These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8200#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 781 fasta sequence [CTGGATTCACATTAGAAAGAAAAGCAAAGAAACAACACACGGTCCG-TTTTCG-GCAATAAATACGGGTTCCGGGTGGAAAAAACTGGTCACAAAGG-TTCCGCTTCCCCACAAAACGGTATCCACTCGGTGTGCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGGGCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGGGAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTGCGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCGGCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCGCTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCGAAAAACTACCAGGTGTGGCATCATCGGCGCGTCATCGTCGAATGGTTGGACGACCCATCGAGCGAGCTGACACTGACGGAGAGCATTCTCGACATGGATGCGAAGAACTATCACGCCTGGCAGCACCGGCAGTGGGTCATAAAGAACTACAACCTATTTGACGATGAGCTGCATTACGTGGACCGGTTAATATCGGAGGATATGCGCAACAATTCCGCTTGGAACGAGCGG-TTCTTCGTGCTGAAGCACGGCGG-CTTCACGCCGGAGGTGCTCGAGCGCGAGGTTAAGTACGTCATCACGC] [+] EMBL CNS08MAG [CTGGATTCACATTAGAAAGAAAAGCAAAGAAACAACACACGGTCCG TTTTCG GCAATAAATACGGGTTCCGGGTGGAAAAAACTGGTCACAAAGG TTCCGCTTCCCCACAAAACGGTATCCACTCGGTGTGCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGGGCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGGGAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTGCGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCGGCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCGCTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCGAAAAACTACCAGGTGTGGCATCATCGGCGCGTCATCGTCGAATGGTTGGACGACCCATCGAGCGAGCTGACACTGACGGAGAGCATTCTCGACATGGATGCGAAAAACTATCACGCCTGGCAGCACCGGCAGTGGGTCATAAAGAACTACAACCTATTTGACGATGAGCTGCATTACGTGGACCGGTTAATATCGGAGGATATGCGCAACAATTCCGCTTGGAACGAGCGG TTCTTCGTGCTGAAGCACGGCGG CTTCACGCTGGA ] [+] EMBL CNS09ACS [ AAGCAAAGAAACAACACACGGTCCG TTTTCG GCAATAAATACGGGTTCCGGGTGGAAAAAACCGGTCACAAAGGCTTCCGCTTCCCCACAAAACGGTATCCACTCGGTGTGCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGGGCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGGGAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTGCGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCGGCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCGCTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCGAAAAACTACCAGGTGTGGCATCATCGGCGCGTCATCGTCGAATGGTTGGACGACCCATCGAGCGAGCTGACACTGACGGAGAGCATTCTCGACATGGATGCGAAGAACTATCACGCCTGGCAGCACCGGCAGTGGGTCATAAAGAACTACAACCTATTTGACGATGAGCTGCATTACGTGGACCGGTTAATATCGGAGGATATGCGCAACAATTCCGCTTGGAACGAGCGGTTTCTTCGTGCTGAAGCACGGCGGTCTTCACGCCGGA ] [+] EMBL BM603288 [ ccGCAAAGAAACAACACACGGTCCG TTTTCG GCAATAAATACGGGTTCCGGGTGGAAAAAACTGGTCACAAAGG TTCCGCTTCCCCACAAAACGGTATCCACTCGGTGTGCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGGGCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGGGAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTGCGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCGGCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGTGACATTCTGAAAGCGCTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCGAAAAACTACCAGGTGTGGCATCATCGGCGCGTCATCGTCGAATGGTTGGACGACCCATCGAGCGAGCTGACACTGACGGAGAGCATTCTCGACATGGATGCGAAGAACTATCACGCCTGGCAGCACCGGCAGTGGGTCATAAAGAACTACAACCTATTTGACGATGAGCTGCATTACGTGGACCGGTTAATATCGGAGGATATGCGCAACAATTCCGCTTGGAACGAGCGG TTCTTCGTGCTGAAGCACGG ] [+] EMBL CNS09PET [ AAGAAACGACACACGGTCCGTTTTTCG GCAATAAATACGGGTTCCGGGTGGAAAAAACTGGTCACAAAGG TTCCGCTTCCCCACAAAACGGTATCCACTCGGTGTGCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGGGCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGGGAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTGCGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCGGCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCGCTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCGAAAAACTACCAGGTGTGGCATCATCGGCGCGTCATCGTCGAATGGTTGGACGACCCATCGAGCGAGCTGACACTGACGGAGAGCATTCTCGACATGGATGCGAAGAACTATCACGCCTGGCAGCACCGGCAGTGGGTCATAAAGAACTACAACCTATTTGACGATGAGCTGCATTACGTGGACCGGTTAATATCGGAGGATATGCGCAACACTTCCGCTT ] [+] EMBL CNS09EQF [ GAAACGACACACGGTCCG TTTTCGCGCAATAAATACGGGTTCCGGGTGGAAAACACTGGTCACAAAGG TTCCGCTTCCCCACAAAACGGTATCCACTCGGTGTGCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGGGCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGGGAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTGCGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCGGCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCGCTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCGAAAAACTACCAGGTGTGGCATCATCGGCGCGTCATCGTCGAATGGTTGGACGACCCATCGAGCGAGCTGACACTGACGGAGAGCATTCTCGACATGGATGCGAAGAACTATCACGCCTGGCAGCACCGGCAGTGGGTCATAAAGAACTACAACCTATTTGACGATGAGCTGCATTACGTGGACCGGTTAATATCGGAGGATATGCGCAACAATTCCGCTTGGAACGAGCGG TTCTTCGTGCTGAAGCACGGCGG CTTCACGCCGGAGGTGCTCGAGCGCGAGGTTAAGTACGTCATCACGC] [+] EMBL BX604610 [ ACACACGGTCCG TTTTCG GCAATAAATACGGGTTCCGGGTGGAAAAAACTGGTCACAAAGG TTCCGCTTCCCCACAAAACGGTATCCACTCGGTGTGCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGGGCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGGGAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTGCGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCGGCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCGCTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCGAAAAACTACCAGGTGTGGCATCATCGGCGCGTCATCGTCGAATGGTTGGACGACCCATCGAGCGAGCTGACACTGACGGAGAGCATTCTCGACATGGATGCGAAGAACTATCACGCCTGGCAGCACCGGCAGTGGGTCATAAAGAACTACAACCTATTTGACGATGAGCTGCATTACGTGGACCGGTTAATATCGGAGGATATGCGCAACAATTCCG ] [+] EMBL BX606543 [ GTGTGCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGGGCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGGGAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTGCGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCGGCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCGCTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCGAAAAACTACCAGGTGTGGCATCATCGGCGCGTCATCGTCGAATGGTTGGACGACCCATCGAGCGAGCTGACACTGACGGAGAGCATTCTCGACATGGATGCGAAGAACTATCACGCCTGGCAGCACCGGCAGTGGGTCATAAAGAACTACAACCTATTTGACGATGAGCTGCATTACGTGGACCGGTTAATATCGGAGGATATGCGCAACAATTCCGCTTGGAACGAGCGG TTCTTCGTGCTGAAGCACG ] consensusID : consensus_8200#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 496 fasta sequence [AATCGCCCGAGGNCACACACGGTCCGTTTTCGGCAATAAATACGGGTTCCGGGTGGAAAAAACTGGTCACAAAGGTTCCGCTACAATACAAAACGGTATCCACTCGGTGTGCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGGGCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGGGAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTGCGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCGGCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCGCTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCGAAAAACTACCAGGTGTGGCATCATCGGCGCGTCATC] [+] EMBL AL932525 [AATCGCCCGAGGNCACACACGGTCCGTTTTCGGCAATAAATACGGGTTCCGGGTGGAAAAAACTGGTCACAAAGGTTCCGCTACAATACAAAACGGTATCCACTCGGTGTGCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGGGCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGGGAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTGCGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCGGCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCGCTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCGAAAAACTACCAGGTGTGGCATCATCGGCGCGTCATC] [+] EMBL AGA284795 [ AAACGGTATCCACTCGGTGCCCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGGGCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGGGAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTGCGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCGGCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCGCTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCGGAAAACTACCAGGTGTGGCATCATCGGCG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8200#0 CTGGATTCACATTAGAAAGAAAAGCAAAGAAACAACACACGGTCCGTTTTCGGCAATAAA 60 consensus_8200#1 -------------------AATCGCCC-GAGGNCACACACGGTCCGTTTTCGGCAATAAA 40 ** ** ** ************************** consensus_8200#0 TACGGGTTCCGGGTGGAAAAAACTGGTCACAAAGGTTCCGCTTCCCCACAAAACGGTATC 120 consensus_8200#1 TACGGGTTCCGGGTGGAAAAAACTGGTCACAAAGGTTCCGCTACAATACAAAACGGTATC 100 ****************************************** * ************* consensus_8200#0 CACTCGGTGTGCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGG 180 consensus_8200#1 CACTCGGTGTGCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGG 160 ************************************************************ consensus_8200#0 GCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGG 240 consensus_8200#1 GCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGG 220 ************************************************************ consensus_8200#0 GAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTG 300 consensus_8200#1 GAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTG 280 ************************************************************ consensus_8200#0 CGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCG 360 consensus_8200#1 CGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCG 340 ************************************************************ consensus_8200#0 GCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCG 420 consensus_8200#1 GCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCG 400 ************************************************************ consensus_8200#0 CTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCG 480 consensus_8200#1 CTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCG 460 ************************************************************ consensus_8200#0 AAAAACTACCAGGTGTGGCATCATCGGCGCGTCATCGTCGAATGGTTGGACGACCCATCG 540 consensus_8200#1 AAAAACTACCAGGTGTGGCATCATCGGCGCGTCATC------------------------ 496 ************************************ consensus_8200#0 AGCGAGCTGACACTGACGGAGAGCATTCTCGACATGGATGCGAAGAACTATCACGCCTGG 600 consensus_8200#1 ------------------------------------------------------------ consensus_8200#0 CAGCACCGGCAGTGGGTCATAAAGAACTACAACCTATTTGACGATGAGCTGCATTACGTG 660 consensus_8200#1 ------------------------------------------------------------ consensus_8200#0 GACCGGTTAATATCGGAGGATATGCGCAACAATTCCGCTTGGAACGAGCGGTTCTTCGTG 720 consensus_8200#1 ------------------------------------------------------------ consensus_8200#0 CTGAAGCACGGCGGCTTCACGCCGGAGGTGCTCGAGCGCGAGGTTAAGTACGTCATCACG 780 consensus_8200#1 ------------------------------------------------------------ consensus_8200#0 C 781 consensus_8200#1 - |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||