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Anopheles gambiae
cluster # 8189 cluster # 8189       Sequences # 9       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8189#0 length = 1189 sequences # 4  
consensus_8189#1 length = 798 sequences # 2  
consensus_8189#2 length = 541 sequences # 1  
consensus_8189#3 length = 506 sequences # 1  
consensus_8189#4 length = 454 sequences # 1  

consensusID : consensus_8189#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1189
fasta sequence
                              [CCGCAAGGGGGAAAAATACACGTGGCTTCCTTACTTCGATAAAAATGAGCCGTGCGAGCTGTACTGCAGTAACACGGAGGACACAGTGATCGTACCGTTTGGAGACACGGCGGCCGATGGCACCTTCTGCAACCTGGGTACGAACGACATGTGCATCGGCGGTATCTGTCGCAAGGTAGGTTGTGATTGGGTTGTCGACTCAAACACTACTGAGGATAGGTGTGGCGTTTGCGGCGGTACCGGTGACACTTGCTTCGTGAAGAAGGGCGAAATCAACAAGAAGATCAACACAACAGACGGTGTACACGATGTACTAATGATTCCCGCTGGAGCACGCAATGTGCTTATAGAGGAGATATTGCCGTCGAAAAATTTCATCGGCGTCGGTCGCTCCACTGGAAACGAGTGCTATCTTAATTGCAACCACTTCATTCAACTGCCTGGCGAGTACGAAGTAGCGAGCAGTCTGTGTCTATACGAGAGGGAAAACGAACAAGAACGACTCAAAATCCCTGGCCCTATCATGGAGGATGTGAATGTGTTTATCGTAATCAAGAAGAAGAACAATCAGGCAGGAATTCGCTACGAGTATACACTTCCTTCACACAACGGCAAAAACCAATCGGCGTACTACTGGAAGCTAACGGACTGGTCAGTTTGCTCGGCCACCTGCGGCGGAGGAAAACAGTTCCGTGAGTCAATATGTTATCATCGTGGCAAGGGAGTGGCTAAGGAGGAGCAGTGCCTGCGCCATGCATTTGGGAAGCGGCATGAACCGATTGCGCGAGACTGCAACGACGATCCGTGTCCGTTTAACTGGTGGGTTGGACCTTGGCAGCTATGCCCAATGACTTGCCGCAAGCCACACAAGCCTGTGCCGATACGGCGCAGATCGATTCTATGCGTTGATTCCAACTCCAACGCTCGACCGGATACGCATTGCAATAACAAGCCCCGACCACACGACAAGGAACCCTGCGGCGAGGAACTGCCCGTATGTCAAGAAAATCAGCGATCAGGCCAGGAAAACAGAACGTCCCGATACGATACCATTCGAAGAATTCNGGTCCCTCCGATCTTNCATCCCCGTCGACACCGGCTGACGACTATGAGGNGAACAACAACATCTG-AACAC-ACAATCGCGCGCCAGTGCGACCTTGGAGAGTGAATATGTTATATTAACATTTAT]

[+] EMBL BM646576             [CCGCAAGGGGGAAAAATACACGTGGCTTCCTTACTTCGATAAAAATGAGCCGTGCGAGCTGTACTGCAGTAACACGGAGGACACAGTGATCGTACCGTTTGGAGACACGGCGGCCGATGGCACCTTCTGCAACCTGGGTACGAACGACATGTGCATCGGCGGTATCTGTCGCAAGGTAGGTTGTGATTGGGTTGTCGACTCAAACACTACTGAGGATAGGTGTGGCGTTTGCGGCGGTACCGGTGACACTTGCTTCGTGAAGAAGGGCGAAATCAACAAGAAGATCAACACAACAGACGGTGTACACGATGTACTAATGATTCCCGCTGGAGCACGAAATGTGCTTATAGAGGAGATATTGCCGTCGAAAAATTTCATCGGCGTCGGTCGCTCCACTGGAAACGAGTGCTATCTTAATTGCAACCACTTCATTCAACTGCCTGGCGAGTACGAAGTAGCGAGCAGTCTGTGTCTATACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BX617359             [                                                                                                                                                                                                                                           GGTACCGGTGACACTTGCTTCGTGAAGAAGGGCGAAATCAACAAGAAGATCAACACAACCGACGGTGTACACGATGTACTAATGATTCCTGCTGGAGCACGCAATGTGCTTATAGAGGAGATATTGCCGTCGAAAAATTTCATCGGCGTTGGTCGCTCCACTGGAAACGAATGCTATCTTAATTGCAACCACTTCATTCAACTGCCCGGCGAGTACGAAGTAGCGAGCAGTCTGTGTCTATACGAGAGGGAAAACGAACAAGAACGACTCAAAATCCCTGGCCCTATCATGGAGGATGTGAATGTGTTTATCGTAATCAAGAAGAAGAACAATCAGGCAGGAATTCGCTACGAGTATACACTTCCTTCACACAACGGCAAAAACCAATCGGCGTACTACTGGAAGCTAACGGACTGGTCAGTTTGCTCGGCCACCTGCGGCGGAGGAAAACAGTTCCGTGAGTCAATATGTTATCATCGTGGCAAGGGAGTGGCTAAGGAGGAGCAGTGCCTGCGCCATGCATTTGGGAAGCGGCATGAACCGATTGCGCGAGACTGCAACGACGATCCGTGTCCGTTTAACTGGTGGGTTGGACCTTGGCAGCTATGCCCAATGACTTGCCGCAAGCCACACAAGCCTGTGCCGATACGGCGCAGATCGATTCTATGCGTTGATTCCAACTCCAACGCTCGACCGG                                                                                                                                                                                                                                                                   ]
[+] EMBL BX626711             [                                                                                                                                                                                                                                                                                                                                            CACGCAATGTGCTTATAGAGGAGATATTGCCGTCGAAAAATTTCATCGGCGTCGGTCGCTCCACTGGAAACGAGTGCTATCTTAATTGCAACCACTTCATTCAACTGCCTGGCGAGTACGAAGTAGCGAGCAGTCTGTGTCTATACGAGAGGGAAAACGAACAAGAACGGCTCAAAATTCCAGGCCCTATCATGGAGGATGTAAATGTGTTTATCGTAATCAAGAAGAAGAACAATCAGGCAGGAATACGCTACGAGTATACACTTCCTTCACACAACGGCAAAAACCAATCGGCGTACTACTGGAAGCTAACGGACTGGTCAGTTTGCTCGGCCACCTGCGGCGGAGGAAAACAGTTCCGTGAGTCAATATGTTATCATCGTGGCAAGGGAGTGGCTAAGGAGGAGCAGTGCCTGCGACATGCATTTGGGAAGCGGCATGAACCGATTGCGCGAGACTGCAACGACGATCCGTGTCCGTTTAACTGGTGGGTTGGACCTTGGCAGCTATGCCCAATGACTTGCCGCAAGCCACACAAGCCTGTGCCGATACGGCGCAGATCGATTCTATGCGTTGATTCCAACTCCAACGCTCGACCGGATACGCATTGCAATAACAAGCCCCGACCACACGACAAGGAACCCTGCGGCGAGGAACTGCCCGTATGTCAAGAAAATCAGCGATCAGGCCAGGAAAACAGAACGTCCCGATACGATACCATTCGAAGAATTCNGGTCCCTCCGATCTTNCATCCCCGTCGACACCGGCTGACGACTATGAGGNGAACAACAACATCTG AACAC ACAATCGCGCGC                                          ]
[+] EMBL BM641280             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ccgGGATGTGAATGTGTTTATCGTAATCAAGAAGAAGAACAATCAGGCAGGAATTCGCTACGAGTATACACTTCCTTCACACAACGGCAAAAACCAATCGGCGTACTACTGGAAGCTAACGGACTGGTCAGTTTGCTCGGCCACCTGCGGCGGAGGAAAACAGTTCCGTGAGTCAATATGTTATCATCGTGGCAAGGGAGTGGCTAAGGAGGAGCAGTGCCTGCGCCATGCATTTGGGAAGCGGCATGAACCGATTGCGCGAGACTGCAACGACGATCCGTGTCCGTTTAACTGGTGGGTTGGACCTTGGCAGCTATGCCCAATGACTTGCCGCAAGCCACACAAGCCTGTGCCGATACGGCGCAGATCGATTCTATGCGTTGATTCAAACTCCAACGCTCGACCAGATACTCATTGCAATAACAAGCCCCGACCACACGACAAGGAACCCTGCGGCGAGGAACTGCCCGTATGTCAAGAAAATCAGCGATCAGGCCAGG AAACAGAACGTCCCGATACGATACCATTCGAAGAATTC GGTCCCTCCGATCTTCCATCCCCGTCGACACCGGCTGACGACTATGAGGTGAACAACAACATCTGAAACACAACAATCGCGCCGCAGTGCGACCTTGGAGAGTGAATATGTTATATTAACATTTAT]


>consensus_8189#0 CCGCAAGGGGGAAAAATACACGTGGCTTCCTTACTTCGATAAAAATGAGCCGTGCGAGCT GTACTGCAGTAACACGGAGGACACAGTGATCGTACCGTTTGGAGACACGGCGGCCGATGG CACCTTCTGCAACCTGGGTACGAACGACATGTGCATCGGCGGTATCTGTCGCAAGGTAGG TTGTGATTGGGTTGTCGACTCAAACACTACTGAGGATAGGTGTGGCGTTTGCGGCGGTAC CGGTGACACTTGCTTCGTGAAGAAGGGCGAAATCAACAAGAAGATCAACACAACAGACGG TGTACACGATGTACTAATGATTCCCGCTGGAGCACGCAATGTGCTTATAGAGGAGATATT GCCGTCGAAAAATTTCATCGGCGTCGGTCGCTCCACTGGAAACGAGTGCTATCTTAATTG CAACCACTTCATTCAACTGCCTGGCGAGTACGAAGTAGCGAGCAGTCTGTGTCTATACGA GAGGGAAAACGAACAAGAACGACTCAAAATCCCTGGCCCTATCATGGAGGATGTGAATGT GTTTATCGTAATCAAGAAGAAGAACAATCAGGCAGGAATTCGCTACGAGTATACACTTCC TTCACACAACGGCAAAAACCAATCGGCGTACTACTGGAAGCTAACGGACTGGTCAGTTTG CTCGGCCACCTGCGGCGGAGGAAAACAGTTCCGTGAGTCAATATGTTATCATCGTGGCAA GGGAGTGGCTAAGGAGGAGCAGTGCCTGCGCCATGCATTTGGGAAGCGGCATGAACCGAT TGCGCGAGACTGCAACGACGATCCGTGTCCGTTTAACTGGTGGGTTGGACCTTGGCAGCT ATGCCCAATGACTTGCCGCAAGCCACACAAGCCTGTGCCGATACGGCGCAGATCGATTCT ATGCGTTGATTCCAACTCCAACGCTCGACCGGATACGCATTGCAATAACAAGCCCCGACC ACACGACAAGGAACCCTGCGGCGAGGAACTGCCCGTATGTCAAGAAAATCAGCGATCAGG CCAGGAAAACAGAACGTCCCGATACGATACCATTCGAAGAATTCNGGTCCCTCCGATCTT NCATCCCCGTCGACACCGGCTGACGACTATGAGGNGAACAACAACATCTGAACACACAAT CGCGCGCCAGTGCGACCTTGGAGAGTGAATATGTTATATTAACATTTAT



consensusID : consensus_8189#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 798
fasta sequence
                              [GGCCAGAATCGGCACGATGGGTGAAGAAGGGCGAAATCAACAAGAAGATCAACACAACCGACGGTGTACACGATGTACTAATGATTCCTGCTGGAGCACGCAATGTGCTTATAGAGGAGATATTGCCGTCGAAAAATTTCATCGGCGTTGGTCGCTCCACTGGAAACGAATGCTATCTTAATTGCAACCACTTCATTCAACTGCCCGGCGAGTACGAAGTAGCGAGCAGTCTGTGTCTATACGAGAGGGAAAACGAACAAGAACGGCTCAAAATCCCTGGCCCTATCATGGAGGATGTGAATGTGTTTATCGTAATCAAGAAGAAGAACAATCAGGCAGGAATTCGCTACGAGTATACACTTCCTTCACACAACGGCAAAAACCAATCGGCGTACTACTGGAAGCTAACGGACTGGTCAGTTTGCTCGGCCACCTGCGGCGGAGGAAAACAGTTCCGTGAGTCAATATGTTATCATCGTGGCAAGGGAGTGGCTAAGGAGGAGCAGTGCCTGCGACATGCATTTGGGAAGCGGCATGAACCGATTGCGCGAGACTGCAACGACGATCCGTGTCCGTTTAACTGGTGGGTTGGACCTTGGCAGCTATGCCCAATGACTTGCCGCAAGCCACACAAGCCTGTGCCGATACGGGCGCAGATCGATTCTATGCGTTGGATTCCAAACGTCCAAACGCTCGAACCGGGATACGCATTGGCAATAACCAAGGCCCCGGAACCAACAAGCGAACAAGGGAACCCCTGGGGGGAGGAACTGGGCCCGTATTGTCCACGGAAATCAG]

[+] EMBL BX467826             [GGCCAGAATCGGCACGATGGGTGAAGAAGGGCGAAATCAACAAGAAGATCAACACAACCGACGGTGTACACGATGTACTAATGATTCCTGCTGGAGCACGCAATGTGCTTATAGAGGAGATATTGCCGTCGAAAAATTTCATCGGCGTTGGTCGCTCCACTGGAAACGAATGCTATCTTAATTGCAACCACTTCATTCAACTGCCCGGCGAGTACGAAGTAGCGAGCAGTCTGTGTCTATACGAGAGGGAAAACGAACAAGAACGGCTCAAAATCCCTGGCCCTATCATGGAGGATGTGAATGTGTTTATCGTAATCAAGAAGAAGAACAATCAGGCAGGAATTCGCTACGAGTATACACTTCCTTCACACAACGGCAAAAACCAATCGGCGTACTACTGGAAGCTAACGGACTGGTCAGTTTGCTCGGCCACCTGCGGCGGAGGAAAACAGTTCCGTGAGTCAATATGTTATCATCGTGGCAAGGGAGTGGCTAAGGAGGAGCAGTGCCTGCGACATGCATTTGGGAAGCGGCATGAACCGATTGCGCGAGACTGCAACGACGATCCGTGTCCGTTTAACTGGTGGGTTGGACCTTGGCAGCTATGCCCAATGACTTGCCGCAAGCCACACAAGCCTGTGCCGATACGGGCGCAGATCGATTCTATGCGTTGGATTCCAAACGTCCAAACGCTCGAACCGGGATACGCATTGGCAATAACCAAGGCCCCGGAACCAACAAGCGAACAAGGGAACCCCTGGGGGGAGGAACTGGGCCCGTATTGTCCACGGAAATCAG]
[+] EMBL BX613273             [                      GAAGAAGGGCGAAATCAACAAGAAGATCAACACAACCGACGGTGTACACGATGTACTAATGATTCCTGCTGGAGCACGCAATGTGCTTATAGAGGAGAAATTGCCGTCGAAAAATTTCATCGGCGTTGGTCGCTCCACTGGAAACTAATGCTATCTTAATTGCAACCACTTCATTCAACTGCCCGGCTAGTACGAAGTAGCGAGCAGTCTGTGTCTATACGAGAGGGAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]


>consensus_8189#1 GGCCAGAATCGGCACGATGGGTGAAGAAGGGCGAAATCAACAAGAAGATCAACACAACCG ACGGTGTACACGATGTACTAATGATTCCTGCTGGAGCACGCAATGTGCTTATAGAGGAGA TATTGCCGTCGAAAAATTTCATCGGCGTTGGTCGCTCCACTGGAAACGAATGCTATCTTA ATTGCAACCACTTCATTCAACTGCCCGGCGAGTACGAAGTAGCGAGCAGTCTGTGTCTAT ACGAGAGGGAAAACGAACAAGAACGGCTCAAAATCCCTGGCCCTATCATGGAGGATGTGA ATGTGTTTATCGTAATCAAGAAGAAGAACAATCAGGCAGGAATTCGCTACGAGTATACAC TTCCTTCACACAACGGCAAAAACCAATCGGCGTACTACTGGAAGCTAACGGACTGGTCAG TTTGCTCGGCCACCTGCGGCGGAGGAAAACAGTTCCGTGAGTCAATATGTTATCATCGTG GCAAGGGAGTGGCTAAGGAGGAGCAGTGCCTGCGACATGCATTTGGGAAGCGGCATGAAC CGATTGCGCGAGACTGCAACGACGATCCGTGTCCGTTTAACTGGTGGGTTGGACCTTGGC AGCTATGCCCAATGACTTGCCGCAAGCCACACAAGCCTGTGCCGATACGGGCGCAGATCG ATTCTATGCGTTGGATTCCAAACGTCCAAACGCTCGAACCGGGATACGCATTGGCAATAA CCAAGGCCCCGGAACCAACAAGCGAACAAGGGAACCCCTGGGGGGAGGAACTGGGCCCGT ATTGTCCACGGAAATCAG



consensusID : consensus_8189#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 541
fasta sequence
                              [AGGCAGAATCCCCCCGAGGTTNGAATCGCTACGAGTATACACTTCCTTCACACAACGTGCAAAAACCAATCGGCGTACTACTGGAAGCTAACGGACTGGTCAGTTTGCTCGGCCACCTGCGGCGGAGGAAAACAGTTCCGTGAGTCAATATGTTATCATACGTGGCAAGGGAGTGGCTAAGGAGGAGCAGTGCCTGCGCCATGCATTTGGGAAGCGGCATGAACCGATTGCGCGAGACTGCAACGACGATCCGTGTCCGTTTAACTGGTGGGTTGGACTTATGGCACGCTATGCCCAATGACTTGCCGCAAGCCACACAAGCCTGTGCCGATACGGCGCAGATCGACTTCTATGCGTTGATTCCAACTCCAACGCTCGACCGGATACGCATTGCAATAACAAACCCCGACCACACGACAAGGAACCCTGACGGCGAGGCAACTGCCCGTATGTCAAGAAAATCAGCGCATACTNGGCCAGGCANAACAGAACGTCCCGATAACCGATACCATATCGAAGCAATTNCGGTACCCTCCGATCT]

[+] EMBL AL692337             [AGGCAGAATCCCCCCGAGGTTNGAATCGCTACGAGTATACACTTCCTTCACACAACGTGCAAAAACCAATCGGCGTACTACTGGAAGCTAACGGACTGGTCAGTTTGCTCGGCCACCTGCGGCGGAGGAAAACAGTTCCGTGAGTCAATATGTTATCATACGTGGCAAGGGAGTGGCTAAGGAGGAGCAGTGCCTGCGCCATGCATTTGGGAAGCGGCATGAACCGATTGCGCGAGACTGCAACGACGATCCGTGTCCGTTTAACTGGTGGGTTGGACTTATGGCACGCTATGCCCAATGACTTGCCGCAAGCCACACAAGCCTGTGCCGATACGGCGCAGATCGACTTCTATGCGTTGATTCCAACTCCAACGCTCGACCGGATACGCATTGCAATAACAAACCCCGACCACACGACAAGGAACCCTGACGGCGAGGCAACTGCCCGTATGTCAAGAAAATCAGCGCATACTNGGCCAGGCANAACAGAACGTCCCGATAACCGATACCATATCGAAGCAATTNCGGTACCCTCCGATCT]


>consensus_8189#2 AGGCAGAATCCCCCCGAGGTTNGAATCGCTACGAGTATACACTTCCTTCACACAACGTGC AAAAACCAATCGGCGTACTACTGGAAGCTAACGGACTGGTCAGTTTGCTCGGCCACCTGC GGCGGAGGAAAACAGTTCCGTGAGTCAATATGTTATCATACGTGGCAAGGGAGTGGCTAA GGAGGAGCAGTGCCTGCGCCATGCATTTGGGAAGCGGCATGAACCGATTGCGCGAGACTG CAACGACGATCCGTGTCCGTTTAACTGGTGGGTTGGACTTATGGCACGCTATGCCCAATG ACTTGCCGCAAGCCACACAAGCCTGTGCCGATACGGCGCAGATCGACTTCTATGCGTTGA TTCCAACTCCAACGCTCGACCGGATACGCATTGCAATAACAAACCCCGACCACACGACAA GGAACCCTGACGGCGAGGCAACTGCCCGTATGTCAAGAAAATCAGCGCATACTNGGCCAG GCANAACAGAACGTCCCGATAACCGATACCATATCGAAGCAATTNCGGTACCCTCCGATC T



consensusID : consensus_8189#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 506
fasta sequence
                              [AGATCCCCCGAGTTAAAATACACTGGCTTCCTACTTCGATAAAATGAGCCGTGCGAACTGTACTGCAGTAACACGGAGGACACAATGATCGTACCGTTCGGAGACACGGCGGCCGATGGCACCTTCTGCAACCTGGGTACGAACGACATGTGCATCGGCGGCATCTGTCGCAAGGTAGGTTGTGATTGGGTTGTCGACTCAAACACTACTGAGGATAGGTGTGGCGTTTGTGGCGGTACCGGTGACACTTGCTTCGTGAAGAAGGGCGAAATCAACAAGAAGATCAACACAACCGACGGTGTACACGATGTACTAATGATTCCTGCTGGAGCACGCAATGTGCTTATAGAGGAGATATTGCCGTCGAAAAATTTCATCGGCGTTGGTCGCTCCACTGGAAACGAATGCTATCTTAATTGCAACCACTTCATTCAACTGCCCGGCGAGTACGAAGTAGCGAGCAGTCTGTGTCTATACGAGAGGGAAAACGAACAAGAACGGCTCAA]

[+] EMBL AL695603             [AGATCCCCCGAGTTAAAATACACTGGCTTCCTACTTCGATAAAATGAGCCGTGCGAACTGTACTGCAGTAACACGGAGGACACAATGATCGTACCGTTCGGAGACACGGCGGCCGATGGCACCTTCTGCAACCTGGGTACGAACGACATGTGCATCGGCGGCATCTGTCGCAAGGTAGGTTGTGATTGGGTTGTCGACTCAAACACTACTGAGGATAGGTGTGGCGTTTGTGGCGGTACCGGTGACACTTGCTTCGTGAAGAAGGGCGAAATCAACAAGAAGATCAACACAACCGACGGTGTACACGATGTACTAATGATTCCTGCTGGAGCACGCAATGTGCTTATAGAGGAGATATTGCCGTCGAAAAATTTCATCGGCGTTGGTCGCTCCACTGGAAACGAATGCTATCTTAATTGCAACCACTTCATTCAACTGCCCGGCGAGTACGAAGTAGCGAGCAGTCTGTGTCTATACGAGAGGGAAAACGAACAAGAACGGCTCAA]


>consensus_8189#3 AGATCCCCCGAGTTAAAATACACTGGCTTCCTACTTCGATAAAATGAGCCGTGCGAACTG TACTGCAGTAACACGGAGGACACAATGATCGTACCGTTCGGAGACACGGCGGCCGATGGC ACCTTCTGCAACCTGGGTACGAACGACATGTGCATCGGCGGCATCTGTCGCAAGGTAGGT TGTGATTGGGTTGTCGACTCAAACACTACTGAGGATAGGTGTGGCGTTTGTGGCGGTACC GGTGACACTTGCTTCGTGAAGAAGGGCGAAATCAACAAGAAGATCAACACAACCGACGGT GTACACGATGTACTAATGATTCCTGCTGGAGCACGCAATGTGCTTATAGAGGAGATATTG CCGTCGAAAAATTTCATCGGCGTTGGTCGCTCCACTGGAAACGAATGCTATCTTAATTGC AACCACTTCATTCAACTGCCCGGCGAGTACGAAGTAGCGAGCAGTCTGTGTCTATACGAG AGGGAAAACGAACAAGAACGGCTCAA



consensusID : consensus_8189#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 454
fasta sequence
                              [CAGAATCCCCNCGAGGTTAACTGGTCAGTTTGCTCGGCACCTGCGGCGGAGGAAAACAGTTCCGTGAGTCAATATGTTATCATCGTGGCAAGGGAGTGGCTAAGGAGGAGCAGTGCCTGCGACATGCATTTGGGAAGCGGCATGAACCGATTGCGCGAGACTGCAACGACGATCCGTGTCCGTTTAACTGGTGGGTTGGACCTTGGCAGCTATGCCCAATGACTTGCCGCAAGCCACACAAGCCTGTGCCGATACGGCGCAGATCGATTCTATGCGTTGATTCCAACTCCAACGCTCGACCGGATTACGCATTGCAATAACAAGCCCCGACCACACGACAAGGAACCCTGCGGCGAGGAACTGCCCGTATGTCAAGAAAATCAGCGATCAGGCCAGGAAACAGAACGTCCCGATACGATACCATTCGAAGAATTCGGTCCCTCCGATCTTCCAT]

[+] EMBL AL932580             [CAGAATCCCCNCGAGGTTAACTGGTCAGTTTGCTCGGCACCTGCGGCGGAGGAAAACAGTTCCGTGAGTCAATATGTTATCATCGTGGCAAGGGAGTGGCTAAGGAGGAGCAGTGCCTGCGACATGCATTTGGGAAGCGGCATGAACCGATTGCGCGAGACTGCAACGACGATCCGTGTCCGTTTAACTGGTGGGTTGGACCTTGGCAGCTATGCCCAATGACTTGCCGCAAGCCACACAAGCCTGTGCCGATACGGCGCAGATCGATTCTATGCGTTGATTCCAACTCCAACGCTCGACCGGATTACGCATTGCAATAACAAGCCCCGACCACACGACAAGGAACCCTGCGGCGAGGAACTGCCCGTATGTCAAGAAAATCAGCGATCAGGCCAGGAAACAGAACGTCCCGATACGATACCATTCGAAGAATTCGGTCCCTCCGATCTTCCAT]


>consensus_8189#4 CAGAATCCCCNCGAGGTTAACTGGTCAGTTTGCTCGGCACCTGCGGCGGAGGAAAACAGT TCCGTGAGTCAATATGTTATCATCGTGGCAAGGGAGTGGCTAAGGAGGAGCAGTGCCTGC GACATGCATTTGGGAAGCGGCATGAACCGATTGCGCGAGACTGCAACGACGATCCGTGTC CGTTTAACTGGTGGGTTGGACCTTGGCAGCTATGCCCAATGACTTGCCGCAAGCCACACA AGCCTGTGCCGATACGGCGCAGATCGATTCTATGCGTTGATTCCAACTCCAACGCTCGAC CGGATTACGCATTGCAATAACAAGCCCCGACCACACGACAAGGAACCCTGCGGCGAGGAA CTGCCCGTATGTCAAGAAAATCAGCGATCAGGCCAGGAAACAGAACGTCCCGATACGATA CCATTCGAAGAATTCGGTCCCTCCGATCTTCCAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8189#2      ------------------------------------------------------------
consensus_8189#4      ------------------------------------------------------------
consensus_8189#1      ------------------------------------------------------------
consensus_8189#0      CCGCAAGGGGGAAAAATACACGTGGCTTCCTTACTTCGATAAAAATGAGCCGTGCGAGCT 60
consensus_8189#3      ------------------------------------------------------------
                                                                                  

consensus_8189#2      ------------------------------------------------------------
consensus_8189#4      ------------------------------------------------------------
consensus_8189#1      ------------------------------------------------------------
consensus_8189#0      GTACTGCAGTAACACGGAGGACACAGTGATCGTACCGTTTGGAGACACGGCGGCCGATGG 120
consensus_8189#3      ------------------------------------------------------------
                                                                                  

consensus_8189#2      ------------------------------------------------------------
consensus_8189#4      ------------------------------------------------------------
consensus_8189#1      ------------------------------------------------------------
consensus_8189#0      CACCTTCTGCAACCTGGGTACGAACGACATGTGCATCGGCGGTATCTGTCGCAAGGTAGG 180
consensus_8189#3      ------------------------------------------------------------
                                                                                  

consensus_8189#2      ------------------------------------------------------------
consensus_8189#4      ------------------------------------------------------------
consensus_8189#1      --------------------------------------------------------GGCC 4
consensus_8189#0      TTGTGATTGGGTTGTCGACTCAAACACTACTGAGGATAGGTGTGGCGTTTGCGGCGGTAC 240
consensus_8189#3      ------------------------------------------------------------
                                                                                  

consensus_8189#2      ------------------------------------------------------------
consensus_8189#4      ------------------------------------------------------------
consensus_8189#1      AGAATCGGCACGATGGGTGAAGAAGGGCGAAATCAACAAGAAGATCAACACAACCGACGG 64
consensus_8189#0      CGGTGACACTTGCTTCGTGAAGAAGGGCGAAATCAACAAGAAGATCAACACAACAGACGG 300
consensus_8189#3      ------------------------------------------------------------
                                                                                  

consensus_8189#2      ------------------------------------------------------------
consensus_8189#4      ------------------------------------------------------------
consensus_8189#1      TGTACACGATGTACTAATGATTCCTGCTGGAGCACGCAATGTGCTTATAGAGGAGATATT 124
consensus_8189#0      TGTACACGATGTACTAATGATTCCCGCTGGAGCACGCAATGTGCTTATAGAGGAGATATT 360
consensus_8189#3      ------------------------------------------------------------
                                                                                  

consensus_8189#2      ------------------------------------------------------------
consensus_8189#4      ------------------------------------------------------------
consensus_8189#1      GCCGTCGAAAAATTTCATCGGCGTTGGTCGCTCCACTGGAAACGAATGCTATCTTAATTG 184
consensus_8189#0      GCCGTCGAAAAATTTCATCGGCGTCGGTCGCTCCACTGGAAACGAGTGCTATCTTAATTG 420
consensus_8189#3      ------------------------------------------------------------
                                                                                  

consensus_8189#2      ------------------------------------------------------------
consensus_8189#4      ------------------------------------------------------------
consensus_8189#1      CAACCACTTCATTCAACTGCCCGGCGAGTACGAAGTAGCGAGCAGTCTGTGTCTATACGA 244
consensus_8189#0      CAACCACTTCATTCAACTGCCTGGCGAGTACGAAGTAGCGAGCAGTCTGTGTCTATACGA 480
consensus_8189#3      ------------------------------------------------------------
                                                                                  

consensus_8189#2      ------------------------------------------------------------
consensus_8189#4      ------------------------------------------------------------
consensus_8189#1      GAGGGAAAACGAACAAGAACGGCTCAAAATCCCTGGCCCTATCATGGAGGATGTGAATGT 304
consensus_8189#0      GAGGGAAAACGAACAAGAACGACTCAAAATCCCTGGCCCTATCATGGAGGATGTGAATGT 540
consensus_8189#3      ------------------------------------------------------------
                                                                                  

consensus_8189#2      --------------AGGCAGAATCCCCCCGAGGTTNGAATCGCTACGAGTATACACTTCC 46
consensus_8189#4      ------------------------------------------------------------
consensus_8189#1      GTTTATCGTAATCAAGAAGAAGAACAATCAGGCAGGAATTCGCTACGAGTATACACTTCC 364
consensus_8189#0      GTTTATCGTAATCAAGAAGAAGAACAATCAGGCAGGAATTCGCTACGAGTATACACTTCC 600
consensus_8189#3      ------------------------------------------------------------
                                                                                  

consensus_8189#2      TTCACACAACGTGCAAAAACCAATCGGCGTACTACTGGAAGCTAACGGACTGGTCAGTTT 106
consensus_8189#4      ------------------------CAGAATCCC-CNCGAGGTTAAC----TGGTCAGTTT 31
consensus_8189#1      TTCACACAACG-GCAAAAACCAATCGGCGTACTACTGGAAGCTAACGGACTGGTCAGTTT 423
consensus_8189#0      TTCACACAACG-GCAAAAACCAATCGGCGTACTACTGGAAGCTAACGGACTGGTCAGTTT 659
consensus_8189#3      -AGATCCCCCGAGTTAAAATACACTGGCTTCCTACTTCGATAAAATGAGCCGTGCGAACT 59
                                                *  * *  *        **      *  *    *

consensus_8189#2      GCTCGGCCACC-TGCGGCGGAGGAAA--ACAGTTCCGTGAGTCAATATGTTATCATACGT 163
consensus_8189#4      GCTCGGC-ACC-TGCGGCGGAGGAAA--ACAGTTCCGTGAGTCAATATGTTATCAT-CGT 86
consensus_8189#1      GCTCGGCCACC-TGCGGCGGAGGAAA--ACAGTTCCGTGAGTCAATATGTTATCAT-CGT 479
consensus_8189#0      GCTCGGCCACC-TGCGGCGGAGGAAA--ACAGTTCCGTGAGTCAATATGTTATCAT-CGT 715
consensus_8189#3      GTACTGCAGTAACACGGAGGACACAATGATCGTACCGTTCGGAGACACGGCGGCCGATGG 119
                      *  * **       *** ***   **  *  ** ****  *   * * *    *    * 

consensus_8189#2      GGCAAGGGAGTGGCTAAGGAGGAGCAGTGCCTGCGCCAT--GCATTTGGGAAGCGGCATG 221
consensus_8189#4      GGCAAGGGAGTGGCTAAGGAGGAGCAGTGCCTGCGACAT--GCATTTGGGAAGCGGCATG 144
consensus_8189#1      GGCAAGGGAGTGGCTAAGGAGGAGCAGTGCCTGCGACAT--GCATTTGGGAAGCGGCATG 537
consensus_8189#0      GGCAAGGGAGTGGCTAAGGAGGAGCAGTGCCTGCGCCAT--GCATTTGGGAAGCGGCATG 773
consensus_8189#3      CACCTTCTGCAACCTGGGTACGAACGACATGTGCATCGGCGGCATCTGTCGCAAGGTAGG 179
                        *          **  * * ** *      ***  *    **** **      ** * *

consensus_8189#2      AACCGATTGCGCGA--GACTGCAACGACGATCCGTGTCCGTTTAACTGGTGGGTTGG-AC 278
consensus_8189#4      AACCGATTGCGCGA--GACTGCAACGACGATCCGTGTCCGTTTAACTGGTGGGTTGG-AC 201
consensus_8189#1      AACCGATTGCGCGA--GACTGCAACGACGATCCGTGTCCGTTTAACTGGTGGGTTGG-AC 594
consensus_8189#0      AACCGATTGCGCGA--GACTGCAACGACGATCCGTGTCCGTTTAACTGGTGGGTTGG-AC 830
consensus_8189#3      TTGTGATTGGGTTGTCGACTCAAACACTACTGAGGATAGGTGTGGCGTTTGTGGCGGTAC 239
                          ***** *     ****  ***     *  *  *  ** *  *   ** *  ** **

consensus_8189#2      TTATGGCACGCTATGCCCAATGACTTGCCGCAAGCCACACAAGCCTGTGCCGATACGG-C 337
consensus_8189#4      CT-TGGCA-GCTATGCCCAATGACTTGCCGCAAGCCACACAAGCCTGTGCCGATACGG-C 258
consensus_8189#1      CT-TGGCA-GCTATGCCCAATGACTTGCCGCAAGCCACACAAGCCTGTGCCGATACGGGC 652
consensus_8189#0      CT-TGGCA-GCTATGCCCAATGACTTGCCGCAAGCCACACAAGCCTGTGCCGATACGG-C 887
consensus_8189#3      CGGTGACA---CTTGCTTCGTGAAGAAGGGCGAAATCAACAAGAAGAT--CAACACAACC 294
                         ** **     ***    ***      ** *     *****    *  * * **   *

consensus_8189#2      GCAGATCGACTTCTATGCGTTG---ATTCCAA---CTCCAACGCTCGA-------CCGGA 384
consensus_8189#4      GCAGATCGA-TTCTATGCGTTG---ATTCCAA---CTCCAACGCTCGA-------CCGGA 304
consensus_8189#1      GCAGATCGA-TTCTATGCGTTGG--ATTCCAAACGTCCAAACGCTCGAA------CCGGG 703
consensus_8189#0      GCAGATCGA-TTCTATGCGTTG---ATTCCAA---CTCCAACGCTCGA-------CCGGA 933
consensus_8189#3      GACGGTGTA-CACGATGTACTAATGATTCCTG---CTGGAGCACGCAATGTGCTTATAGA 350
                      *  * *  *   * ***   *    *****         * * * * *          * 

consensus_8189#2      T-ACGCATTG-CAATAAC--AAACCCCGA---CCACACG---ACAAGGAACCCTGACGGC 434
consensus_8189#4      TTACGCATTG-CAATAAC--AAGCCCCGA---CCACACG---ACAAGGAACCCTG-CGGC 354
consensus_8189#1      ATACGCATTGGCAATAACCAAGGCCCCGGAACCAACAAGCGAACAAGGGAACCCCTGGGG 763
consensus_8189#0      T-ACGCATTG-CAATAAC--AAGCCCCGA---CCACACG---ACAAGGAACCCTG-CGGC 982
consensus_8189#3      GGAGATATTGCCGTCGAAAAATTTCATCGGCGTTGGTCGCT-CCACTGGAAACGAATGCT 409
                        *   **** *    *   *   *             *    **  * *  *    *  

consensus_8189#2      GAGGCAACTG--CCCGTATG--TCAAGAAAATCAGCGCATACTNGGCCAGGCANAACAGA 490
consensus_8189#4      GAGG-AACTG--CCCGTATG--TCAAGAAAATCAGCG---ATCAGGCCAGG--AAACAGA 404
consensus_8189#1      GGAGGAACTGGGCCCGTATTGTCCACGGAAATCAG------------------------- 798
consensus_8189#0      GAGG-AACTG--CCCGTATG--TCAAGAAAATCAGCG---ATCAGGCCAGG-AAAACAGA 1033
consensus_8189#3      ATCTTAATTGCAACCACTTCATTCAACTGC-CCGGCGAGTACGAAGTAGCG---AGCAGT 465
                           ** **   **   *    **       * *                         

consensus_8189#2      ACGTCCCGATAACCGATACCATATCGAAGCAATTNCGGTACCCTCCGATCT--------- 541
consensus_8189#4      ACGTCCCGATA--CGATACCAT-TCGAAGAA--TTCGGT-CCCTCCGATCTTCCAT---- 454
consensus_8189#1      ------------------------------------------------------------
consensus_8189#0      ACGTCCCGATA--CGATACCAT-TCGAAGAA--TTCNGGTCCCTCCGATCTTNCATCCCC 1088
consensus_8189#3      CTGTGTCTATA--CGAGAGGGAAAACGAACAAGAACGGCTCAA----------------- 506
                                                                                  

consensus_8189#2      ------------------------------------------------------------
consensus_8189#4      ------------------------------------------------------------
consensus_8189#1      ------------------------------------------------------------
consensus_8189#0      GTCGACACCGGCTGACGACTATGAGGNGAACAACAACATCTGAACACACAATCGCGCGCC 1148
consensus_8189#3      ------------------------------------------------------------
                                                                                  

consensus_8189#2      -----------------------------------------
consensus_8189#4      -----------------------------------------
consensus_8189#1      -----------------------------------------
consensus_8189#0      AGTGCGACCTTGGAGAGTGAATATGTTATATTAACATTTAT 1189
consensus_8189#3      -----------------------------------------
                                                               




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)