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Anopheles gambiae
cluster # 8200 cluster # 8200       Sequences # 9       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8200#0 length = 781 sequences # 7  
consensus_8200#1 length = 496 sequences # 2  

consensusID : consensus_8200#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 781
fasta sequence
                              [CTGGATTCACATTAGAAAGAAAAGCAAAGAAACAACACACGGTCCG-TTTTCG-GCAATAAATACGGGTTCCGGGTGGAAAAAACTGGTCACAAAGG-TTCCGCTTCCCCACAAAACGGTATCCACTCGGTGTGCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGGGCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGGGAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTGCGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCGGCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCGCTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCGAAAAACTACCAGGTGTGGCATCATCGGCGCGTCATCGTCGAATGGTTGGACGACCCATCGAGCGAGCTGACACTGACGGAGAGCATTCTCGACATGGATGCGAAGAACTATCACGCCTGGCAGCACCGGCAGTGGGTCATAAAGAACTACAACCTATTTGACGATGAGCTGCATTACGTGGACCGGTTAATATCGGAGGATATGCGCAACAATTCCGCTTGGAACGAGCGG-TTCTTCGTGCTGAAGCACGGCGG-CTTCACGCCGGAGGTGCTCGAGCGCGAGGTTAAGTACGTCATCACGC]

[+] EMBL CNS08MAG             [CTGGATTCACATTAGAAAGAAAAGCAAAGAAACAACACACGGTCCG TTTTCG GCAATAAATACGGGTTCCGGGTGGAAAAAACTGGTCACAAAGG TTCCGCTTCCCCACAAAACGGTATCCACTCGGTGTGCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGGGCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGGGAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTGCGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCGGCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCGCTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCGAAAAACTACCAGGTGTGGCATCATCGGCGCGTCATCGTCGAATGGTTGGACGACCCATCGAGCGAGCTGACACTGACGGAGAGCATTCTCGACATGGATGCGAAAAACTATCACGCCTGGCAGCACCGGCAGTGGGTCATAAAGAACTACAACCTATTTGACGATGAGCTGCATTACGTGGACCGGTTAATATCGGAGGATATGCGCAACAATTCCGCTTGGAACGAGCGG TTCTTCGTGCTGAAGCACGGCGG CTTCACGCTGGA                                   ]
[+] EMBL CNS09ACS             [                     AAGCAAAGAAACAACACACGGTCCG TTTTCG GCAATAAATACGGGTTCCGGGTGGAAAAAACCGGTCACAAAGGCTTCCGCTTCCCCACAAAACGGTATCCACTCGGTGTGCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGGGCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGGGAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTGCGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCGGCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCGCTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCGAAAAACTACCAGGTGTGGCATCATCGGCGCGTCATCGTCGAATGGTTGGACGACCCATCGAGCGAGCTGACACTGACGGAGAGCATTCTCGACATGGATGCGAAGAACTATCACGCCTGGCAGCACCGGCAGTGGGTCATAAAGAACTACAACCTATTTGACGATGAGCTGCATTACGTGGACCGGTTAATATCGGAGGATATGCGCAACAATTCCGCTTGGAACGAGCGGTTTCTTCGTGCTGAAGCACGGCGGTCTTCACGCCGGA                                   ]
[+] EMBL BM603288             [                     ccGCAAAGAAACAACACACGGTCCG TTTTCG GCAATAAATACGGGTTCCGGGTGGAAAAAACTGGTCACAAAGG TTCCGCTTCCCCACAAAACGGTATCCACTCGGTGTGCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGGGCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGGGAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTGCGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCGGCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGTGACATTCTGAAAGCGCTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCGAAAAACTACCAGGTGTGGCATCATCGGCGCGTCATCGTCGAATGGTTGGACGACCCATCGAGCGAGCTGACACTGACGGAGAGCATTCTCGACATGGATGCGAAGAACTATCACGCCTGGCAGCACCGGCAGTGGGTCATAAAGAACTACAACCTATTTGACGATGAGCTGCATTACGTGGACCGGTTAATATCGGAGGATATGCGCAACAATTCCGCTTGGAACGAGCGG TTCTTCGTGCTGAAGCACGG                                                   ]
[+] EMBL CNS09PET             [                          AAGAAACGACACACGGTCCGTTTTTCG GCAATAAATACGGGTTCCGGGTGGAAAAAACTGGTCACAAAGG TTCCGCTTCCCCACAAAACGGTATCCACTCGGTGTGCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGGGCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGGGAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTGCGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCGGCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCGCTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCGAAAAACTACCAGGTGTGGCATCATCGGCGCGTCATCGTCGAATGGTTGGACGACCCATCGAGCGAGCTGACACTGACGGAGAGCATTCTCGACATGGATGCGAAGAACTATCACGCCTGGCAGCACCGGCAGTGGGTCATAAAGAACTACAACCTATTTGACGATGAGCTGCATTACGTGGACCGGTTAATATCGGAGGATATGCGCAACACTTCCGCTT                                                                                   ]
[+] EMBL CNS09EQF             [                            GAAACGACACACGGTCCG TTTTCGCGCAATAAATACGGGTTCCGGGTGGAAAACACTGGTCACAAAGG TTCCGCTTCCCCACAAAACGGTATCCACTCGGTGTGCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGGGCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGGGAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTGCGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCGGCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCGCTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCGAAAAACTACCAGGTGTGGCATCATCGGCGCGTCATCGTCGAATGGTTGGACGACCCATCGAGCGAGCTGACACTGACGGAGAGCATTCTCGACATGGATGCGAAGAACTATCACGCCTGGCAGCACCGGCAGTGGGTCATAAAGAACTACAACCTATTTGACGATGAGCTGCATTACGTGGACCGGTTAATATCGGAGGATATGCGCAACAATTCCGCTTGGAACGAGCGG TTCTTCGTGCTGAAGCACGGCGG CTTCACGCCGGAGGTGCTCGAGCGCGAGGTTAAGTACGTCATCACGC]
[+] EMBL BX604610             [                                  ACACACGGTCCG TTTTCG GCAATAAATACGGGTTCCGGGTGGAAAAAACTGGTCACAAAGG TTCCGCTTCCCCACAAAACGGTATCCACTCGGTGTGCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGGGCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGGGAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTGCGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCGGCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCGCTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCGAAAAACTACCAGGTGTGGCATCATCGGCGCGTCATCGTCGAATGGTTGGACGACCCATCGAGCGAGCTGACACTGACGGAGAGCATTCTCGACATGGATGCGAAGAACTATCACGCCTGGCAGCACCGGCAGTGGGTCATAAAGAACTACAACCTATTTGACGATGAGCTGCATTACGTGGACCGGTTAATATCGGAGGATATGCGCAACAATTCCG                                                                                      ]
[+] EMBL BX606543             [                                                                                                                                 GTGTGCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGGGCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGGGAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTGCGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCGGCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCGCTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCGAAAAACTACCAGGTGTGGCATCATCGGCGCGTCATCGTCGAATGGTTGGACGACCCATCGAGCGAGCTGACACTGACGGAGAGCATTCTCGACATGGATGCGAAGAACTATCACGCCTGGCAGCACCGGCAGTGGGTCATAAAGAACTACAACCTATTTGACGATGAGCTGCATTACGTGGACCGGTTAATATCGGAGGATATGCGCAACAATTCCGCTTGGAACGAGCGG TTCTTCGTGCTGAAGCACG                                                    ]


>consensus_8200#0 CTGGATTCACATTAGAAAGAAAAGCAAAGAAACAACACACGGTCCGTTTTCGGCAATAAA TACGGGTTCCGGGTGGAAAAAACTGGTCACAAAGGTTCCGCTTCCCCACAAAACGGTATC CACTCGGTGTGCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGG GCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGG GAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTG CGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCG GCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCG CTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCG AAAAACTACCAGGTGTGGCATCATCGGCGCGTCATCGTCGAATGGTTGGACGACCCATCG AGCGAGCTGACACTGACGGAGAGCATTCTCGACATGGATGCGAAGAACTATCACGCCTGG CAGCACCGGCAGTGGGTCATAAAGAACTACAACCTATTTGACGATGAGCTGCATTACGTG GACCGGTTAATATCGGAGGATATGCGCAACAATTCCGCTTGGAACGAGCGGTTCTTCGTG CTGAAGCACGGCGGCTTCACGCCGGAGGTGCTCGAGCGCGAGGTTAAGTACGTCATCACG C



consensusID : consensus_8200#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 496
fasta sequence
                              [AATCGCCCGAGGNCACACACGGTCCGTTTTCGGCAATAAATACGGGTTCCGGGTGGAAAAAACTGGTCACAAAGGTTCCGCTACAATACAAAACGGTATCCACTCGGTGTGCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGGGCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGGGAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTGCGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCGGCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCGCTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCGAAAAACTACCAGGTGTGGCATCATCGGCGCGTCATC]

[+] EMBL AL932525             [AATCGCCCGAGGNCACACACGGTCCGTTTTCGGCAATAAATACGGGTTCCGGGTGGAAAAAACTGGTCACAAAGGTTCCGCTACAATACAAAACGGTATCCACTCGGTGTGCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGGGCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGGGAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTGCGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCGGCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCGCTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCGAAAAACTACCAGGTGTGGCATCATCGGCGCGTCATC]
[+] EMBL AGA284795            [                                                                                          AAACGGTATCCACTCGGTGCCCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGGGCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGGGAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTGCGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCGGCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCGCTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCGGAAAACTACCAGGTGTGGCATCATCGGCG       ]


>consensus_8200#1 AATCGCCCGAGGNCACACACGGTCCGTTTTCGGCAATAAATACGGGTTCCGGGTGGAAAA AACTGGTCACAAAGGTTCCGCTACAATACAAAACGGTATCCACTCGGTGTGCGCGATGGC AGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGGGCGCTGTACTCGCGCCGGCC GGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGGGAGAATCCGGTCGTGATGAT CCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTGCGTGCGATCATATCGAGGCA GGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCGGCCAAGCTGAATGCCGCCAA CTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCGCTCAACGCCGACCTGTACGA GGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCGAAAAACTACCAGGTGTGGCA TCATCGGCGCGTCATC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8200#0      CTGGATTCACATTAGAAAGAAAAGCAAAGAAACAACACACGGTCCGTTTTCGGCAATAAA 60
consensus_8200#1      -------------------AATCGCCC-GAGGNCACACACGGTCCGTTTTCGGCAATAAA 40
                                         **  **   **    **************************

consensus_8200#0      TACGGGTTCCGGGTGGAAAAAACTGGTCACAAAGGTTCCGCTTCCCCACAAAACGGTATC 120
consensus_8200#1      TACGGGTTCCGGGTGGAAAAAACTGGTCACAAAGGTTCCGCTACAATACAAAACGGTATC 100
                      ****************************************** *   *************

consensus_8200#0      CACTCGGTGTGCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGG 180
consensus_8200#1      CACTCGGTGTGCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGG 160
                      ************************************************************

consensus_8200#0      GCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGG 240
consensus_8200#1      GCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGG 220
                      ************************************************************

consensus_8200#0      GAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTG 300
consensus_8200#1      GAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTG 280
                      ************************************************************

consensus_8200#0      CGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCG 360
consensus_8200#1      CGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCG 340
                      ************************************************************

consensus_8200#0      GCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCG 420
consensus_8200#1      GCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCG 400
                      ************************************************************

consensus_8200#0      CTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCG 480
consensus_8200#1      CTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCG 460
                      ************************************************************

consensus_8200#0      AAAAACTACCAGGTGTGGCATCATCGGCGCGTCATCGTCGAATGGTTGGACGACCCATCG 540
consensus_8200#1      AAAAACTACCAGGTGTGGCATCATCGGCGCGTCATC------------------------ 496
                      ************************************                        

consensus_8200#0      AGCGAGCTGACACTGACGGAGAGCATTCTCGACATGGATGCGAAGAACTATCACGCCTGG 600
consensus_8200#1      ------------------------------------------------------------
                                                                                  

consensus_8200#0      CAGCACCGGCAGTGGGTCATAAAGAACTACAACCTATTTGACGATGAGCTGCATTACGTG 660
consensus_8200#1      ------------------------------------------------------------
                                                                                  

consensus_8200#0      GACCGGTTAATATCGGAGGATATGCGCAACAATTCCGCTTGGAACGAGCGGTTCTTCGTG 720
consensus_8200#1      ------------------------------------------------------------
                                                                                  

consensus_8200#0      CTGAAGCACGGCGGCTTCACGCCGGAGGTGCTCGAGCGCGAGGTTAAGTACGTCATCACG 780
consensus_8200#1      ------------------------------------------------------------
                                                                                  

consensus_8200#0      C 781
consensus_8200#1      -
                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)