These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8201#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 947 fasta sequence [TCGACCCACG-GTCCGCATTTCCGCACCGAAAAACACGCACCGACGA-GAAAGACGGTCAATCGGTGCTGTGCCGCGAAACGGAAAACCTCAAGCCGACCGAGTGTATTCTGCTCCAAAGAAAAAGACCAACCAAGTCGAAAACTGTGTGCGTCTAACAAATATCTGTGCGCGTGTGTGTGTTTCCGGTGTGTGAGCGTGTGTGTCAGTGTGTGTCCTTCGTCTCCCTTTAAACGGGGAACAATTTAGCTGTAAACTACCTACCTCCTCCCACCCTGTTCGGAAGCCTTTTCCTGCATGACCTTTTGTGAATCGTCGGAATCGTTGCGTTGCTGTTACGGCAAGGATTGACCATTAGCCATTAGCTAGCCCTCTAGGAGTGTGGTGTGACACACAGTGCCTGCCGAGCGTCGTTGCCGCTTATTTGTTTTTGTTTCGTGCCGCCCACTGCCACAAACAACGTCGTCGACGATGTCCGATTCCGGCAAGTCCTTTTCCAACGTGGAAACGTCCGGCTATGTCGGGTTTGCCAACCTGCCGAACCAGGTGCACCGGAAGTCGGTG-AAGAAAGGGTTCGAGTTCACGCTGATGGTCGTCGGTGAGTCTGGCCTCGGTAAATCTACCCTGGTGAACAGCCTGTTCCTGAGCGATCTCTACCCGGAGCGCGTCATACCGAATGCGGTCGAAAAGCAAAACATGACGGTCAAGCTGGACGCGTCCACGGTGGAGATTGAGGAGCGTGGCGTCAAGCTGCGGCTGACCGTCGTCGATACGCCCGGGTTCGGCGATGCCATCGATAACAGCGATAGCTTCAGCGCGATCCTCGAGTACATCGACGAACAGTACGAGCGGTTTCTGCGCGACGAAAGTGGCCTGAATCGGCGCAACATTGTCGACAACAGGATACACTGCTGCTTCTACTTCATCTCGCCGGTCGGCCATGGTATGAA] [+] EMBL BM657123 [TCGACCCACGCGTCCGCATTTCCGCACCGAAAAACACGCACCGACGATTAAAGACGGACAATCGGTGCTGTGCCGCGAAACGGAAAACCTCAAGCCGACCGAGTGTATTCTGCTCCAAAGAAAAAGACCAACCAAGTCGAAAACTGTGTGCGTCTAACAAATATCTGTGCGCGTGTGTGTGTTTCCGGTGTGTGAGCGTGTGTGTCAGTGGGTGTC ] [+] EMBL BM648042 [ CCGCATTTCCGCACCGAAAAACACGCACCGACGA GAAAGACGGTCAATCGGTGCTGTGCCGCGAAACGGAAAACCTCAAGCCGACCGAGTGTATTCTGCTCCAAAGAAAAAGACCAACCAAGTCGAAAACTGTGTGCGTCTAACAAATATCTGTGCGCGTGTGTGTGTTTCCGGTGTGTGAGCGTGTGTGTCAGTGTGTGTCCTTCGTCTCCCTTTAAACGGGGAACAATTTATCTGTAAACTACCTACCTCCTCCCACCCTGTTCGGAAGCCTTTTCCTGCATGACCTTTTGTGAATCGTCGGAATCGTTGCGTTGCTGTTACGGCAAGGATTGACCATTAGCCATTAACTAGCCCTCTAGGAGTGTGGTGTGACACACAGTGCCTGCCGAGCGTCGTTGCCGCTTATTTGTTTTTGTTTCGTGCCGCCCACTGCCACAAACAACGTCGTCGACGATGTCCGATTCCGGCAAGTCCTTTTCCAACGTGGAAACGTCCGGCTATGTCGGGTTTGCCAACCTGCCGAACCAGGTGCACCGGAAGTCGGTGCAAGAAAGGGTTCGAGTTCACGCTGATGGTCGTCGGTGAGTCTGGCCTCGGTAAATCTACCCTGGTGAACAGCCTGGTCCTGAGCGATCTCTACCCG ] [+] EMBL BM633596 [ CCG ATTTCCGCACCGAAAAACACGCACCGACGA GAAAGACGGTCAATCGGTGCTGTGCCGCGAAACGGAAAACCTCAAGCCGACCGAGTGTATTCTGCCCCAAAGAAAAAGACCAACCAAGTCGAAAACTGTGTGCGTCTAACAAATATCTGTGCGCGTGTGTGTGTTTCCGGTGTATGAGCGTGTGTGTCAGTGTGTGTCCTTCGTCTCCCTTTAAACGGGGAACAATTTAGCTGTAAACTACCTACCTCCTCCCACCCTGTTCGGAAGCCTTTTCCTGCATGACCTTTTGTGAATCGTCGGAATCGTTGCGTTGCTGTTACGGCAAGGATTGACCATTAGCCATTAGCTAGCCCTCTAGGAGTGTGGTGTGACACACAGTGCCTGCCGACCGTCG ] [+] EMBL BM587780 [ ccgCGCGAAACGGAAAACCTCAAGCCGACCGAGTGTATTCTGCTCCAAAGAAAAAGACCAACCAAGTCGAAAACTGTGTGCGTCTAACAAATATCTGTGCGCGTGTGTGTGTTTCCGGTGTGTGAGCGTGTGTGTCAGTGTGTGTCCTTCGTCTCCCTTTAAACGGGGAACAATTTAGCTGTAAACTACCTACCTCCTCCCACCCTGTTCGGAAGCCTTTTCCTGCATGACCTTTTGTGAATCGTCGGAATCGTTGCGTTGCTGTTACGGCAAGGATTGACCATTAGCCATTAGCTAGCCCTCTAGGAGTGTGGTGTGACACACAGTGCCTGCCGAGCGTCGTTGCCGCTTATTTGTTTTTGTTTCGTGCCGCCCACTGCCACAAACAACGTCGTCGACGATGTCCGATTCCGGCAAGTCCTTTTCCAACGTGGAAACGTCCGGCTATGTCGGGTTTGCCAACCTGCCGAACCAGGTGCACCGGAAGTCGGTG AAGAAAGGGTTCGAGTTCACGCTGATGGTCGTCGGTGAGTCTGGCCTCGGTAAATCTACCCTGGTGAACAGCCTGTTCCTGAGCGATCTCTACCCGGAGCGCGTCATACCGAATGCGGTCGAAAAGCAAAACATGACGGTCAAGCTGGACGCGTCCACGGTGGAGAT ] [+] EMBL BM577602 [ CCATTAGCCATTATCTATCCCTCTATGAGTGTGGTGTGACACACAGTGCCTGCCGAGCGTCGTTGCCGCTTATTTGTTTTTGTTTCGTGCCGCCCACTGCCACAAACAACGTCGTCGACGATGTCCGATTCCGGCAAGTCCTTTTCCAACGTGGAAACGTCCGGCTATGTCGGGTTTGCCAACCTGCCGAACCAGGTGCACCGGAAGTCGGTG AAGAAAGGGTTCGAGTTCACGCTGATGGTCGTCGGTGAGTCTGGCCTCGGTAAATCTACCCTGGTGAACAGCCTGTTCCTGAGCGATCTCTACCCGGAGCGCGTCATACCGAATGCGGTCGAAAAGCAAAACATGACGGTCAAGCTGGACGCGTCCACGGTGGAGATTGAGGAGCGTGGCGTCAAGCTGCGGCTGACCGTCGTCGATACGCCCGGGTTCGGCGATGCCATCGATAACAGCGATAGCTTCAGCGCGATCCTCGAGTACATCGACGAACAGTACGAGCGGTTTCTGCGCGACGAAAGTGGCCTGAATCGGCGCAACATTGTCGACAACAGGATACACTGCTGCTTCTACTTCATCTCGCCGGTCGGCCATGGTATGAA] [+] EMBL AGA284780 [ CTCTAGGAGTGTGGTGTGACACACAGTGCCTGCCGAGCGTCGTTGCCGCTTATTTGTTTTTGTTTCGTGCCGCCCACTGCCACAAACAACGTCGTCGACGATGTCCGATTCCGGCAAGTCCTTTTCCAACGTGGAAACGTCCGGCTATGTCGGGTTTGCCAACCTGCCGAACCAGGTGCACCGGAAGTCGGTG AAGAAAGGGTTCGAGTTCACGCTGATGGTCGTCGGTGAGTCTGGCCTCGGTAAATCTACCCTGGTGAACAGCCTGTTCCTGAGCGATCTCTACCCGGAGCGCGTCATACCGAATGCGGTCGAAAAGCAAAACATGACGGTCAAGCTGG ] consensusID : consensus_8201#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence [CGCCCCGAGGNNNACATTTCCGCACCGAAAAACACGCACCGACGAGAAAGACGGTCAATCGGTGCTGTGCCGCGAAACGGAAAACCTCAAGCCGACGGAGTGTATTCTGCCCCAAAGAAAAAGACCAACCAAGTCGAAAACTGTGTGCGTCTAACAAATATCTGTGCGCGTGTGTGTGTTTCCGGTGTGTGAGCGTGTGTGTCAGTGTGTGTCCTTCGTCTCCCTTTAAACGGGGAACAATTTAGCTGTAAACTACCTACCTCCTCCCACCCTGTTCGGAAGCCTTTTCCTGCATGACCTTTTGTGAATCGTCGGAATCGTTGCGTTGCTGTTACGGCAAGGATTGACCATTAGCCACTTAACTAGCCCTCTAGGAGTGTGGTGTGACACACAGTGCCTGCCGAGCGTCGTTGCCGCTTATTTGTTTTTGTTTCGTGCCGCCCACTGCCACAAACAACGTCGTCGACGATGTCCGATTCCGGCAAGTCCTTTTCCAACGTGGAAACGTCCGGCTATGTCGGGTTTGCCAACCTGCCGAACCAGGTGCACCGGAAGTCGGTGAAGAAAGGGTTCGAGTTCACGCTGATGGT] [+] EMBL AL930619 [CGCCCCGAGGNNNACATTTCCGCACCGAAAAACACGCACCGACGAGAAAGACGGTCAATCGGTGCTGTGCCGCGAAACGGAAAACCTCAAGCCGACGGAGTGTATTCTGCCCCAAAGAAAAAGACCAACCAAGTCGAAAACTGTGTGCGTCTAACAAATATCTGTGCGCGTGTGTGTGTTTCCGGTGTGTGAGCGTGTGTGTCAGTGTGTGTCCTTCGTCTCCCTTTAAACGGGGAACAATTTAGCTGTAAACTACCTACCTCCTCCCACCCTGTTCGGAAGCCTTTTCCTGCATGACCTTTTGTGAATCGTCGGAATCGTTGCGTTGCTGTTACGGCAAGGATTGACCATTAGCCACTTAACTAGCCCTCTAGGAGTGTGGTGTGACACACAGTGCCTGCCGAGCGTCGTTGCCGCTTATTTGTTTTTGTTTCGTGCCGCCCACTGCCACAAACAACGTCGTCGACGATGTCCGATTCCGGCAAGTCCTTTTCCAACGTGGAAACGTCCGGCTATGTCGGGTTTGCCAACCTGCCGAACCAGGTGCACCGGAAGTCGGTGAAGAAAGGGTTCGAGTTCACGCTGATGGT] consensusID : consensus_8201#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 477 fasta sequence [AATGCCGAGNNGAGATTGACATTAGCATTACTAACCTCTATGATGTTGTGTGCACACAGTGCTGCGAGCGTCTTGCGTTATTTGTTTGTTCGTGCGCCANTGGCACAAACAACGTCTCGACGATGTNCGATTCCGGCAGTCCTTTTCCAACGTGGAAACGTCCGGCTATGTCGGGTTTTGGCAAACTGGCGAACAGTGNACCGGAAGTCGGTGAAAAAGGGTTCGAGTTCACGCTGATNGTCGTCGGGTGAGTCTGGNCTCGGTAAATCTACCCTGGTGTTGAACAGCCTGTTCCTNAGCTGATCTCTACCCGGAGCTGCGTCATACCGAATGCGGTCGAAAAGCCAAAACATGACGGTCAAGCTGGACGCGTCCACCGGTGGAGATTGAGTGAGCGTGGCGTCAAGCTGCTGTGCTTGACCGTCGTCGATACGCCCCGGGTTCGGCGATGCCATCGATAACAGCGATAGCTTCAGC] [+] EMBL AL931202 [AATGCCGAGNNGAGATTGACATTAGCATTACTAACCTCTATGATGTTGTGTGCACACAGTGCTGCGAGCGTCTTGCGTTATTTGTTTGTTCGTGCGCCANTGGCACAAACAACGTCTCGACGATGTNCGATTCCGGCAGTCCTTTTCCAACGTGGAAACGTCCGGCTATGTCGGGTTTTGGCAAACTGGCGAACAGTGNACCGGAAGTCGGTGAAAAAGGGTTCGAGTTCACGCTGATNGTCGTCGGGTGAGTCTGGNCTCGGTAAATCTACCCTGGTGTTGAACAGCCTGTTCCTNAGCTGATCTCTACCCGGAGCTGCGTCATACCGAATGCGGTCGAAAAGCCAAAACATGACGGTCAAGCTGGACGCGTCCACCGGTGGAGATTGAGTGAGCGTGGCGTCAAGCTGCTGTGCTTGACCGTCGTCGATACGCCCCGGGTTCGGCGATGCCATCGATAACAGCGATAGCTTCAGC] consensusID : consensus_8201#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 147 fasta sequence [GGCCCCCAGGANTTTTGACATTTCCGCACCGAAAAACACGCAACCGGTACCGCACGAATAGACGGTCAATCGGTGCTGTGCCGCGAAACGGAAAACCTCAAGCCGACGGACTGTATTCTGGCCCATAGAAAAAGACAACAAGTCGAA] [+] EMBL AL697598 [GGCCCCCAGGANTTTTGACATTTCCGCACCGAAAAACACGCAACCGGTACCGCACGAATAGACGGTCAATCGGTGCTGTGCCGCGAAACGGAAAACCTCAAGCCGACGGACTGTATTCTGGCCCATAGAAAAAGACAACAAGTCGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8201#1 ----------------CGCCCCGAGGNNN----ACATTTCCGCACCGAAAAACACGCA-- 38 consensus_8201#3 ----------------GGCCCCCAGGANTTTTGACATTTCCGCACCGAAAAACACGCAAC 44 consensus_8201#0 ---------------TCGACCCACGGTCC----GCATTTCCGCACCGAAAAACACGCA-- 39 consensus_8201#2 AATGCCGAGNNGAGATTGACATTAGCATTACTAACCTCTATGATGTTGTGTGCACACAGT 60 * * * * * * * *** ** consensus_8201#1 -----CCGACGAGAAAGACGGTCAATCGGTGCTGTGCCGC-GAAACGGAAAACCTCAAGC 92 consensus_8201#3 CGGTACCGCACGAATAGACGGTCAATCGGTGCTGTGCCGC-GAAACGGAAAACCTCAAGC 103 consensus_8201#0 -----CCGACGAGAAAGACGGTCAATCGGTGCTGTGCCGC-GAAACGGAAAACCTCAAGC 93 consensus_8201#2 GCTGCGAGCGTCTTGCGTTATTTGTTTGTTCGTGCGCCANTGGCACAAACAACGTCTCGA 120 * * * * * * ** *** * ** * *** ** * consensus_8201#1 CGACGGAGTGTATTC-TGCCCCAAAGAAAAAGACCAACCAAGTCGAAAACTGTGTGCGTC 151 consensus_8201#3 CGACGGACTGTATTC-TGGCCCATAGAAAAAGACAA--CAAGTCGAA------------- 147 consensus_8201#0 CGACCGAGTGTATTC-TGCTCCAAAGAAAAAGACCAACCAAGTCGAAAACTGTGTGCGTC 152 consensus_8201#2 CGATGTNCGATTCCGGCAGTCCTTTTCCAACGTGGAAACGT-CCGGCTATGTCGGGTTTT 179 *** * ** ** * * * ** consensus_8201#1 TAACAAATATCTGTGCGCGTGTGTGTGTTTCCGGTGTGTGAGCGTGTGTGTCAGTGTGTG 211 consensus_8201#3 ------------------------------------------------------------ consensus_8201#0 TAACAAATATCTGTGCGCGTGTGTGTGTTTCCGGTGTGTGAGCGTGTGTGTCAGTGTGTG 212 consensus_8201#2 GGCAAACTGGCGAACAGTGNACCGGAAGTCGGTGAAAAAGGGTTCGAGTTCACGCTGATN 239 consensus_8201#1 TCCTTCGTCTCCCTTTAAACGGGGAACAATTTAGCTGTAAACTACCTACCTCCTCCCACC 271 consensus_8201#3 ------------------------------------------------------------ consensus_8201#0 TCCTTCGTCTCCCTTTAAACGGGGAACAATTTAGCTGTAAACTACCTACCTCCTCCCACC 272 consensus_8201#2 GTCGTCGGGTGAGTCTGGNCTCGGTAAATCTACCCTGGTGTTGAACAGCCTGTTCCTNAG 299 consensus_8201#1 CTGTTCGGAAGCCTTTTCC-TGCATGACCTTTTGTGAATCGTCGGAATCGTTGCGTTGCT 330 consensus_8201#3 ------------------------------------------------------------ consensus_8201#0 CTGTTCGGAAGCCTTTTCC-TGCATGACCTTTTGTGAATCGTCGGAATCGTTGCGTTGCT 331 consensus_8201#2 CTGATCTCTACCCGGAGCTGCGTCATACCGAATGCGGTCGAAAAGCCAAAACATGACGGT 359 consensus_8201#1 GTTACGGCAAGGATTGACCATTAGCCACTTAACTAGCCCTCTAGGAGTGTGGTGTGACAC 390 consensus_8201#3 ------------------------------------------------------------ consensus_8201#0 GTTACGGCAAGGATTGACCATTAGCCA-TTAGCTAGCCCTCTAGGAGTGTGGTGTGACAC 390 consensus_8201#2 CAAGCTGGACGCGTCCACCGGTGGAGATTGAGTGAGCGTGGCGTCAAGCTGCTGTGCTTG 419 consensus_8201#1 ACAGTGCCTGCCGAGCGTCGTTGCCGCTTATTTGTTTTTGTTTCGTGCCGCCCACTGCCA 450 consensus_8201#3 ------------------------------------------------------------ consensus_8201#0 ACAGTGCCTGCCGAGCGTCGTTGCCGCTTATTTGTTTTTGTTTCGTGCCGCCCACTGCCA 450 consensus_8201#2 ACCGTCGTCGATACGCCCCGGGTTCGGCGATGCCATCGATAACAGCGATAGCTTCAGC-- 477 consensus_8201#1 CAAACAACGTCGTCGACGATGTCCGATTCCGGCAAGTCCTTTTCCAACGTGGAAACGTCC 510 consensus_8201#3 ------------------------------------------------------------ consensus_8201#0 CAAACAACGTCGTCGACGATGTCCGATTCCGGCAAGTCCTTTTCCAACGTGGAAACGTCC 510 consensus_8201#2 ------------------------------------------------------------ consensus_8201#1 GGCTATGTCGGGTTTGCCAACCTGCCGAACCAGGTGCACCGGAAGTCGGTGAAGAAAGGG 570 consensus_8201#3 ------------------------------------------------------------ consensus_8201#0 GGCTATGTCGGGTTTGCCAACCTGCCGAACCAGGTGCACCGGAAGTCGGTGAAGAAAGGG 570 consensus_8201#2 ------------------------------------------------------------ consensus_8201#1 TTCGAGTTCACGCTGATGGT---------------------------------------- 590 consensus_8201#3 ------------------------------------------------------------ consensus_8201#0 TTCGAGTTCACGCTGATGGTCGTCGGTGAGTCTGGCCTCGGTAAATCTACCCTGGTGAAC 630 consensus_8201#2 ------------------------------------------------------------ consensus_8201#1 ------------------------------------------------------------ consensus_8201#3 ------------------------------------------------------------ consensus_8201#0 AGCCTGTTCCTGAGCGATCTCTACCCGGAGCGCGTCATACCGAATGCGGTCGAAAAGCAA 690 consensus_8201#2 ------------------------------------------------------------ consensus_8201#1 ------------------------------------------------------------ consensus_8201#3 ------------------------------------------------------------ consensus_8201#0 AACATGACGGTCAAGCTGGACGCGTCCACGGTGGAGATTGAGGAGCGTGGCGTCAAGCTG 750 consensus_8201#2 ------------------------------------------------------------ consensus_8201#1 ------------------------------------------------------------ consensus_8201#3 ------------------------------------------------------------ consensus_8201#0 CGGCTGACCGTCGTCGATACGCCCGGGTTCGGCGATGCCATCGATAACAGCGATAGCTTC 810 consensus_8201#2 ------------------------------------------------------------ consensus_8201#1 ------------------------------------------------------------ consensus_8201#3 ------------------------------------------------------------ consensus_8201#0 AGCGCGATCCTCGAGTACATCGACGAACAGTACGAGCGGTTTCTGCGCGACGAAAGTGGC 870 consensus_8201#2 ------------------------------------------------------------ consensus_8201#1 ------------------------------------------------------------ consensus_8201#3 ------------------------------------------------------------ consensus_8201#0 CTGAATCGGCGCAACATTGTCGACAACAGGATACACTGCTGCTTCTACTTCATCTCGCCG 930 consensus_8201#2 ------------------------------------------------------------ consensus_8201#1 ----------------- consensus_8201#3 ----------------- consensus_8201#0 GTCGGCCATGGTATGAA 947 consensus_8201#2 ----------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||