANNACGAAGAAACACAAAATATATTCTTCCGCTGGTTGTANATTCCTCTATCGGATNCAGGAATACGTACGTCAAGATCGGAAGCTCAACCTCCGAACCTNCGTATGTGCCCTGCCGANCTCTGGGTTTANCAAGGAATCGGACACGTTTACACCCTTCCCGGNACTATGATAACGNTCTCGCCCGCAAGCGGTCACTCTAACNTAAGGTCCCCTCCCTCCNNTGGAGCNAGACCCCACCCATACATCACTAACCCCGCCACCCCGCACAGGTCTNGGACACCTCCGAGTCTCGCGGCAACGCGCCGCCCACAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8158#0 GCGGATGCAGAACCCCCCTCCCGGCACGGCACTAATGTTCTTCATTCTTCGATATTTGTA 60 consensus_8158#1 ------------------------------------------------------------ consensus_8158#0 ACGACCACGCTGGACGATTTGTTGTACATAATTGTTAACGCAAACTTCTAGTCAAGTTGT 120 consensus_8158#1 ------------------------------------------------------------ consensus_8158#0 TTCCTTATTATTGTTTGCGAACTTTACGTTCAACAAACACGTTCCACGGTGAAACAACGC 180 consensus_8158#1 ------------------------------------------------------------ consensus_8158#0 CCTACAAATCGATTGAAATGAATGCGACGAAAGCAATCGTTAGCGCTGAAGAAATATCGA 240 consensus_8158#1 ------------------------------------------------------------ consensus_8158#0 CCGTGTGTGTCCGACCTATTGTTTTGTGGAATGAAGCTGAAATGAAACGGAACATTCACG 300 consensus_8158#1 ------------------------------------------------------------ consensus_8158#0 GCTAAGCTGCAATCGAACTTACGGTTCGTGCGCAAGAAGACAGGCCAGCTTGAGAAGGGA 360 consensus_8158#1 ------------------------------------------------------------ consensus_8158#0 AACATTTAACATTGTAGTAACATAAAATGGTAATCATAAAACAGCAAACTGCACCGAGCG 420 consensus_8158#1 ----------------------------------CAGATCGCCCAGGTTTAAACGAAGAA 26 ** * * * ** ** consensus_8158#0 ATGAGATAGACGCAAACATTGAAACTAAGAGCACTACTGTTGATATATTTCTATTACGCA 480 consensus_8158#1 AAAAAAAACAAGAAAAAAAAAGAACTAAGTACAACTCAAATTGCATCTCTCC-CCCCANT 85 * * * * * * *** * ******* ** * * ** * ** * consensus_8158#0 GAACCAGAACCCCCCCCCCCTCCACCCCCCAAATCACACACACAT-CTCCCCATATCCCC 539 consensus_8158#1 TGTCTGTCTGTCCACCTGGATTCATGTTTAAGAGCGTGTGTCCAAGCAAGCCGTGCGCGT 145 * ** ** * ** * * * ** * ** * * consensus_8158#0 GCGCTCCAACATAGAGTATGTTGCCCTCAACTAGTTATT--GCGGGTGAAAATATAGGCG 597 consensus_8158#1 GCGGTCGTAGTGAAAAAGAGGCGGCGTTAGCAGGCGGTTTAAAGGGCTACAAAATTAAGT 205 *** ** * * * * * * * * * * ** *** * ** ** consensus_8158#0 CAAAATACGTCAGA-ATGCTAAAACGA-AACATGTTTAAATGGATAAGCGAATGGAACAA 655 consensus_8158#1 CATAATAGAGAGCATGTGTGATGTTGATGGGATGTTTTATTCCGTTTTTTTCGATATTTA 265 ** **** * ** * ** ****** * * * * * consensus_8158#0 AGAAACAAAAGAAAAGAACATTAAAATCTAAACTCTACATATGCACTCACGTACGAACGC 715 consensus_8158#1 AATAATAATA-ATTATAATAATAATATAAGAACAGAGCAT-TACGTGGAGACAGGTACAC 323 * ** ** * * * ** * *** ** *** *** * * * * * ** * consensus_8158#0 AACAAAGAAACAAACAAAAAATACTAGATGTCAAATTCGAGAGCAAACTCATACTAATAA 775 consensus_8158#1 AGCAAGAACAGCAACAACAA----CACACAANAAA--CAACAACAAACN-------ACGA 370 * *** * * ***** ** * * *** * * * ***** * * consensus_8158#0 ATACAACAAAAGAAGAAAAAAGAAACACACAAACACACATAAAGAAGAGAAAATAATCAT 835 consensus_8158#1 ACACAANAACTTCACAGCATATTCGTANACCAAAGCANNACGAAGAAACACAAAATATAT 430 * **** ** * * * * * ** ** ** * * * * ** * ** consensus_8158#0 TCTTGCACAAGTTTAACTGGTGTCTACTAGCACAAACATAATAAGCGTGTGGCAGCAATC 895 consensus_8158#1 TCTTCCGCTGGTTG---TANATTCCTCTATCGGATNCAGGA-ATACGTACGTCAA-GATC 485 **** * * *** * ** *** * * ** * * *** * ** *** consensus_8158#0 GCAAACTGCAACCATTCCTCACATGTTCGCATCCATTTGCGAACATGCTGAACATACCAT 955 consensus_8158#1 GGAAGCT-CAACC--TCCGAACCTNCGTATGTGCCCTGCCGANCT--CTGGGTTTANCA- 539 * ** ** ***** *** ** * * * * *** * *** ** ** consensus_8158#0 TTAACAAAAGGAAACCATCTCCCCATTCACCCCGTTAAGGATAGGTTTGGAACAGCAGGG 1015 consensus_8158#1 --AGGAATCGGACACGTTTACACCCTTCCCGGNACTATGATAACGNTCTCGCCCGCAAGC 597 * ** *** ** * * ** *** * ** * * * * * *** * consensus_8158#0 CAACGTCATTCGGCAGCAACACGCGATTGTTCAAGGGAGAGAGAAAACAAACAAACAATT 1075 consensus_8158#1 GGTCAC--TCTAACNTAAGGTCCCCTCCCTCCNNTGGAGCNAGACCCCACCCATACA--- 652 * * * * * * * * **** *** ** ** *** consensus_8158#0 GGGTGACCAAGTCGCGAAATTATGCAAACAATTTAATCGAAGCACAGACACACATAAACA 1135 consensus_8158#1 ---TCACTAA-CCCCGCCACCCCGCACAGGTCTNGGACACCTCCGAGTCTCGCGGCAACG 708 * ** ** * ** * *** * * * * ** * * * *** consensus_8158#0 AAACAAAAAGGAATAAAAAAAATAACAACCACACACTCTTCACTACTCTAAATGTGTAAA 1195 consensus_8158#1 CGCCGCCCAC-AGCA--------------------------------------------- 722 * * * * consensus_8158#0 AGCTCCGCGAGATTCGAGATTGTACTGTGTGAAACTTTGGAACGATGTGACAGAAAAGGG 1255 consensus_8158#1 ------------------------------------------------------------ consensus_8158#0 GAAAGCAAAAGAAGAAAACGTGCGTTTTCGGTAGTGCTCCAATGCTAATGGTGTGGCTAA 1315 consensus_8158#1 ------------------------------------------------------------ consensus_8158#0 AGAAAGATTATTGTGCACACGTATAACTATATTTAAACGCTATCTCGTAAAACTGAAATC 1375 consensus_8158#1 ------------------------------------------------------------ consensus_8158#0 CCGCTGAACTCTCCTAAACAGAACAACCAAAAAGAAGACGAAGAAAAAAGAAACAAGAAA 1435 consensus_8158#1 ------------------------------------------------------------ consensus_8158#0 AACANAGGAACTAAGACAATCCAAATTGCATCTCTCCCCCCACTTGTCTGTCTGTCCACC 1495 consensus_8158#1 ------------------------------------------------------------ consensus_8158#0 TGATTCATGTTTAAGAGCGTGTGTCCAAGCAAGCCGTGCGCGTGCGGCTCGTAGTGAAAA 1555 consensus_8158#1 ------------------------------------------------------------ consensus_8158#0 AGAGGCGGCGTTAGCAGGCGGTTTAAAGGGCTACAAAATTAAGTCATAATAGAGAGCATG 1615 consensus_8158#1 ------------------------------------------------------------ consensus_8158#0 TGTGATGTTGATGGGATGTTTTTTCCGTTTTTTTCGATATTTAAATAATAATAATTATAA 1675 consensus_8158#1 ------------------------------------------------------------ consensus_8158#0 TAATAATATAAAACAGAGCATTACTGGAGACAGGTACACAGCAAG 1720 consensus_8158#1 --------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||