These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8210#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1446 fasta sequence [AACAAATTATCACTAATCAAACTTTGATTGAACTTCAGGACAAAAAAAGCAAACAGTATTCCGAAAGCTTACCATGAAATTTGGCGAAACGTGAAGGGCCCAACAGGGGAGACAGCATAGAAACAACATCAACAAGGGCCTATTGAAGATAGCAGTTTTTAAGTGGCTTTGATTTGTGAAACACAGGAAAGAGGGAGAGAAATATGAAGGGGGAATAAGAGCAGAGCAGAGGGGATATAAAACAAACATTAATTCATTCCCAATTATAGCAGAGAAAGAGAGG------GAGAGAGAGAGAACTAATGAACTGAAGCAGAACAATAACATCGAAATGATACATCTCATAATTCCATCACAAAATGGGACTGCTACCACAAACTACTTCTGCTTGTTAACAGCGAGGAGAAAAAATAATGTACAAATCGGGTGCATGATGTGTG--TGTGTGTGAGTGCGGGATAAGGCACAAACAAATCAGCGTGTCGTGGTGTGC--GTGTGTGTGTG--TATGTGTGTGCTTGCGTGTGTGTCCTCGGAGTGAGCGATTTTCTTACTCTAAATCTACTCCTATTGGTGTTAAGTAGCAAATGGAATCGGCGAGTTTTTACAGAAAATACCATCCAATCGAGAATAATATTGTCGTATTATAAATCAGGAGGAGAACAAGAAGAACCCTTTGTCTTTGCCCTATGGCGATGGAGCGGGGAAGACTACTAATGCGTTTGCGCGTGCGCGTGTGTGCGCAAATGCATCTGAAATGGCGCACACATCTTAACGGTGTTACGCAAAGTTAGGAAAAAATCGTTTTTAATGTTTTATCACCCACAACAGAGACGCGCACGCCAACCAAAGGAGTGCAACAATCAATCAATATCTAACGAGTGAGTAAAACGGAACCAAGAGCAGGGAAAAGTGGTAAAACAAATAGCAATGGTGTGGCGTTTAAAACGTGACGGAGGAGAGAAGAAGCACAATAGAAGGGCGGTAAGAGAAAAGCAACTCAAATTGTGTTTTTGTGGAAGGGGGAAAGTTTTAACACACACGTTGTTTTACTACAGCGAACAAAATCAACCACAACAATGAAAATCAATCAGTACATGAAAATCAAGCAACAGAAAAATGAACACAAGAATCAAGCACCAACAGCAAAACAAAACATGTGAAAACGATCAAACATGTCTTCCCCTAATCTTTGGTGTGCAGGGCGAACGACGATAAATGTGAGAACGACACGGTACCTGAAATTTGTAAACGCTAACGTAGGAATAGGTTTAGACACGATTTTAACTCACAAAGAGAGATAGTACGAGAGAGAAAAAAATGGAACAACAACAACAACCACAACCAGAAGAAAAACAACCCGACATCAAATTAAAAAAAATGGGCAAAAAACAAAACAAAAAAAAAACATACAAAAGAATAACAGCAATTGCCTGAAAAAGAGAAAAGGAAGT] [+] EMBL BX615275 [AACAAATTATCACTAATCAAACTTTGATTGAACTTCAGGACAAAAAAAGCAAACAGTATTCCGAAAGCTTACCATGAAATTTGGCGAAACGTGAAGGGCCCAACAGGGGAGACAGCATAGAAACAACATCAACAAGGGCCTATTGAAGATAGCAGTTTTTAAGTGGCTTTGATTTGTGAAACACAGGAAAGAGGGAGAGAAATATGAAGGGGGAATAAGAGCAGAGCAGAGGGGATATAAAACAAACATTAATTCATTCCCAATTATAGCAGAGAAAGAGAGGGAGAGAGAGAGAGAGAGAACTAATGAACTGAAGCAGAACAATAACATCGAAATGATACATCTCATAATTCCATCACAAAATGGGACTGCTACCACAAACTACTTCTGCTTGTTAACAGCGAGGAGAAAAAATAATGTACAAATCAGGTGCATGATGTGTG TGTGTGTGAGTGCGGGATAAGGCACAAACAAATCAGCGTGTCTTGGTGTGCGTGTGTGTGTGTG TATGTGTGTGCTTGCGTGTGTGTCCTCGGAGTGAGCGATTTTCTTACTCTAAATCT ] [+] EMBL BM586122 [ ccgCAGGAGAGAGGGAGAGAAATATGAAGTGGGAATAAGATCAGAGCAGGGTGGATATAAAACAAACATTAATTCATTCCCAAGTATAGCAGAGAAAGAGAGG GAGAGAGAGAGAACTAATGAACTGAAGCAGAACAATAACATCGAAATGATACATCTCATAATTCCATCACAAAATGGGACTGCTACCACAAACTACTTCTGCTTGTTAACAGCGAGGAGAAAAAATAATGTACAAATCGGGTGCATGATGTGTGTTTGTGTGTGAGTGCGGGATAAGGCACAAACAAATCAGCGTGTCGTGGTGTGC GTGCGTGTGTG TATGTGTGTGCTTGCGTGTGTGTCCTCGGAGTGAGCGATTTTCTTACTCTAAATCTACTCCTATTGGTGTTAAGTAGCAAATGGAATCGGCGAGTTTTTACAGAAAATACCATCCAATCGAGAATAATATTGTCGTATTATAAATCAGGAGGAGAACAAGAAGAACCCTTTGTCTTTGCCCTATGGCGATGGAGCGGGGAAGACTACTAATGCGTTTGCGCGTGCGCGTGTGTGCGCAAATGCATCTGAAATGGCGC ] [+] EMBL BM605054 [ ccgGATACATCTCATAATTCCATCACAAAATGGGACTGCTACCACAAACTACTTCTGCTTGTTAACAGCGAGGAGAAAAAATAATGTACAAATCGGGTGCATGATGTGTGTTTGTGTGTGAGTGCGGGATAAGGCACAAACAAATCAGCGTGTCGTGGTGTGC GTGCGTGTGTG TATGTGTGTGCTTGCGTGTGTGTCCTCGGAGTGAGCGATTTTCTTACTCTAAATCTACTCCTATTGGTGTTAAGTAGCAAATGGAATCGGCGAGTTTTTACAGAAAATACCATCCAATCGAGAATAATATTGTCGTATTATAAATCAGGAGGAGAACAAGAAGAACCCTTTGTCTTTGCCCTATGGCGATGGAGCGGGGAAGACTACTAATGCGTTTGCGCGTGCGCGTGTGTGCGCAAATGCATCTGAAATGGCGCACACATCTTAACGGTGTTACGCAAAGTTAGGAAAAAATCGTTTTTAATGTTTTATCACCCACAACAGAGACGCGCACGCC ] [+] EMBL CNS08O5Z [ TGTGTGTGAGTGCGGGATAAGGCACAAACAAATCAGCGTGTCGTGGTGTGC GTGTGTGTGTGTTTATGTGTGTGCTTGCGTGTGTGTCCTCGGAGTGAGCGATTTTCTTACTCTAAATCTACTCCTATTGGTGTTAAGTAGCAAATGGAATCGGCGAGTTTTTACAGAAAATACCATCCAATCGAGAATAATATTGTCGTATTATAAATCAGGAGGAAAACAAGAAGAACCCTTTGTCTTTGCCCTTTGGCGATGGAGCGGGGAAGACTACTAATGCGTTTGCGCGTGCGCGTGTGTGCGCAAATGCATCTGAAATGGCGCACACATCTTAACGGTGTTACGCAAAGTTAGGAAAAAATCGTTTTTAATGTTTTATCACCCACAACAGAGACGCGCACGCCAACCAAAGGAGTGCAACAATCAATCAATATCTAACGAGTGAGTAAAACGGAACCAAGAGCAGGGAAAAGTGGTAAAACAAATAGCAATGGTGTGGCGTTTAAAACGTGACGGAGGAGAGAAGAAGCACAATAGAAGGGCGGTAAGAGAAAAGCAACTCAAATTGTGTTTTTGTGGAAGGGGGAAAGTTTTAACACACACGTTGTTTTACTACAGCGAACAAAATCAACCACAACAATGAAAATCAATCAGTACATGAAAATCAAGCAACAGAAAAATGAACACAAGAATCAAGCACCAACAGCAAAACAAAACATGTGAAAACG ] [-] EMBL CNS08O60 [ GGAGTGCAACAATCAATCAATATCTAACGAGTGAGTAAAACGGAACCAAGAGCAGGGAAAAGTGGTAAAACAAATAGCAATGGTGTGGCGTTTAAAACGTGACGGAGGAGAGAAGAAGCACAATAGAAGGGCGGTAAGAGAAAAGCAACTCAAATTGTGTTTTTGTGGAAGGGGGAAAGTTTTAAAACACACGTTGTTTTACTACAGCGGACAAAATCAACCACAACAATGAAAATCAATCAGTACATGAAAATCAAGCAACAGAAAAATGAACACAAGAATCAAGCACCAACAGCAAAACAAAACATGTGAAAACGATCAAACATGTCTTCCCCTAATCTTTGGTGTGCAGGGCGAACGACGATAAATGTGAGAACGACACGGTACCTGAAATTTGTAAACGCTAACGTAGGAATAGGTTTAGACACGATTTTAACTCACAAAGAGAGATAGTACGAGAGAGAAAAAAATGGAACAAC ] [+] EMBL BX615574 [ GAGTAAAACGGAACCAAGAGCAGGGAAAAGTGGTAAAACAAATAGCAATGGTGTGGCGTTTAAAACGTGACGGAGGAGAGAAGAAGCACAATAGAAGGGCGGTAAGAGAA ] [+] EMBL BM641527 [ ccgAAATAGCAATGGTGTGGCGTTTAAAACGTGACGGAGGAGAGAAGAAGCACAATAGAAGGGCGGTAAGAGAAAAGCAACTCAAATTGTGTTTTTGTGGAAGGGGGAAAGTTTTAACACACACGTTGTTTTACTACAGCGAACAAAATCAACCACAACAATGAAAATCAATCAGTACATGAAAATCAAGCAACAGAAAAATGAACACAAGAATCAAGCACCAACAGCAAAACAAAACATGTGAAAACGATCAAACATGTCTTCCCCTAATCTTTGGTGTGCAGGGCGAACGACGATAAATGTGAGAACGACACGGTACCTGAAATTTGTAAACGTTAACGTAGGAATAGGTTTAGACACGATTTTAACTCACAAAGAGAGATAGTACGAGAGAGAAAAAAATGGAACAACAACAACAACCACAACCAGAAGAAAAACAACCCGACATCAAATTAAAAAAAATGGGCAAAAAACAAAACAAAAAAAAAACATACAAAAGAATAACAGCAATTGCCTGAAAAAGAGAAAAGGAAGT] consensusID : consensus_8210#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 569 fasta sequence [AGAGAGAGAGAGAGAGAACTAATGAACTGAAGCAGAACAATAACATCGAAATGATACATCTCATAATTCCATCACAAAATGGGACTGCTACCACAAACTACTTCTGCTTGTTAACAGCGA-GGAGAAAAAATAATGTACAAATCAGGTGCATGATGTGTGTGTGTGTGAGTGCGGGATAAGGCACAAACAAATCAGCGTGTCGTGGTGTGCGTGTGTGTGTGTGTATGTGTGTGCTTGCGTGTGTGTCCTCGGAGTGAGCGATTTTCTTACTCTAAATCTACTCCTATTGGTGTTAAGTAGCAAATGGAATCGGCGAGTTTTTACAGAAAATACCATCCAATCGAGAATAATATTGTCGTATTATAAATCAGGAGGAAAACAAGAAGAACCCTAATCTTTGGTGTGCAGGGCGAACGACGATAAATGTGAGAACGACACGGTACCTGAAATTTGTAAACGTTAACGTAGGAATAGGTTTAGACACGATTTTAACTCACAAAGAGAGATAGTACGAGAGAGAAAAAAATGGAACAACAACAACAACCACAACCAGAAGAAAAACCACCCGA] [+] EMBL BX620371 [AGAGAGAGAGAGAGAGAACTAATGAACTGAAGCAGAACAATAACATCGAAATGATACATCTCATAATTCCATCACAAAATGGGACTGCTACCACAAACTACTTCTGCTTGTTAACAGCGA GGAGAAAAAATAATGTACAAATCAGGTGCATGATGTGTGTGTGTGTGAGTGCGGGATAAGGCACAAACAAATCAGCGTGTCGTGGTGTGCGTGTGTGTGTGTGTATGTGTGTGCTTGCGTGTGTGTCCTCGGAGTGAGCGATTTTCTTACTCTAAATCTACTCCTATTGGTGTTAAGTAGCAAATGGAATCGGCGAGTTTTTACAGAAAATACCATCCAATCGAGAATAATATTGTCGTATTATAAATCAGGAGGAAAACAAGAAGAACCCTAATCTTTGGTGTGCAGGGCGAACGACGATAAATGTGAGAACGACACGGTACCTGAAATTTGTAAACGTTAACGTAGGAATAGGTTTAGACACGATTTTAACTCACAAAGAGAGATAGTACGAGAGAGAAAAAAATGGAACAACAACAACAACCACAACCAGAAGAAAAACCACCCGA] [+] EMBL BX625276 [ ACCACAAACTACTTCTGCTTGTTAACAGCGAGGGAGAAAAAATAATGTACAAATCAGGTGCATGATGTGTGTGTGTGTGAGTGCGGGATAAGGCACAAACAAATCAGCGTGTCGTGGTGTGCGTGTGTGTGTGTGTATGTGTGTGCTTGCGTGTGTGTCCTCGGAGTGAGCNATTTTCTTAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8210#0 AACAAATTATCACTAATCAAACTTTGATTGAACTTCAGGACAAAAAAAGCAAACAGTATT 60 consensus_8210#1 ------------------------------------------------------------ consensus_8210#0 CCGAAAGCTTACCATGAAATTTGGCGAAACGTGAAGGGCCCAACAGGGGAGACAGCATAG 120 consensus_8210#1 ------------------------------------------------------------ consensus_8210#0 AAACAACATCAACAAGGGCCTATTGAAGATAGCAGTTTTTAAGTGGCTTTGATTTGTGAA 180 consensus_8210#1 ------------------------------------------------------------ consensus_8210#0 ACACAGGAAAGAGGGAGAGAAATATGAAGGGGGAATAAGAGCAGAGCAGAGGGGATATAA 240 consensus_8210#1 ------------------------------------------------------------ consensus_8210#0 AACAAACATTAATTCATTCCCAATTATAGCAGAGAAAGAGAGGGAGAGAGAGAGAACTAA 300 consensus_8210#1 --------------------------------------AGAGAGAGAGAGAGAGAACTAA 22 **** ***************** consensus_8210#0 TGAACTGAAGCAGAACAATAACATCGAAATGATACATCTCATAATTCCATCACAAAATGG 360 consensus_8210#1 TGAACTGAAGCAGAACAATAACATCGAAATGATACATCTCATAATTCCATCACAAAATGG 82 ************************************************************ consensus_8210#0 GACTGCTACCACAAACTACTTCTGCTTGTTAACAGCGAGGAGAAAAAATAATGTACAAAT 420 consensus_8210#1 GACTGCTACCACAAACTACTTCTGCTTGTTAACAGCGAGGAGAAAAAATAATGTACAAAT 142 ************************************************************ consensus_8210#0 CGGGTGCATGATGTGTGTGTGTGTGAGTGCGGGATAAGGCACAAACAAATCAGCGTGTCG 480 consensus_8210#1 CAGGTGCATGATGTGTGTGTGTGTGAGTGCGGGATAAGGCACAAACAAATCAGCGTGTCG 202 * ********************************************************** consensus_8210#0 TGGTGTGCGTGTGTGTGTGT--ATGTGTGTGCTTGCGTGTGTGTCCTCGGAGTGAGCGAT 538 consensus_8210#1 TGGTGTGCGTGTGTGTGTGTGTATGTGTGTGCTTGCGTGTGTGTCCTCGGAGTGAGCGAT 262 ******************** ************************************** consensus_8210#0 TTTCTTACTCTAAATCTACTCCTATTGGTGTTAAGTAGCAAATGGAATCGGCGAGTTTTT 598 consensus_8210#1 TTTCTTACTCTAAATCTACTCCTATTGGTGTTAAGTAGCAAATGGAATCGGCGAGTTTTT 322 ************************************************************ consensus_8210#0 ACAGAAAATACCATCCAATCGAGAATAATATTGTCGTATTATAAATCAGGAGGAGAACAA 658 consensus_8210#1 ACAGAAAATACCATCCAATCGAGAATAATATTGTCGTATTATAAATCAGGAGGAAAACAA 382 ****************************************************** ***** consensus_8210#0 GAAGAACCCTTTGTCTTTGCCCTATGGCGATGGAGCGGGGAAGACTACTAATGCGTTTGC 718 consensus_8210#1 GAAGAACCCTA-ATCTTTGGTGTGCAGGGCGAACGACGATAAATGTGAGAACGACACGGT 441 ********** ****** * * * * * ** * ** * * consensus_8210#0 GCGTGCG-CGTGTGTGCGCAAATGCATCTGAAATGGCGCACAC-ATCTTAACGGTGTTAC 776 consensus_8210#1 ACCTGAAATTTGTAAACGTTAACGTAGGAATAGGTTTAGACACGATTTTAAC--TCACAA 499 * ** *** ** ** * * * **** ** ***** * * consensus_8210#0 GCAAAGTTAGGAAAAAATCGTTTTTAATGTTTTATCACCCACAACAGAGACGCGCACGCC 836 consensus_8210#1 AGAGAGATAGTACGAGAGAGAAAAAAATGGAACAACAACAACAACCACAACCAGAAGAAA 559 * ** *** * * * * **** * ** * ***** ** * * consensus_8210#0 AACCAAAGGAGTGCAACAATCAATCAATATCTAACGAGTGAGTAAAACGGAACCAAGAGC 896 consensus_8210#1 AACCACCCGA-------------------------------------------------- 569 ***** ** consensus_8210#0 AGGGAAAAGTGGTAAAACAAATAGCAATGGTGTGGCGTTTAAAACGTGACGGAGGAGAGA 956 consensus_8210#1 ------------------------------------------------------------ consensus_8210#0 AGAAGCACAATAGAAGGGCGGTAAGAGAAAAGCAACTCAAATTGTGTTTTTGTGGAAGGG 1016 consensus_8210#1 ------------------------------------------------------------ consensus_8210#0 GGAAAGTTTTAACACACACGTTGTTTTACTACAGCGAACAAAATCAACCACAACAATGAA 1076 consensus_8210#1 ------------------------------------------------------------ consensus_8210#0 AATCAATCAGTACATGAAAATCAAGCAACAGAAAAATGAACACAAGAATCAAGCACCAAC 1136 consensus_8210#1 ------------------------------------------------------------ consensus_8210#0 AGCAAAACAAAACATGTGAAAACGATCAAACATGTCTTCCCCTAATCTTTGGTGTGCAGG 1196 consensus_8210#1 ------------------------------------------------------------ consensus_8210#0 GCGAACGACGATAAATGTGAGAACGACACGGTACCTGAAATTTGTAAACGCTAACGTAGG 1256 consensus_8210#1 ------------------------------------------------------------ consensus_8210#0 AATAGGTTTAGACACGATTTTAACTCACAAAGAGAGATAGTACGAGAGAGAAAAAAATGG 1316 consensus_8210#1 ------------------------------------------------------------ consensus_8210#0 AACAACAACAACAACCACAACCAGAAGAAAAACAACCCGACATCAAATTAAAAAAAATGG 1376 consensus_8210#1 ------------------------------------------------------------ consensus_8210#0 GCAAAAAACAAAACAAAAAAAAAACATACAAAAGAATAACAGCAATTGCCTGAAAAAGAG 1436 consensus_8210#1 ------------------------------------------------------------ consensus_8210#0 AAAAGGAAGT 1446 consensus_8210#1 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||