These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8209#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 640 fasta sequence [ATGGTGAAGGAGCAGGAGGAGATGGTCGAACGGATCGATAGCAACCTGCAGGACGTGGAGCTGAACGTGGAGGCGGCCCACGGGGAAATTCTCAAATACTTCCAATCGGTCACGAAGAACCGTTGGCTGATGATCAAGATCTTTGGCGTGCTGATACTGTTTTTCATCTTTTTCGTTATCTTCCTAGCGTAGTGTGGGTCTGAAGGGGGGGTGATGGTTTTTGGTCGATTATTGCGCTCACGGGAGCACACACACACACCATTGTATAGTTGAATTTTGTTCTATTTTTAGTAACAATTTTTATCCCATCGTCCCCACACGTTGGCTTGA------TGAATCCCGGGGAGCGACTGCAGGCGTCCTTCTGTTTTATTCTGGCATATTATATCCTAGAACCTAGTGGCTTTTTGGCTTAGCGAATACGAATACGAAGTGCTAACGAATCCGGGGCTGGGCAGAAGTAAGTGTGGAGCTGTTACATTTGGGGGGGCGAGCGGACGGACGAAGATTGTGTATTACCGAAATCAATTGTTTGTATATAGGAAGAGGTGAAGTACGGCCGGGCGAAACATGTAACACACGTTGTCCTACGGGAGCAAAACAATATAATATATAAATTAAATCATTTTAAACACAAAAAAAA] [+] EMBL AGA285095 [ATGGTGAAGGAGCAGGAGGAGATGGTCGAACGGATCGATAGCAACCTGCAGGACGTGGAGCTGAACGTGGAGGCGGCCCACGGGGAAATTCTCAAATACTTCCAATCGGTCACGAAGAACCGTTGGCTGATGATCAAGATCTTTGGCGTGCTGATACTGTTTTTCATCTTTTTCGTTATCTTCCTAGCGTAGTGTGGGTCTGAAGGGGGGGTGATGGTTTTTGGTCGATTATTGCGCTCACGGGAGCACACACACACACCATTGTATAGTTGAATTTTGTTCTATTTTTAGTAACAATTTTTATCCCATCGTCCCCACACGTTGGCTTGA TGAATCCCGGGGAGCGACTGCAGGCGTCCTTCTGTTTTATTCTGGCATATTATATCCTAAAACCTAGTGGCTTTTTGGCTTAGCGA ] [+] EMBL BX625770 [ ATAGCAACCTGCANGACGTGGAGCTGAACGTGGANGCGGCCCACGGGGAAATTCTCANATACTTCCAATCNGTCACGAANAACCGTTGGCTGATGATCAANATCTTTGGCGNGCTGATACTGTTTTTCATCTTTTTCGNTATCTTCCTAGCGTAGTGTGGGTCTGAAGGGGGGGTGATGGTTTTTGGTCGATTATTGCGCTCACGGGAGCACACACACACACCATTGTATAGTTGAATTTTGTTCTAT ] [+] EMBL BM627957 [ ccgGTGGAGCTGAACGTGGAGGCGGCCCACGGGGAAATTCTCAAATACTTCCAATCGGTCACGAAGAACCGTTGGCTGATGATCAAGATCTTTGGCGTGCTGATACTGTTTTTCATCTTTTTCGTTATCTTCCTAGCGTAGTGTGGGTCTGAAGGGGGGGTGATGGTTTTTGGTCGATTATTGCGCTCACGGGAGCACACACACACACCATTGTATAGTTGAATTTTGTTCTATTTTTAGTAACAATTTTTATCCCATTGTCCCCACACGTTGGCTTGATGGATGTGAATCCCGGGGAGCGACTGCAGGCGTCCTTCTGTTTTATTCTGGCATATTATATCCTAGAACCTAGTGGCTTTTTGGCTTAGCGAATACGAATACGAAGTGCTAACGAATCCGGGGCTGGGCAGAAGTAAGTGTGGAGCTGTTACATTTGGGGGTGCGAGCGGACGGACGAAGATTGTGTATTACCGAAATCAATTGTTTGTATATAGGAAGTGGTGAGGTACGGCCGGGCGGAACATGTAACACACGTTGTCCTACGGGAGCAAAACAATATAATATATAAATTAAATCATTTTAAACACcagg ] [-] EMBL AGA283804 [ GTGGGTCTGAAGGGGGGGTGATGGTTTTTGGTCGATTATTGCGCTCACGGGAGCACACACACACACCATTGTATAGTTGAATTTTGTTCTATTTTTAGTAACAATTTTTATCCCATCGTCCCCACACGTTGGCTTGA TGAATCCCGGGGAGCGACTGCAGGCGTCCTTCTGTTTTATTCTGGCATATTATATCCTAGAACCTAGTGGCTTTTTGGCTTAGCGAATACGAATACGAAGTGCTAACGAATCCGGGGCTGGGCAGAAGTAAGTGTGGAGCTGTTACATTTGGGGGGGCGAGCGGACGGACGAAGATTGTGTATTACCGAAATCAATTGTTTGTATATAGGAAGAGGTGAAGTACGGCCGGGCGAAACATGTAACACACGTTGTCCTACGGGAGCAAAACAATATAATATATAAATTAAATCATTTTAAAAAAAA ] [+] EMBL AGA283978 [ tttTTTTTAACCCATCGTCCCCACACGTTGGCTTGA TGAATCCCGGGGAGCGACTGCAGGCGTCCTTCT TTTTATTCTGGCATATTATATCCTAGAACCTAGTGGCTTTTTGGCTTAGCGAATACGAATACGAAGTGCTAACGAATCCGGGGCTGGGCACAAGTAAGTGTGGAGCTGTTACATTTGGGGGGGCGAGCGGCCGGACGAAGATTGTGTATTACCGAAATCAATTGTTTGTATATAGGAAGA ] [-] EMBL AGA285274 [ TCCCATCGTCCCCACACGTTGGCTTGA TGAATCCCGGGGAGCGACTGCAGGCGTCCTTCT TTTTATTCTGGCATATTATATCCTAGAACCTAGTGGCTTTTTGGCTTAGCGAATACGAATACGAAGTGCTAACGAATCCGGGGCTGGGCAGAAGTAAGTGTGGAGCTGTTACATTTGGGGGGGCGAGCGGACGGACGAAGATTGTGTATTACCGAAATCAATTGTTTGTA ] [-] EMBL AGA284289 [ gaggCCCATCGTCCCCACACGTTGGCTTGA TGAATCCCGGGGAGCGACTGCAGGCGTCCTTCTGTTTTATTCTGGCATATTATATCCTAGAACCTAGTGGCTTTTTGGCTTAGCGAATACGAATACGAAGTGCTAACGAATCCGGGGCTGGGCAGAAGTAAGTGTGGAGCTGTTACATTTGGGGGGGCGAGCGGACGGACGAAGATTGTGTATTACCGAAATCAATTGTTTGTATATAGGAAGAGGTGAAGTACGGCCGGGCGAAACATGTAACACACGTTGTCCTACGGGAGCAAAACAATATAATATATAAATTAAATCATTTTAAACACAAAAAA ] [+] EMBL AGA285593 [ CCCACACGTTGGCTTGA TGAATCCCGGGGAGCGACTGCAGGCGTCCTTCTGTTTTATTCTGGCATATTATATCCTAGAACCTAGTGGCTTTTTGGCTTAGCGAATACGAATACGAAGTGCTAACGAATCCGGGGCTGGGCAGAAGTAAGTGTGGAGCTGTTACATTTGGGGGGGCGAGCGGACGGACGAAGATTGTGTATTACCGAAATCAATTGTTTGTATATAGGAAGAGGTGAAGTACGGCCGGGCGAAACATGTAACACACGTTGTCCTACGGGAGCAAAACAATATAATATATAAATTAAATCATTTTAAACACAAAAAAAA] consensusID : consensus_8209#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 128 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGGCCCGTGGAAAGGCATGAGGTGAGGTACGGCCGGGCGGAACATGTAACACACGTTGTCCTACGGGAGCAAAACAATATAATATATAAATTAAATCATTTT] [+] EMBL BM586166 [CCGCCCACGCGTCCGCCCACGCGTCCGGGCCCGTGGAAAGGCATGAGGTGAGGTACGGCCGGGCGGAACATGTAACACACGTTGTCCTACGGGAGCAAAACAATATAATATATAAATTAAATCATTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8209#0 ATGGTGAAGGAGCAGGAGGAGATGGTCGAACGGATCGATAGCAACCTGCAGGACGTGGAG 60 consensus_8209#1 ------------------------------------------------------------ consensus_8209#0 CTGAACGTGGAGGCGGCCCACGGGGAAATTCTCAAATACTTCCAATCGGTCACGAAGAAC 120 consensus_8209#1 ------------------------------------------------------------ consensus_8209#0 CGTTGGCTGATGATCAAGATCTTTGGCGTGCTGATACTGTTTTTCATCTTTTTCGTTATC 180 consensus_8209#1 ------------------------------------------------------------ consensus_8209#0 TTCCTAGCGTAGTGTGGGTCTGAAGGGGGGGTGATGGTTTTTGGTCGATTATTGCGCTCA 240 consensus_8209#1 ------------------------------------------------------------ consensus_8209#0 CGGGAGCACACACACACACCATTGTATAGTTGAATTTTGTTCTATTTTTAGTAACAATTT 300 consensus_8209#1 ------------------------------------------------------------ consensus_8209#0 TTATCCCATCGTCCCCACACGTTGGCTTGATGAATCCCGGGGAGCGACTGCAGGCGTCCT 360 consensus_8209#1 ------------------------------------------------------------ consensus_8209#0 TCTGTTTTATTCTGGCATATTATATCCTAGAACCTAGTGGCTTTTTGGCTTAGCGAATAC 420 consensus_8209#1 ------------------------------------------------------------ consensus_8209#0 GAATACGAAGTGCTAACGAATCCGGGGCTGGGCAGAAGTAAGTGTGGAGCTGTTACATTT 480 consensus_8209#1 ------------------------------------------------------------ consensus_8209#0 GGGGGGGCGAGCGGACGGACGAAGATTGTGTATTACCGAAATCAATTGTTTGTATATAGG 540 consensus_8209#1 ---------------CCGCCCACG--CGTCCGCCCACGCGTCCGG--GCCCGTGGAAAGG 41 * * * * * ** ** * * ** * *** consensus_8209#0 AA-GAGGTGAAGTACGGCCGGGCGAAACATGTAACACACGTTGTCCTACGGGAGCAAAAC 599 consensus_8209#1 CATGAGGTGAGGTACGGCCGGGCGGAACATGTAACACACGTTGTCCTACGGGAGCAAAAC 101 * ******* ************* *********************************** consensus_8209#0 AATATAATATATAAATTAAATCATTTTAAACACAAAAAAAA 640 consensus_8209#1 AATATAATATATAAATTAAATCATTTT-------------- 128 *************************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||