These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8205#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 540 fasta sequence [CCGCCCACGCGTCCGA------CCTGTTCGTGATTCGACGAGCCAGTCATCCCAGCAAAAGCTAGCAAAAGATGTCTCTTGGACCGTTCTTCCGCTCACCGTTCACCGACCTGACCGCGTCGATGGTCAACTTCCAGCAGTACGACAAGTGCGGCGAGCTGGAGATGGCTTCGATCGACTGCCTCGAAGCGTACGGTACCGTGCGCGGTGCGAAGAAGTGTGCCGATCTGCTGGCCGACTTCCAGGAGTGCGCGTTCATGACGAAACAGATCGCTAGATTCCGGGCAATGCGAATGGAAAGACATCGTCAGGGATGGAACGGTGAGCGCAAGGGCGATGGATATTACGCACCACCGCCGCGTGTCGATGCCTACTAG-AGAGTGCGTTAGCTGTGAGCACATCCGCAGCCCGGGAGGCACCACCACTAGAGGAATCCGCCTATTCCTTGTAAATTAATATTGAAATACATTCATCCGTTATATAGACAAGACCGGGAATTGTTTCCAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCTGTGGT] [+] EMBL BM584058 [CCGCCCACGCGTCCGAAACATCCCTGTTCGTGATTCGACGAGCCAGTCATCCCAGCAAAAGCTAGCAAAAGATGTCTCTTGGACCGTTCTTCCGCTCACCGTTCACCGACCTGACCGCGTCGATGGTCAACTTCCAGCAGTACGACAAGTGCGGCGAGCTGGAGATGGCTTCGATCGACTGCCTCGAAGCGTACGGTACCGTGCGCGGTGCGAAGAAGTGTGCCGATCTGCTGGCCGACTTCCAGGAGTGCGCGTTCATGACGAAACAGATCGCTAGATTCCGGGCAATGCGAATGGAAAGACATCGTCAGGGATGGAACGGTGAGCGCAAGGGCGATGGATATTACGCACCACCGCCGCGTGTCGATGCCTACTAGAAGAGTGCGTTAGCTGTGAGCACATCCGCAGCCCGGGAGGCACCACCACTAGAGGAATCCGCCTATTCCTTGTAAATTAATATTGAAATACATTCATCCGTTATATAG ] [+] EMBL BM587657 [CCGCCCACGCGTCCG CCTGTTCGTGATTCGACGAGCCAGTCATCCCAGCAAAAGCTAGCAAAAGATGTCTCTTGGACCGTTCTTCCGCTCACCGTTCACCGACCTGACCGCGTCGATGGTCAACTTCCAGCAGTACGACAAGTGCGGCGAGCTGGAGATGGCTTCGATCGACTGCCTCGAAGCGTACGGTACCGTGCGCGGTGCGAAGAAGTGTGCCGATCTGCTGGCCGACTTCCAGGAGTGCGCGTTCATGACGAAACAGATCGCTAGATTCCGGGCAATGCGAATGGAAAGACATCGTCAGGGATGGAACGGTGAGCGCAAGGGCGATGGATATTACGCACCACCGCCGCGTGTCGATGCCTACTAG AGAGTGCGTTAGCTGTGAGCACATCCGCAGCACGGGAGGCACCACCACTAGAGGAATCCGTCTATTCCTTGTAAATTAATATTGAAATACATTCATCCGTTATATAGACAAGAC ] [+] EMBL BM608243 [CCGCGGACGCGTGGGATC CCTGTTCGTGATTCGACGAGCCAGTCATCCCAGCAAAAGCTAGCAAAAAATGTCTCTTGGACCGTTCTTCCGCTCACCGTTCACCGACCTGACCGCGTCGATGGTCAACTTCCAGCAGTACGACAAGTGCGGCGAGCTGGAGATGGCTTCGATCGACTGCCTCGAAGCGTACGGTACTGTGCGCGGTGCGAAGAAGTGTGCCGATCTGCTGGCCGACTTCCAGGAGTGCGCGTTCATGACGAAACAGATCGCTAGATTCCGGGCAATGCGAATGGAAAGACATCGTCAGGGATGGAACGGTGAGCGCAAGGGTGATGGATATTACGCACCACCGCCGCGTGTCGATGCCTACTAG AGAGTGCGTGAGCTGTGAGCACATCCGCAGCCCGGGAGGCACCACCACTAGAGGAATGCGCCTATTCCTTGTAAATTAATATTGAAATACATTCATCCGTTATATAGAC ] [+] EMBL CNS08SJ0 [ TGTTCGTGATTCGACGAGCCAGTCATCCCAGCAAAAGCTAGCAAAAGATGTCTCTTGGACCGTTCTTCCGCTCACCGTTCACCGACCTGACCGCGTCGATGGTCAACTTCCAGCAGTACGACAAGTGCGGCGAGCTGGAGATGGCTTCGATCGACTGCCTCGAAGCGTACGGTACCGTGCGCGGTGCGAAGAAGTGTGCCGATCTGCTGGCCGACTTCCAGGAGTGCGCGTTCATGACGAAACAGATCGCTAGATTCCGGGCAATGCGAATGGAAAGACATCGTCAGGGATGGAACGGTGAGCGCAAGGGCGATGGATATTACGCACCACCGCCGCGTGTCGATGCCTACTAG AGAGTGCGTTA CTGTGAGCACATCCGCAGCACGGGAGGCACCACCACTAGAGGAATCCGTCTATTCCTTGTAAATTAATATTGAAATACATTCATCCGTTATATAGACAATTTCGGGAATTGTTTCCAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCTGTGGT] [+] EMBL BM592923 [ ccgCGTGATTCGACGAGCCAGTCATCCCAGCAAAAGCTAGCAAAAGATGTCTCTTGGACCGTTCTTCCGCTCACCGTTCACCGACCTGACCGCGTCGATGGTCAACTTCCAGCAGTACGACAAGTGCGGCGAGCTGGAGATGGCTTCGATCGACTGCCTCGAAGCGTACGGTACCGTGCGCGGTGCGAAGAAGTGTGCCGATCTGCTGGCCGACTTCCAGGAGTGCGCGTTCATGACGAAACAGATCGCTAGATTCCGGGCAATGCGAATGGAAAGACATCGTCAGGGATGGAACGGTGAGCGCAAGGGCGATGGATATTACGCACCACCGCCGCGTGTCGATGCCTACTAGAAGAGTGCGTTAGCTGTGAGCACATCCGCAGCCCGGGAGGCACCACCACTAGAGGAATCCGCCTATTCCTTGTAAATTAATATTGAAATACATTCATCCGTTATATAGAC ] [+] EMBL BM623416 [ ccgGCCAGTCATCCCAGCAAAAGCTAGCAAAAGATGTCTCTTGGACCGTTCTTCCGCTCACCGTTCACCGACCTGACCGCGTCGATGGTCAACTTCCAGCAGTACGACAAGTGCGGCGAGCTGGAGATGGCTTCGATCGACTGCCTCGAAGCGTACGGTACCGTGCGCGGTGCGAAGAAGTGTGCCGATCTGCTGGCCGACTTCCAGGAGTGCGCGTTCATGACGAAACAGATCGCTAGATTCCGGGCAATGCGAATGGAAAGACATCGTCAGGGATGGAACGGTGAGCGCAAGGGCGATGGATATTACGCACCACCGCCGCGTGTCGATGCCTACTAG AGAGTGCGTTAGCTGTGAGCACATCCGCAGCACGGGAGGCACCACCACTAGAGGAATCCGTCTATTCCTTGTAAATTAATATTGAAATACATTCATCCGTTATATAGAC ] consensusID : consensus_8205#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 505 fasta sequence [GAGGACTGTTGGCCTACTGGAAGGAAAAAAAACATCCCTGTTCGT-GATTCGACGAGCCAGTCATCCCAGCAAAAGCTAGCAAAAGATGTCTCTTGGACCGTTCTTCCGCTCACCGTTCACCGACCTGACCGCGTCGATGGTCAACTTCCAGCAGTACGACAAGTGCGGCGAGCTGGAGATGGCTTCGATCGACTGCCTCGAAGCGTACGGTACCGTGCGCGGTGCGAAGAAGTGTGCCGATCTGCTGGCCGACTTCCAGGAGTGCGCGTTCATGACGAAACAGATCGCTAGATTCCGGGCAATGCGAATGGAAAGACATCGTCAGGGATGGAACGGTGAGCGCAAGGGTGATGGATATTACGCACCACCGCCGCGTGTCGATGCCTACTAGAGAGTGCGTTAGCTGTGAGCACATCCGCAGCCCGGGAGGCACCACCACTAGAGGAATCCGCCTATTCCTTGTAAATTAATATTGAAATACATTCATCCGTTATATAGACAAGCT] [-] EMBL CNS08SJ1 [GAGGACTGTTGGCCTACTGGAAGGAAAAAAAACATCCCTGTTCGT GATTCGACGAGCCAGTCATCCCAGCAAAAGCTAGCAAAAGATGTTTCTTGGACCGTTTTTCCGCTCACCGTTCACCGACCTGACCGCGTCGATGGTCAACTTCCAGCAGTACGACAAGTGCGGCGGGCTGGAGATGGCTTCGATCAACTGCCTCGAAGCGTACGGTACCGTGCGCGGTGCGAAGAAGTGTGCCGGTCTGCTGGCCGACTTCCAGGAGTGCGCGTTCATGACGAAACAGATCGCTAGATTCCGGGCAATGCGAATGGAAAGACATCGTCAGGGATGGAACGGTGAGCGCAAGGGCGATGGGTTTTACGCACCACCGCCGCGTGTCGATGCCTACTAGAGAGTGCGTTAGCTGTGAGAACATCCGCAGCACGGGAGGCACCACCACTAGAGGAATCCGTCTATTCCTTGTAAATTAATATTGAAATACATTCATCCGTTATATAGACA ] [+] EMBL BM597738 [ ccGGAAAAAAAACATCCCTGTTCGT GATTCGACGAGCCAGTCATCCCAGCAAAAGCTAGCAAAAGATGTCTCTTGGACCGTTCTTCCGCTCACCGTTCACCGACCTGACCGCGTCGATGGTCAACTTCCAGCAGTACGACAAGTGCGGCGAGCTGGAGATGGCTTCGATCGACTGCCTCGAAGCGTACGGTACCGTGCGCGGTGCGAAGAAGTGTGCCGATCTGCTGGCCGACTTCCAGGAGTGCGCGTTCATGACGAAACAGATCGCTAGATTCCGGGCAATGCGAATGGAAAGACATCGTCAGGGATGGAACGGTGAGCGCAAGGGTGATGGATATTACGCACCACCGCCGCGTGTCGATGCCTACTAGAGAGTGCGTTAGCTGTGAGCACATCCGCAGCCCGGGAGGCACCACCACTAGAGGAATCCGCCTATTCCTTGTAAATTAATATTGAAATACATTCATCCGTTATATAGACCAGCT] [+] EMBL BM642091 [ ccgcggacgCGTGGGTTCGACG AGTCATCCCAGCAAAAGCTAGCAAAAGATGTCTCTTGGACCGTTCTTCCGCTCACCGTTCACCGACCTGACCGCGTCGATGGTCAACTTCCAGCAGTACGACAAGTGCGGCGAGCTGGAGATGGCTTCGATCGACTGCCTCGAAGCGTACGGTACCGTGCGCGGTGCGAAGAAGTGTGCCGATCTGCTGGCCGACTTCCAGGAGTGCGCGTTCATGACGAAACAGATCGCTAGATTCCGGGCAATGCGAATGGAAAGACATCGTCAGGGATGGAACGGTGAGCGCAAGGGTGATGGATATTACGCACCACCGCCGCGTGTCGATGCCTACTAGAGAGTGCGTTAGCTGTGAGCACATCCGCAGCCCGGGAGGCACCACCACTAGAGGAATCCGCCTATTCCTTGTAAATTAATATTGAAATACATTCATCCGTTATATAGAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8205#0 --------------------CCGCCCACGCGTCCGACCTGTTCGTGATTCGACGAGCCAG 40 consensus_8205#1 GAGGACTGTTGGCCTACTGGAAGGAAAAAAAACATCCCTGTTCGTGATTCGACGAGCCAG 60 * * * ************************ consensus_8205#0 TCATCCCAGCAAAAGCTAGCAAAAGATGTCTCTTGGACCGTTCTTCCGCTCACCGTTCAC 100 consensus_8205#1 TCATCCCAGCAAAAGCTAGCAAAAGATGTCTCTTGGACCGTTCTTCCGCTCACCGTTCAC 120 ************************************************************ consensus_8205#0 CGACCTGACCGCGTCGATGGTCAACTTCCAGCAGTACGACAAGTGCGGCGAGCTGGAGAT 160 consensus_8205#1 CGACCTGACCGCGTCGATGGTCAACTTCCAGCAGTACGACAAGTGCGGCGAGCTGGAGAT 180 ************************************************************ consensus_8205#0 GGCTTCGATCGACTGCCTCGAAGCGTACGGTACCGTGCGCGGTGCGAAGAAGTGTGCCGA 220 consensus_8205#1 GGCTTCGATCGACTGCCTCGAAGCGTACGGTACCGTGCGCGGTGCGAAGAAGTGTGCCGA 240 ************************************************************ consensus_8205#0 TCTGCTGGCCGACTTCCAGGAGTGCGCGTTCATGACGAAACAGATCGCTAGATTCCGGGC 280 consensus_8205#1 TCTGCTGGCCGACTTCCAGGAGTGCGCGTTCATGACGAAACAGATCGCTAGATTCCGGGC 300 ************************************************************ consensus_8205#0 AATGCGAATGGAAAGACATCGTCAGGGATGGAACGGTGAGCGCAAGGGCGATGGATATTA 340 consensus_8205#1 AATGCGAATGGAAAGACATCGTCAGGGATGGAACGGTGAGCGCAAGGGTGATGGATATTA 360 ************************************************ *********** consensus_8205#0 CGCACCACCGCCGCGTGTCGATGCCTACTAGAGAGTGCGTTAGCTGTGAGCACATCCGCA 400 consensus_8205#1 CGCACCACCGCCGCGTGTCGATGCCTACTAGAGAGTGCGTTAGCTGTGAGCACATCCGCA 420 ************************************************************ consensus_8205#0 GCCCGGGAGGCACCACCACTAGAGGAATCCGCCTATTCCTTGTAAATTAATATTGAAATA 460 consensus_8205#1 GCCCGGGAGGCACCACCACTAGAGGAATCCGCCTATTCCTTGTAAATTAATATTGAAATA 480 ************************************************************ consensus_8205#0 CATTCATCCGTTATATAGACAAGACCGGGAATTGTTTCCAAAAAAAAAAAAAAAAAGGCC 520 consensus_8205#1 CATTCATCCGTTATATAGACAAGCT----------------------------------- 505 *********************** consensus_8205#0 ACATGTGCCCGAGCTGTGGT 540 consensus_8205#1 -------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||