These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8172#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 847 fasta sequence [CCGGAGGTGGCGGGCCAATCGCGGGCGGTCGGGCTCGGTCCGCTCGGCCTGTCCGGCAACACGGCGTACTTTGGCCTGCTCGAGATTTGCAAACCGAAGCCGGGCGAAACGGTGGTGGTGAGTGCGGCGGCCGGTGCCGTCGGCAGCCTGGTCGGCCAGATCGCGAAGATTAAGGGCTGCCACGTGGTGGGGCTGGCCGGCACGGAGGAAAAGTGCGGGTGGCTGCGCGAGCTCGGCTTCGACGCGGTCGTCAACTATCGGGCCGGATCGGTGCGGGAGCAGCTGGCCGCGGCAACGCCCCGCGGCGTCGACTGCTACTTCGACAACGTGGGCGGCGAGCTGACGGAGCTGGTGCGCGAGCGCATGAACCTGTACGGGCGCATCTCGGTGTGCGGCGCCGTTTCGAGCTACAACGGGCAGCCGGCCCAGGTGGCCGACCCGCAGCGCGACTACGTCTCGAAGCAGCTCCGGCAGGAAGGGTTCGTCGTCTTCCGGTGGCTGCCCCGCTGGATGGAGGGCATCGGCCAGATGCGCGAATGGCTCGAGCAGGGCAAGCTGGTCCACCGGGAAACCGTGTACGAGGGGTTCGACAGTGCGCCGCGCTCGTTCATCAGCATGCTGCAGGGCGGCAACATTGGCAAGGCGGTCGTGAAGGTGTAGTGCGCGCCCCGCCCTACCGCTGTCGCTCTTTGCACGGGGGCGCCGGCTCGTTCCCTCCGCCGTGGTACCGCCGGCAGTGGTTCTTCAGCAGACACTTGTACTGGAAGCGCTTGTCGCAGTCGGCGCACGGGTACGGCTTGTCGTTCGTGTGGATGCGCATGTGAACCCGGAGCGTGTACGCGATCGT] [+] EMBL BX617583 [CCGGAGGTGGCGGGCCAATCGCGGGCGGTCGGGCTCGGTCCGCTCGGCCTGTCCGGCAACACGGCGTACTTTGGCCTGCTCGAGATTTGCAAACCGAAGCCGGGCGAAACGGTGGTGGTGAGTGCGGCGGCCGGTGCCGTCGGCAGCCTGGTCGGCCAGATCGCGAAGATTAAGGGCTGCCACGTGGTGGGGCTGGCCGGCACGGAGGAAAAGTGCGGGTGGCTGCGCGAGCTCGGCTTCGACGCGGTCGTCAACTATCGGGCCGGATCGGTGCGGGAGCAGCTGGCCGCGGCAACGCCCCGCGGCGTCGACTGCTACTTCGACAACGTGGGCGGCGAGCTGACGGAGCTGGTGCGCGAGCGCATGAACCTGTACGGGCGCATCTCGGTGTGCGGCGCCGTTTCGAGCTACAACGGGCAGCCGGCCCAGGTGGCCGACCCGCAGCGCGACTACGTCTCGAAGCAGCTCCGGCAGGAAGGGTTCGTCGTCTTCCGGTGGCTGCCCCGCTGGATGGAGGGCATCGGCCAGATGCGCGAATGGCTCGAGCAGGGCAAGCTGGTCCACCGGGAAACCGTGTACGAGGGGTTCGACAGTGCGCCGCGCTCGTTCATCAGCATGCTGCAGGGCGGCAACATTGGCAAGGCGGTCGTGGAGGTGTAGTGCGCGCCCCGCCCTACCGCTGTCGCTCTTTGCACCGGGGCGCCGGCTCGTTCCCTCCGCCGTGGTACCGCCGGCAGTGGTTCTTC ] [+] EMBL BX610411 [ CTGACGGAGCTGGTGCGCGAGCGCATGAACCTGTACGGGCGCATCTCGGTGTGCGGCGCCGTTTCGAGCTACAACGGGCAGCCGGCCCAGGTGGCCGACCCGCAGCGCGACTACGTCTCGAAGCAGCTCCGGCAGGAAGGGTTCGTCGTCTTCCGGTGGCTGCCCCGCTGGATGGAGGGCATCGGCCAGATGCGCGAATGGCTCGAGCAGGGCAAGCTGGTCCACCGGGAAACCGTGTACGAGGGGTTCGACAGTGCGCCGCGCTCGTTCATCAGCATGCTGCAGGGCGGCAACATTGGCAAGGCGGTCGTGAAGGTGTAGTGCGCGCCCCGCCCTACCGCTGTCGCTCTTTGCACGGGGGCGCCGGCTCGTTCCCTCCGCCGTGGTACCGCCGGCAGTGGTTCTTCAGCAGACACTTGTACTGGAAGCGCTTGTCGCAGTCGGCGCACGGGTACGGCTTGTCGTTCGTGTGGATGCGCATGTGAACCCGGAGCGTGTACGCGATCGT] [-] EMBL CNS08ZLB [ CTGCAGGGCGGCAACATCGGCAAGGCGGTCGTGAAGGTGTTGTGCGCGCCCCGCCCTATCCCTGTCGCTCTTTGCACGGGGGCGCCGGCTCGTTCCCTCCGCCGTGGTCCCGCCGGCAGTGGTTCTTCGGCAGACACTTG ] consensusID : consensus_8172#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 813 fasta sequence [CCGGACGTGCGTGAACGGTTTCTGGCCAAAGTCTCGCTCCCGATTACATCGTACGCGACCAGCAGGATCCTAAGAAGGGGTCAAAGTACAGCACAAGTC--ACGGGAGTGTCCGCAAGCAAAGGATGGTGCTGGCAAGGAAGTGGATGTACGTGCGGCGCCCGGAAGGGGAACCGAAGGAGACCGATTTCGCGCTCAAGGAGGAGGAGCTGCCGGCCCTCGAGGCGGAAGATTTCCTCGTCGAGACGGAGTACTTCAGCCTGGATGCGGGACTGCGCGGGTACATGGAGCTCGGGGCCCTGCCCGTCGGCAGCCCCGTCATCGGGATGGCCCTCGCGAAGGTGATCGAGTCGCGGAACGCCCAGTTCCCGGTCGGTGCGGTCGTCTGTGCCCGGCTCGGCTGGGTCACGCACGCCGTCCTGAACCAGCAGCAGCAGAAGGAGCTGCGGCCGTACATCG-TGCCGGAGG-TGGCGGGCCAATCGCGGGCGGTCGGGCTCGGTCCGCTCGGCCTGTCCGGCAACACGGCGTAC-TTTGGCCTGCTCGAGATTTGCAAACCGAAGCCGGGCGAAACGGTGGTGGTGAGTGCGGCGGCCGGTGCCGTCGGCAGCCTGGTCGGCCAGATCGCGAAGATTAAGGGCTGCCACGTGGTGGGGCTGGCCGGCACGGAGGAAAAGTGCGGGTGGCTGCGCGACTCGGCTTCGACGCGGTCGTCAACTATCGGGCCGGATCGGTGCGGGACAGCTGGCCGCGGCAACGCCCGCGGCGTTCCACCGGGAAACCGTGTACGAGGGGTTCGACAGTTCGCCGCGCTCGTTC] [+] EMBL BM594816 [CCGGACGTGCGTGAACGGTTTCTGGCCAAAGTCTCGCTCCCGATTACATCGTACGCGACCAGCAGGATCCTAAGAAGGGGTCAAAGTACAGCACAAGTC ACGGGAGTGTCCGCAAGCAAAGGATGGTGCTGGCAAGGAAGTGGATGTACGTGCGGCGCCCGGAAGGGGAACCGAAGGAGACCGATTTCGCGCTCAAGGAGGAGGAGCTGCCGGCCCTCGAGGCGGAAGATTTCCTCGTCGAGACGGAGTACTTCAGCCTGGATGCGGGACTGCGCGGGTACATGGAGCTCGGGGCCCTGCCCGTCGGCAGCCCCGTCATCGGGATGGCCCTCGCGAAGGTGATCGAGTCGCGGAACGCCCAGTTCCCGGTCGGTGCGGTCGTCTGTGCCCGGCTCGGCTGGGTCACGCACGCCGTCCTGAACCAGCAGCAGCAGAAGGAGCTGCGGCCGTACATCG TGCCGGAGG TGGCGGGCCAATCGCGGGCGGTCGGGCTCGGTCCGCTCGGCCTGTCCGGCAACACGGCGTAC TTTGGCCTGCTCGAGATTTGCAAACCGAAGCCGGGCGAAACGGTGGTGGTGAGTGCGGCGGCCGGTGCCGTCGGCAGCCTGGTCGGCCAGATCGCGAAGATTAAGGGCTGCCACGTGGTGGGGCTGGCCGGCACGGAGGAAAAGTG ] [+] EMBL AL694268 [ AAAGT T GCTCCCGATTACATCGTACGCGA CAGCAGGATCCTAAGAAGGGGTCAAAGTACAGCACAAGTC ACGGGAGTGT CGCAAGCAAAGGATGGTGCTGGCAAGGAAGTGGATGTACGTGCGGCGCCCGGAAGGGGAACCGAAGGAGACCGATTTCGCG ] [+] EMBL CNS08JAX [ ATCGTACGCGACCAGCAGGATCCTAAGAAGGGGTCAAAGTACAGCACAAGTC ACGGGAGTGTCCGCAAGCAAAGGATGGTGCTGGCAAGGAAGTGGATGTACGTGCGGCGCCCGGAA GGGAACCGAA GAGACCGATTTCGCGCTCAAGGAGGAGGAGCTGCCGGCCCTCGAGGCGGAAGATTTCCTCGTCGAGACGGAGTACTTCAGCCTGGATGCGGGACTGCGCGGGTACATGGAGCTCGGGGCTCTG CCGTCGGCAGCCCCGTCATCGGGATGGCCCTCGCGAAGGTGATCGAGTTGCGGAACGCCCAGTTCCCGGTCGGTGCGGTCGTCTGTGCCCGGCTCGGCTGGGTCACTCACGCCGTCCTGAAGCAGCAGCAGCAGAAGGAGCTGCGGCCGTACATCGTTGCCGGAGGTTGGCGGGCCAATCGCGGGCGGTCGGGCTCGGTCCGCTCGGCCTGTTCGGCAACACGGCGTAC TTTGGCCTGCTCGAGATTTGCAAATCGAAGCCGGGCGAAACGGTGGTGGTGAGTTCGGCGGCCGGTGCCGTCGGCAGCCTGGTCGGCCAGATCGCGAAGATTAAGGGCTGCCACGTGGTGGGGCTGGCCGGCAC GAGGAAAATTGCGGGTGGCTGCGCGACTCGGCTTCGACGCGGTCGTCAACTATCGGGCCGGATCGGTGCGGGACAGCTGGCCGCGGCAACGCCCGCGGCGTTCCACCGGGAAACCGTGTACGAGGGGTTCGACAGTTCGCCGCGCTCGTTC] [+] EMBL BM642941 [ ccgccCACGCGTCCGACGGAAGTGTCCGCAAGCAAAGGATGGTGCTGGCAAGGAAGTGGATGTACGTGCGGCGCCCGGAAGGGGAACCGAAGGAGACCGATTTCGCGCTCAAGGAGGAGGAGCTGCCGGCCCTCGAGGCGGAAGATTTCCTCGTCGAGACGGAGTACTTCAGCCTGGATGCGGGACTGCGCGGGTACATGGAGCTCGGGGCCCTGCCCGTCGGCAGCCCCGTCATCGGGATGGCCCTCGCGAAGGTGATCGAGTCGCGGAACGCCCAGTTCCCGGTCGGTGCGGTCGTCTGTGCCCGGCTCGGCTGGGTCACGCACGCCGTCCTGAACCAGCAGCAGCAGAAGGAGCTGCGGCCGTACATCG TGCCGGAGG TGGCGGGCCAATCGCGGGCGGTCGGGCTCGGTCCGCTCGGCCTGTCCGGCAACACGGCGTAC TTTGGCCTGCTCGAGATTTGCAAACCGAAGCCGGGCGAAACGGTGGTGGTGAGTGCCGCGGCCGGTGCCGTCGGCAGCCTGGTCGGCCAGATCGCGAAGATTAAGGGCTGCCACGTGGTGGGGCTGGCCGGC ] [+] EMBL BX602939 [ TACGTGCGGCGCCCGGAAGGGGAACCGAAGGAGACCGATTTCGCGCTCAAGGAGGAGGAGCTGCCGGCCCTCGAGGCGGAAGATTTCCTCGTCGAGACGGAGTACTTCAGCCTGGATGCGGGACTGCGCGGGTACATGGAGCTCGGGGCCCTGCCCGTCGGCAGCCCCGTCATCGGGATGGCCCTCGCGAAGGTGATCGAGTCGCGGAACGCCCAGTTCCCGGTCGGTGCGGTCGTCTGTGCCCGGCTCGGCTGGGTCACGCACGCCGTCCTGAACCAGCAGCAGCAGAAGGAGCTGCGGCCGTACATCG TGCCGGAGG TGGCGGGCCAATCGCGGGCGGTCGGGCTCGGTCCGCTCGGCCTGTCCGGCAACACGGCGTACTTTTGGCCTGCTCG ] [+] EMBL CNS08ZLA [ GTGCCCGGCTCGGCTGGGTCACTCACGCCGTCCTGAAGCAGCAGCAGCAGAAGGAGCTGCGGCCGTACATCG TGCCGGAGG TGGCGGGCCAATCGCGGGCGGTCGGGCTCGGTCCGCTCGGCCTGTCCGGCAACACGGCGTAC TTTGGCCTGCTCGAGATTTGCAAACCGAAGCCGGGCGAAACGGTGGTGGTGAGTACGGCGGCCGGTGCCGTCGGCAGCCTGGTCGGCCAGATCGCGAAGATTAAGGGCTGCCACGTGGTGGGGCTGGCCGGCACGGAGGAAAAGTGCGGGTGGCTGCGCGACTCGGCTTCGAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8172#0 CCGGAGGTGGCGGGCCAATCGCGGGCGGTCGGGCTCGGTCCGCTCGGCCTGTCCGGCAAC 60 consensus_8172#1 --------------CCGGACGTGCGTGAACGGTTTCTGGCCAAA-GTCTCGCTCCCGATT 45 ** ** * * * *** ** * ** * * * * * consensus_8172#0 ACGGCGTACTTTGGCCTGCTCGAGATTTGCAAACCGAAGCCGGGCGAAACGGTGGTGGTG 120 consensus_8172#1 ACATCGTACGC-GACCAGC--AGGATCCTAAGAAGGGGTCAAAGTACAGCACAAGTCACG 102 ** ***** * ** ** *** * * * * * * * ** * consensus_8172#0 AGTGCGGCGGCCGGTGCCGTCGGCAGCCTGGTCGGCCAGATCGCGAAGAT-TAAGGGCTG 179 consensus_8172#1 GGAGTGTCCGCAAGCAAAG--GATGGT---GCTGGCAAGGAAGTGGATGTACGTGCGGCG 157 * * * * ** * * * * * *** ** * * * * * * * consensus_8172#0 CCACGTGGTGGGGCTGGCCGGCACGGAGGAAAAGTGCGGGTGGCTGCGCGAGCTCGGCTT 239 consensus_8172#1 CCCGGAAGGGGAACCGAAGGAGACCGATTTCGCGCTCAAGGAGGAGGAGCTGCCGGCCCT 217 ** * * ** * * * ** ** * * * * * ** * * * consensus_8172#0 CGACGCGGTCGTCAACTATCGGGCCGGATCGGTGCGGGAGCAGCTGGCCGCGGCAACGCC 299 consensus_8172#1 CGAGGCGGAAG---ATTTCCTCGTCGAGACGGAGTACTTCAGCCTGGATGCGGGACTGCG 274 *** **** * * * * * ** *** * **** **** * ** consensus_8172#0 CCGCGGCGTCGACTGCTACTTCGACAACGTGGGCGGCGAGCTGACGGAGCTGGTGCGCGA 359 consensus_8172#1 CGGGTACATGGAGCTCGGGGCCCTGCCCGTCGGCAGCCCCGTCATCGGGATGGCCCTCGC 334 * * * * ** * * *** *** ** * * * * *** * ** consensus_8172#0 GCGCATGAACCTGTACGGGCGCATCTCGGTGTGCGGCGCCGTTTCGAGCTACAACGGGCA 419 consensus_8172#1 GAAGGTGATCGAGTCGCGGAACG-CCCAGTTCCCGGT--CGGTGCGGTCGTCTGTGCCCG 391 * *** * ** ** * * * ** *** ** * ** * * * * consensus_8172#0 GCCGGCCCAGGTGGCCGACCCGCAGCGCGACTACGTCTCGAAGCAGCTCCGGCAGGAAGG 479 consensus_8172#1 GCTCGGCTGGGTCACGCACGC-CGTCCTGA--ACCAGCAGCAGCAGAAGGAGCTGCGGCC 448 ** * * *** * ** * * * ** ** * ***** ** * consensus_8172#0 GTTCGTCGT-CTTCCGGTGGCTGCCCCGCTG--GATGGAGGGCATCGGCCAGATGCGCGA 536 consensus_8172#1 GTACATCGTGCCGGAGGTGGCGGGCCAATCGCGGGCGGTCGGGCTCGGTCCGCTCGGCCT 508 ** * **** * ****** * ** * * ** ** **** * * * ** consensus_8172#0 ATGGCTCGA-GCAGGGCAAGCTGGTCCACCGGGAAACCGTGTACGAGGGGTTCGACAGTG 595 consensus_8172#1 GTCCGGCAACACGGCGTACTTTGGCCTGCTCGAGATTTGCAAACC-GAAGCCGGGCGAAA 567 * * * * * * * *** * * * * * ** * * * * consensus_8172#0 CGCCGC--GCTCGTTCATCAGCATGCTGCAGGGCGGCAACATTGGCAAGGCGGTCGTGAA 653 consensus_8172#1 CGGTGGTGGTGAGTGCGGCGGC-CGGTGCCGT-CGGCAGCCTGGTCGGCCAGATCGCGAA 625 ** * * ** * * ** * *** * ***** * * * * * *** *** consensus_8172#0 GGTGTAGTGCGCGCCCCGCCCTACCGCTGTCGCTCTTTGCACGGGGGCGCCGGCTCGTTC 713 consensus_8172#1 GATTAAGGGC-TGCCACGTGGTGGGGCTGGCCGGCACGGAGGAAAAGTGCGGGTGGCTGC 684 * * ** ** *** ** * **** * * * * ** ** * * consensus_8172#0 CCTCCGCCGTGGTACCGCCGGCAGTGGTTCTTCAGCAGACACTTGTACTGGAAGCGCTTG 773 consensus_8172#1 GCGACTCGGCTTCGACGCGGTCGTCAACTATCGGGCCGG-ATCGGTGCGGGACA-GCTGG 742 * * * * *** * * * * ** * * ** * *** *** * consensus_8172#0 TCGCAGTCGGCGCACGGGTACGGCTTGTCGTTCGTGTGGATGCGCATGTGAACCCGGAGC 833 consensus_8172#1 CCGCGG-CAACGCCCG----CGGCGT-TCCACCGGGAAACCGTGTACGAGGGGTTCGACA 796 *** * * *** ** **** * ** ** * * * * * * ** consensus_8172#0 GTGTAC-GCGATCGT-- 847 consensus_8172#1 GTTCGCCGCGCTCGTTC 813 ** * *** **** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||