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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8200#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 781 fasta sequence
[CTGGATTCACATTAGAAAGAAAAGCAAAGAAACAACACACGGTCCG-TTTTCG-GCAATAAATACGGGTTCCGGGTGGAAAAAACTGGTCACAAAGG-TTCCGCTTCCCCACAAAACGGTATCCACTCGGTGTGCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGGGCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGGGAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTGCGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCGGCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCGCTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCGAAAAACTACCAGGTGTGGCATCATCGGCGCGTCATCGTCGAATGGTTGGACGACCCATCGAGCGAGCTGACACTGACGGAGAGCATTCTCGACATGGATGCGAAGAACTATCACGCCTGGCAGCACCGGCAGTGGGTCATAAAGAACTACAACCTATTTGACGATGAGCTGCATTACGTGGACCGGTTAATATCGGAGGATATGCGCAACAATTCCGCTTGGAACGAGCGG-TTCTTCGTGCTGAAGCACGGCGG-CTTCACGCCGGAGGTGCTCGAGCGCGAGGTTAAGTACGTCATCACGC]
[+] EMBL CNS08MAG [CTGGATTCACATTAGAAAGAAAAGCAAAGAAACAACACACGGTCCG TTTTCG GCAATAAATACGGGTTCCGGGTGGAAAAAACTGGTCACAAAGG TTCCGCTTCCCCACAAAACGGTATCCACTCGGTGTGCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGGGCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGGGAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTGCGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCGGCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCGCTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCGAAAAACTACCAGGTGTGGCATCATCGGCGCGTCATCGTCGAATGGTTGGACGACCCATCGAGCGAGCTGACACTGACGGAGAGCATTCTCGACATGGATGCGAAAAACTATCACGCCTGGCAGCACCGGCAGTGGGTCATAAAGAACTACAACCTATTTGACGATGAGCTGCATTACGTGGACCGGTTAATATCGGAGGATATGCGCAACAATTCCGCTTGGAACGAGCGG TTCTTCGTGCTGAAGCACGGCGG CTTCACGCTGGA ]
[+] EMBL CNS09ACS [ AAGCAAAGAAACAACACACGGTCCG TTTTCG GCAATAAATACGGGTTCCGGGTGGAAAAAACCGGTCACAAAGGCTTCCGCTTCCCCACAAAACGGTATCCACTCGGTGTGCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGGGCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGGGAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTGCGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCGGCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCGCTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCGAAAAACTACCAGGTGTGGCATCATCGGCGCGTCATCGTCGAATGGTTGGACGACCCATCGAGCGAGCTGACACTGACGGAGAGCATTCTCGACATGGATGCGAAGAACTATCACGCCTGGCAGCACCGGCAGTGGGTCATAAAGAACTACAACCTATTTGACGATGAGCTGCATTACGTGGACCGGTTAATATCGGAGGATATGCGCAACAATTCCGCTTGGAACGAGCGGTTTCTTCGTGCTGAAGCACGGCGGTCTTCACGCCGGA ]
[+] EMBL BM603288 [ ccGCAAAGAAACAACACACGGTCCG TTTTCG GCAATAAATACGGGTTCCGGGTGGAAAAAACTGGTCACAAAGG TTCCGCTTCCCCACAAAACGGTATCCACTCGGTGTGCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGGGCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGGGAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTGCGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCGGCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGTGACATTCTGAAAGCGCTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCGAAAAACTACCAGGTGTGGCATCATCGGCGCGTCATCGTCGAATGGTTGGACGACCCATCGAGCGAGCTGACACTGACGGAGAGCATTCTCGACATGGATGCGAAGAACTATCACGCCTGGCAGCACCGGCAGTGGGTCATAAAGAACTACAACCTATTTGACGATGAGCTGCATTACGTGGACCGGTTAATATCGGAGGATATGCGCAACAATTCCGCTTGGAACGAGCGG TTCTTCGTGCTGAAGCACGG ]
[+] EMBL CNS09PET [ AAGAAACGACACACGGTCCGTTTTTCG GCAATAAATACGGGTTCCGGGTGGAAAAAACTGGTCACAAAGG TTCCGCTTCCCCACAAAACGGTATCCACTCGGTGTGCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGGGCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGGGAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTGCGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCGGCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCGCTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCGAAAAACTACCAGGTGTGGCATCATCGGCGCGTCATCGTCGAATGGTTGGACGACCCATCGAGCGAGCTGACACTGACGGAGAGCATTCTCGACATGGATGCGAAGAACTATCACGCCTGGCAGCACCGGCAGTGGGTCATAAAGAACTACAACCTATTTGACGATGAGCTGCATTACGTGGACCGGTTAATATCGGAGGATATGCGCAACACTTCCGCTT ]
[+] EMBL CNS09EQF [ GAAACGACACACGGTCCG TTTTCGCGCAATAAATACGGGTTCCGGGTGGAAAACACTGGTCACAAAGG TTCCGCTTCCCCACAAAACGGTATCCACTCGGTGTGCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGGGCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGGGAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTGCGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCGGCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCGCTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCGAAAAACTACCAGGTGTGGCATCATCGGCGCGTCATCGTCGAATGGTTGGACGACCCATCGAGCGAGCTGACACTGACGGAGAGCATTCTCGACATGGATGCGAAGAACTATCACGCCTGGCAGCACCGGCAGTGGGTCATAAAGAACTACAACCTATTTGACGATGAGCTGCATTACGTGGACCGGTTAATATCGGAGGATATGCGCAACAATTCCGCTTGGAACGAGCGG TTCTTCGTGCTGAAGCACGGCGG CTTCACGCCGGAGGTGCTCGAGCGCGAGGTTAAGTACGTCATCACGC]
[+] EMBL BX604610 [ ACACACGGTCCG TTTTCG GCAATAAATACGGGTTCCGGGTGGAAAAAACTGGTCACAAAGG TTCCGCTTCCCCACAAAACGGTATCCACTCGGTGTGCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGGGCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGGGAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTGCGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCGGCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCGCTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCGAAAAACTACCAGGTGTGGCATCATCGGCGCGTCATCGTCGAATGGTTGGACGACCCATCGAGCGAGCTGACACTGACGGAGAGCATTCTCGACATGGATGCGAAGAACTATCACGCCTGGCAGCACCGGCAGTGGGTCATAAAGAACTACAACCTATTTGACGATGAGCTGCATTACGTGGACCGGTTAATATCGGAGGATATGCGCAACAATTCCG ]
[+] EMBL BX606543 [ GTGTGCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGGGCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGGGAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTGCGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCGGCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCGCTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCGAAAAACTACCAGGTGTGGCATCATCGGCGCGTCATCGTCGAATGGTTGGACGACCCATCGAGCGAGCTGACACTGACGGAGAGCATTCTCGACATGGATGCGAAGAACTATCACGCCTGGCAGCACCGGCAGTGGGTCATAAAGAACTACAACCTATTTGACGATGAGCTGCATTACGTGGACCGGTTAATATCGGAGGATATGCGCAACAATTCCGCTTGGAACGAGCGG TTCTTCGTGCTGAAGCACG ]
consensusID : consensus_8200#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 496 fasta sequence
[AATCGCCCGAGGNCACACACGGTCCGTTTTCGGCAATAAATACGGGTTCCGGGTGGAAAAAACTGGTCACAAAGGTTCCGCTACAATACAAAACGGTATCCACTCGGTGTGCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGGGCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGGGAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTGCGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCGGCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCGCTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCGAAAAACTACCAGGTGTGGCATCATCGGCGCGTCATC]
[+] EMBL AL932525 [AATCGCCCGAGGNCACACACGGTCCGTTTTCGGCAATAAATACGGGTTCCGGGTGGAAAAAACTGGTCACAAAGGTTCCGCTACAATACAAAACGGTATCCACTCGGTGTGCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGGGCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGGGAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTGCGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCGGCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCGCTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCGAAAAACTACCAGGTGTGGCATCATCGGCGCGTCATC]
[+] EMBL AGA284795 [ AAACGGTATCCACTCGGTGCCCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGGGCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGGGAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTGCGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCGGCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCGCTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCGGAAAACTACCAGGTGTGGCATCATCGGCG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8200#0 CTGGATTCACATTAGAAAGAAAAGCAAAGAAACAACACACGGTCCGTTTTCGGCAATAAA 60
consensus_8200#1 -------------------AATCGCCC-GAGGNCACACACGGTCCGTTTTCGGCAATAAA 40
** ** ** **************************
consensus_8200#0 TACGGGTTCCGGGTGGAAAAAACTGGTCACAAAGGTTCCGCTTCCCCACAAAACGGTATC 120
consensus_8200#1 TACGGGTTCCGGGTGGAAAAAACTGGTCACAAAGGTTCCGCTACAATACAAAACGGTATC 100
****************************************** * *************
consensus_8200#0 CACTCGGTGTGCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGG 180
consensus_8200#1 CACTCGGTGTGCGCGATGGCAGACGGTAACAGTTCCGATGAGGATTTCTCCGACGATTGG 160
************************************************************
consensus_8200#0 GCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGG 240
consensus_8200#1 GCGCTGTACTCGCGCCGGCCGGAGTGGTCCGACATTACACCACTTCCCCAGGACGACGGG 220
************************************************************
consensus_8200#0 GAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTG 300
consensus_8200#1 GAGAATCCGGTCGTGATGATCCAGTACAGTGAGCGCTTTAACGATGTGTTTGGCTATCTG 280
************************************************************
consensus_8200#0 CGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCG 360
consensus_8200#1 CGTGCGATCATATCGAGGCAGGAAAAGTCCCAGCGCGCCCTCGAGCTGACGAAGGACGCG 340
************************************************************
consensus_8200#0 GCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCG 420
consensus_8200#1 GCCAAGCTGAATGCCGCCAACTACACCGTGTGGCAGTACCGGCGGGACATTCTGAAAGCG 400
************************************************************
consensus_8200#0 CTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCG 480
consensus_8200#1 CTCAACGCCGACCTGTACGAGGAGCTGTCCTACATCGGGCGGGTCATTGCGGACAATCCG 460
************************************************************
consensus_8200#0 AAAAACTACCAGGTGTGGCATCATCGGCGCGTCATCGTCGAATGGTTGGACGACCCATCG 540
consensus_8200#1 AAAAACTACCAGGTGTGGCATCATCGGCGCGTCATC------------------------ 496
************************************
consensus_8200#0 AGCGAGCTGACACTGACGGAGAGCATTCTCGACATGGATGCGAAGAACTATCACGCCTGG 600
consensus_8200#1 ------------------------------------------------------------
consensus_8200#0 CAGCACCGGCAGTGGGTCATAAAGAACTACAACCTATTTGACGATGAGCTGCATTACGTG 660
consensus_8200#1 ------------------------------------------------------------
consensus_8200#0 GACCGGTTAATATCGGAGGATATGCGCAACAATTCCGCTTGGAACGAGCGGTTCTTCGTG 720
consensus_8200#1 ------------------------------------------------------------
consensus_8200#0 CTGAAGCACGGCGGCTTCACGCCGGAGGTGCTCGAGCGCGAGGTTAAGTACGTCATCACG 780
consensus_8200#1 ------------------------------------------------------------
consensus_8200#0 C 781
consensus_8200#1 -
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||