These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8221#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 2068 fasta sequence [GAATTTAGCGAAAGCAAACGGAACCGATCAGCAAAATCGGTTGAATGTTTACGCATTTAGTAAGAGATACACAGATACAGAGATAAATACACATTTTAACATGTTTGCGGGGATGAATACGTAGCTCGTAAGCAGTGTACATTTCAGAACCGTACGTAAGCCGATAGAGATCCTGGGTTTGTCCAGGCAATGCTCCTGGAGGAACTGATTTTAGTTTTTACCTTATTGTGTATCCCCAACCGTGTATTGGTGGCGTTTATTGTTAAACGAAATAAGCGCACAGATACACATCCTTGCTTTTCTTGCATACTTAAAGGACGTTCGTGTGAAGCAACTGTTTAACAAATTGTTTCGAAACGCCGGAATGCAGAAAGCAAGCGAGCGTTAAGAAAAATGGCGAATGGAAGGCATACAAGAATAGCTAGCAAAAGGTTCAACTTTTTTTTAATACATAAGTAAATCGAAACAAATTTAAAGTAAAACACACAAGTAATGATAAAATGGAATGCAAAAAAAATGAAAAAGAAAGAGACGAAACATAAAAGAAAAGCAAATTAAGAATACGTAAAAGTGAGCAGGTGAAAGTAGTTGAAGAGGACGAGAAAAAAGGGTAACGAAATGCAATATTATGAGCGAACGGGAAAACCCATTGGAAGGAAACAATAATTTTATGCAAACAACAAAACAGCAAACAACAAAATGTGAAAAGCTGATCAAAACAGCACAAAAACAAATGCCCCCCTCATTGTAGTATGTAAAGTAGAAAAGCAAGCACATTTTGTTAACTTATTGTCCGTAAGTCTTCTATTGATTAGTTCTTAGGGTGAACAAAGCAGAATCTTTTGCACAACAACAACGACGACAACAAGTCCCTTCCAATAAGACAGCCCCTTCCCGGCTTTGCAGGACTCGCGACGAAAGCAGGGAGCAAGGACGACAGGTTGTTGTTTTCGTTTTAATCGGTTAGGTTTCGTTTCGTTTCCGGTTGAATTTTTGTTGGGTAGGGGGTACTTTAACCGTTTTGGGGCGCGATCGATCTGCTGCATGTGACGGATCGTGTACATAAGAACGTTGGCGGTGAGTTTTGGTTTGTGTTTCAAATCAGCGCATATACACACAGCGATAAGGTGATCGTGGTGTTTGTTTCACAAAATTAACCAGATCGAGTATTTAGAAACGTCTCAAGCCAACCAGCAAATCATAAAGATTCCTTTATGGAACACAAAAAGGGAAAATAACACAAAAAACACGAAAATTGTGCAGTAACATTGTTTACAGTAATTTAAACTTGCCCAAGGTATAGTCAAGAGTCGGAAGCAAATGAAGGATAAAACTAATGTATTATTAAGTACGCTTAACCAGCGTGTTTCGAGGGTAGCGTAGTAATTTATCGAGATTCATTCGGCTTCAGGAAGGGAAAATAAATGAAACAAAAGCCGCTGGAATGTAGGAATGCAAAACACTTTTCGTTTCGTAATTCAGTCGAGTCGGTTAGGGTTAGTTGCTGTTCAGCTGAAGAAGTTGAAACTCCGATTCCACGGTACAACACACAACACGCACATCCACATCAACAGCACACACACATGCACAGACAACTCAAGCGACAGCAGCAAACAAAAAAAGAAACAAAGCTACAGCAAACAAGCAAACATAAATAAAAGCGAAACAATAAACAAATGTCTAGGGAAGAGAACGAGATGAGGGAACACGGGAAGGCAAACAAGGTAATGCAAATTGTAAATACTTATTATCATATCATTATATTATATTGTATTGATTAATATTATTAAAACAAAACACACAAAACACACAAGTAATGGTAATACATTATTGCATTGAAGATAAAAGGAAAAAACAAACGCGGTAGACAAACGGGTGGATAACGCCCGCAAATGCGTGCAAAAACGCGGAAAAAGCGCATAAATACACACAAGTTGTAGCGAAAGACGAAGAAGAAGAAGAAGCAGACCGACGTACAGCGTACAGTAATGGAAGTATAAATTATATTGTCTTCTTTATGAATTTCTATCCAATAAAAGGAAAAATAAAATATTATCTGTAATGAATA] [-] EMBL AGA283312 [GAATTTAGCGAAAGCAAACGGAACCGATCAGCAAAATCGGTTGAATGTTTACGCATTTAGTAAGAGATACACAGATACAGAGATAAATACACATTTTAACATGTTTGCGGGGATGAATACGTAGCTCGTAAGCAGTGTACATTTCAGAACCGTACGTAAGCCGATAGAGATCCTGGGTTTGTCCAGGCAATGCTCCTGGAGGAACTGATTTTAGTTTTTACCTTATTGTGTATCCCCAACCGTGTATTGGTGGCGTTTATTGTTAAACGAAATAAGCGCACAGATACACATCCTTGCTTTTCTTGCATACTTAAAGGACGTTCGTGTGAAGCAACTGTTTAACAAATTGTTTCGAAACGCCGGAATGCAGAAAGCAAGCGAGCGTTAAGAAAAATGGCGAATGGAAGGCATACAAGAATAGCTAGCAAAAGGTTCAACTTTTTTTTAATACATAAGTAAATCGAAACAAATTTAAAGTAAAACACACAAGTAATGATAAAATGGAATGCAAAAAAAA ] [+] EMBL BX610338 [ AAGGACGTTCGTGTGAAGCAACTGTTTAACAAATTGTTTCTTAACGCCGGAATGCAGAAAGCAAGCGAGCGTTAAGAAAAATGGCGAATGGAAGGCATACAAGAATAGCTAGCAAAAGGTTCAACTTTTTTTTAATACATAAGTAAATCGAAACAAATTTAAAGTAAAACACACAAGTAATGATAAAATGGAATGCAAAAAAAATGAAAAAGAAAGAGACGAAACATAAAAGAAAAGCAAATTAAGAATACGTAAAAGTGAGCAGGTGAAAGTAGTTGAAGAGGACGAGAAAAAAGGGTAACGAAATGCAATATTATGAGCGAACGGGAAAACCCATTGGAAGGAAACAATAATTTTATGCAAACAACAAAACAGCAAACAACAAAATGTGAAAAGCTGATCAAAACAGCACAAAAACAAATGCCCCCCTCATTGTAGTATGTAAAGTAGAAAAGCAAGCACATTTTGTTAACTTATTGTCCGTAAGTCTTCTATTGATTAGTTCTTAGGGTGAACAAAGCAGAATCTTTTGCACAACAACAACGACGACAACAAGTCCCTTCCAATAAGACAGCCCCTTCCCGGCTTTGCAGGACTCGCGACGAAAGCAGGGAGCAAGGACGACAGGTTGTTGTTTTCGTTTTAATCGGTTAGGTTTCGTTTCGTTTCCGGTTGAATTTTTGTTGGGTAGGGGGTACTTTAACCGTTTTGGGGC ] [+] EMBL BX625734 [ GTCCCTTCCAATAAGACAGCCCCTTCCCGGCTTTGCAGGACTCGCGACGAAAGCAGGGAGCAAGGACGACAGGTTGTTGTTTTCGTTTTAATCGGTTAGGTTTCGTTTCGTTTCCGGTTGAATTTTTGTTGGGTAGGGGGTACTTTAACCGTTTTGGGGCGCGATCGATCTGCTGCATGTGACGGATCGTGTACATAAGAACGTTGGCGGTGAGTTTTGGTTTGTGTTTCAAATCAGCGCATATACACACAGCGATAAGGTGATCGTGGTGTTTGTTTCACAAAATTAACCAGATCGAGTATTTAGAAACGTCTCAAGCCAACCAGCAAATCATAAAGATTCCTTTATGGAACACAAAAAGGGAAAATAACACAAAAAACACGAAAATTGTGCAGTAACATTGTTTACAGTAATTTAAACTTGCCCAAGGTATAGTCAAGAGTCGGAAGCAAATGAAGGATAAAACTAATGTATTATTAAGTACGCTTAACCAGCGTGTTTCGAGGGTAGCGTAGTAATTTATCGAGATTCATTCGGCTTCAGGAAGGGAAAATAAATGAAACAAAAGCCGCTGGAATGTAGGAATGCAAAACACTTTTCGTTTCGTAATTCAGTCGAGTCGGTTAGGGTTAGTTGCTGTTCAGCTGAAGAAGTTGAAACTCCGATTCCACGGTACAACACACAACACGCACATCCACATCAACAGCACACACACATGCACAGACAACTCAAGCGAC ] [+] EMBL BX615022 [ CCAACCAGCAAATCATAAAGATTCCTTTATGGAACACAAAAAGGGAAAATAACACAAAAAACACGAAAATTGTGCAGTAACATTGTTTACAGTAATTTAAACTTGCCCAAGGTATAGTCAAGAGTCGGAAGCAAATGAAGGATAAAACTAATGTATTATTAAGTACGCTTAACCAGCGTGTTTCGAGGGTAGCGTAGTAATTTATCGAGATTCATTCGGCTTCAGGAAGGGAAAATAAATGAAACAAAAGCCGCTGGAATGTAGGAATGCAAAACACTTTTCGTTTCGTAATTCAGTCGAGTCGGTTAGGGTTAGTTGCTGTTCAGCTGAAGAAGTTGAAACTCCGATTCCACGGTACAACACACAACACGCACATCCACATCAACAGCACACACACATGCACAGACAACTCAAGCGACAGCAGCAAACAAAAAAAGAAACAAAGCTACAGCAAACAAGCAAACATAAATAAAAGCGAAACAATAAACAAATGTCTAGGGAAGAGAACGAGATGAGGGAACACGGGAAGGCAAACAAGGTAATGCAAATTGTAAATACTTATTATCATATCATTATATTATATTGTATTGATTAATATTATTAAAACAAAACACACAAAACACACAAGTA ] [+] EMBL BX611702 [ AGGTATAGTCAAGAGTCGGAAGCAAATGAAGGATAAAACTAATGTATTATTAAGTACGCTTAACCAGCGTGTTTCGAGGGTAGCGTAGTAATTTATCGAGATTCATTCGGCTTCAGGAAGGGAAAATAAATGAAACAAAAGCCGCTGGAATGTAGGAATGCAAAACACTTTTCGTTTCGTAATTCAGTCGAGTCGGTTAGGGTTAGTTGCTGTTCAGCTGAAGAAGTTGAAACTCCGATTCCACGGTACAACACACAACACGCACATCCACATCAACAGCACACACACATGCACAGACAACTCAAGCGACAGCA ] [+] EMBL BX611968 [ TTAAGTACGCTTAACCAGCGTGTTTCGAGGGTAGCGTAGTAATTTATCGAGATTCATTCGGCTTCAGGAAGGGAAAATAAATGAAACAAAAGCCGCTGGAATGTAGGAATGCAAAACACTTTTCGTTTCGTAATTCAGTCGAGTCGGTTAGGGTTAGTTGCTGTTCAGCTGAAGAAGTTGAAACTCCGATTCCACGGTACAACACACAACACGCACATCCACATCAACAGCACACACACATGCACAGACAACTCAAGCGACAGCAGCAAACAAAAAAAGAAACAAAGCTACAGCAAACAAGCAAACATAAATAAAAGCGAAACAATAAACAAATGTCTAGGGAAGAGAACGAGATGAGGGAACACGGGAAGGCAAACAAGGTAATGCAAATTGTAAATACTTATTATCATATCATTATATTATATTGTATTGATTAATATTATTAAAACAAAACACACAAAACACACAAGTAATGGTAATACATTATTGCATTGAAGATAAAAGGAAAAAACAAACGCGGTAGACAAACGGGTGGATAACGCCCGCAAATGCGTGCAAAAACGCGGAAAAAGCGCATAAATACACACAAGTTGTAGCGAAAGACGAAGAAGAAGAAGAAGCAGACCGACGTACAGCGTACAGTAATGGAAGTATAAATTATATTGTCTTCTTTAT ] [+] EMBL BX615774 [ AAAATAAATGAAACAAAAGCCGCTGGAATGTAGGAATGCAAAACACTTTTCGTTTCGTAATTCAGTCGAGTCGGTTAGGGTTAGTTGCTGTTCAGCTGAAGAAGTTGAAACTCCGATTCCACGGTACAACACACAACACGCACATCCACATCAACAGCACACACACATGCACAGACAACTCAAGCGACAGCAGCAAACAAAAAAAGAAACAAAGCTACAGCAAACAAGCAAACATAAATAAAAGCGAAACAATAAACAAATGTCTAGGGAAGAGAACGAGATGAGGGAACACGGGAAGGCAAACAAGGTAATGCAAATTGTAAATACTTATTATCATATCATTATATTATATTGTATTGATTAATATTATTAAAACAAAACACACAAAACACACAAGTAATGGTAATACATTATTGCATTGAAGATAAAAGGAAAAAACAAACGCGGTAGACAAACGGGTGGATAACGCCCGCAAATGCGTGC ] [-] EMBL BX611701 [ AACATAAATAAAAGCGAACCAATAAACAAATGTCTAGGGAAGAGAACGAGATGAGGGAACACGGGAAGGCAAACAAGGTAATGCAAATTGTAAATACTTATTATCATATCATTATATTATATTGTATTGATTAATATTATTAAAACAAACCACCCAAAACACCCAAGTAATGGTAATACATTATTGCATTGAAGATAAAAGGAAAAAACAAACGCGGTAGACAAACGGGTGGATAACGCCCGCAAATGCGTGCAAAAACGCGGAAAAAGCGCATAAATACACACAAGTTGTAGCGAAAGACGAAGAAGAAGAAGAAGCAGCCCGACGTACAGCGTACAGTAATGGAAGTATAAATTATATTGTCTTCTTTATGAATTTCTATCCAATAAAAGGAAAAATAAAATATTATCTGTAATGAATA] consensusID : consensus_8221#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence [GCAGATTCCNGCACGAGGCGCACATGCTGTTTTTTTTNCTTTTTTTTTCAATGCAAATGTAAATACTTATTATCATATCATTATATTATATTGTATTGATTAATATTATTAAAACAAAACACACAAAACACACAAGTAATGGTAATACATTATTGCATTGAAGATAAAAGGAAAAAACAAACGCGGTAGACAAACGGGTGGATAAACGCCCGCAAATGCGTGCAAAAACGCGGAAAAAGCGCATAAATACACACAAGTTGTAGCGAAAGACGAAGAAGAAGAAGAAGCAGACCGACGTACAGCGTACAGTAATGGAAGTATAACATTATATTGTCTTCTCTTATGAATTTCTATACAATAAA] [+] EMBL BX468531 [GCAGATTCCNGCACGAGGCGCACATGCTGTTTTTTTTNCTTTTTTTTTCAATGCAAATGTAAATACTTATTATCATATCATTATATTATATTGTATTGATTAATATTATTAAAACAAAACACACAAAACACACAAGTAATGGTAATACATTATTGCATTGAAGATAAAAGGAAAAAACAAACGCGGTAGACAAACGGGTGGATAAACGCCCGCAAATGCGTGCAAAAACGCGGAAAAAGCGCATAAATACACACAAGTTGTAGCGAAAGACGAAGAAGAAGAAGAAGCAGACCGACGTACAGCGTACAGTAATGGAAGTATAACATTATATTGTCTTCTCTTATGAATTTCTATACAATAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8221#0 GAATTTAGCGAAAGCAAACGGAACCGATCAGCAAAATCGGTTGAATGTTTACGCATTTAG 60 consensus_8221#1 ------------------------------------------------------------ consensus_8221#0 TAAGAGATACACAGATACAGAGATAAATACACATTTTAACATGTTTGCGGGGATGAATAC 120 consensus_8221#1 ------------------------------------------------------------ consensus_8221#0 GTAGCTCGTAAGCAGTGTACATTTCAGAACCGTACGTAAGCCGATAGAGATCCTGGGTTT 180 consensus_8221#1 ------------------------------------------------------------ consensus_8221#0 GTCCAGGCAATGCTCCTGGAGGAACTGATTTTAGTTTTTACCTTATTGTGTATCCCCAAC 240 consensus_8221#1 ------------------------------------------------------------ consensus_8221#0 CGTGTATTGGTGGCGTTTATTGTTAAACGAAATAAGCGCACAGATACACATCCTTGCTTT 300 consensus_8221#1 ------------------------------------------------------------ consensus_8221#0 TCTTGCATACTTAAAGGACGTTCGTGTGAAGCAACTGTTTAACAAATTGTTTCGAAACGC 360 consensus_8221#1 ------------------------------------------------------------ consensus_8221#0 CGGAATGCAGAAAGCAAGCGAGCGTTAAGAAAAATGGCGAATGGAAGGCATACAAGAATA 420 consensus_8221#1 ------------------------------------------------------------ consensus_8221#0 GCTAGCAAAAGGTTCAACTTTTTTTTAATACATAAGTAAATCGAAACAAATTTAAAGTAA 480 consensus_8221#1 ------------------------------------------------------------ consensus_8221#0 AACACACAAGTAATGATAAAATGGAATGCAAAAAAAATGAAAAAGAAAGAGACGAAACAT 540 consensus_8221#1 ------------------------------------------------------------ consensus_8221#0 AAAAGAAAAGCAAATTAAGAATACGTAAAAGTGAGCAGGTGAAAGTAGTTGAAGAGGACG 600 consensus_8221#1 ------------------------------------------------------------ consensus_8221#0 AGAAAAAAGGGTAACGAAATGCAATATTATGAGCGAACGGGAAAACCCATTGGAAGGAAA 660 consensus_8221#1 ------------------------------------------------------------ consensus_8221#0 CAATAATTTTATGCAAACAACAAAACAGCAAACAACAAAATGTGAAAAGCTGATCAAAAC 720 consensus_8221#1 ------------------------------------------------------------ consensus_8221#0 AGCACAAAAACAAATGCCCCCCTCATTGTAGTATGTAAAGTAGAAAAGCAAGCACATTTT 780 consensus_8221#1 ------------------------------------------------------------ consensus_8221#0 GTTAACTTATTGTCCGTAAGTCTTCTATTGATTAGTTCTTAGGGTGAACAAAGCAGAATC 840 consensus_8221#1 ------------------------------------------------------------ consensus_8221#0 TTTTGCACAACAACAACGACGACAACAAGTCCCTTCCAATAAGACAGCCCCTTCCCGGCT 900 consensus_8221#1 ------------------------------------------------------------ consensus_8221#0 TTGCAGGACTCGCGACGAAAGCAGGGAGCAAGGACGACAGGTTGTTGTTTTCGTTTTAAT 960 consensus_8221#1 ------------------------------------------------------------ consensus_8221#0 CGGTTAGGTTTCGTTTCGTTTCCGGTTGAATTTTTGTTGGGTAGGGGGTACTTTAACCGT 1020 consensus_8221#1 ------------------------------------------------------------ consensus_8221#0 TTTGGGGCGCGATCGATCTGCTGCATGTGACGGATCGTGTACATAAGAACGTTGGCGGTG 1080 consensus_8221#1 ------------------------------------------------------------ consensus_8221#0 AGTTTTGGTTTGTGTTTCAAATCAGCGCATATACACACAGCGATAAGGTGATCGTGGTGT 1140 consensus_8221#1 ------------------------------------------------------------ consensus_8221#0 TTGTTTCACAAAATTAACCAGATCGAGTATTTAGAAACGTCTCAAGCCAACCAGCAAATC 1200 consensus_8221#1 ------------------------------------------------------------ consensus_8221#0 ATAAAGATTCCTTTATGGAACACAAAAAGGGAAAATAACACAAAAAACACGAAAATTGTG 1260 consensus_8221#1 ------------------------------------------------------------ consensus_8221#0 CAGTAACATTGTTTACAGTAATTTAAACTTGCCCAAGGTATAGTCAAGAGTCGGAAGCAA 1320 consensus_8221#1 ------------------------------------------------------------ consensus_8221#0 ATGAAGGATAAAACTAATGTATTATTAAGTACGCTTAACCAGCGTGTTTCGAGGGTAGCG 1380 consensus_8221#1 ------------------------------------------------------------ consensus_8221#0 TAGTAATTTATCGAGATTCATTCGGCTTCAGGAAGGGAAAATAAATGAAACAAAAGCCGC 1440 consensus_8221#1 ------------------------------------------------------------ consensus_8221#0 TGGAATGTAGGAATGCAAAACACTTTTCGTTTCGTAATTCAGTCGAGTCGGTTAGGGTTA 1500 consensus_8221#1 ------------------------------------------------------------ consensus_8221#0 GTTGCTGTTCAGCTGAAGAAGTTGAAACTCCGATTCCACGGTACAACACACAACACGCAC 1560 consensus_8221#1 ------------------------------------------------------------ consensus_8221#0 ATCCACATCAACAGCACACACACATGCACAGACAACTCAAGCGACAGCAGCAAACAAAAA 1620 consensus_8221#1 ------------------------------------------------------------ consensus_8221#0 AAGAAACAAAGCTACAGCAAACAAGCAAACATAAATAAAAGCGAAACAATAAACAAATGT 1680 consensus_8221#1 ----------------------------------------------------GCAGATTC 8 ** ** consensus_8221#0 CTAGGGAAGAGAACGAGATGAGGGAACACGGGAAGGCAAACAAGGTAATGCAAATTGTAA 1740 consensus_8221#1 CN--GCACGAGGCGCACATGCTGTTTTTTTTNC---TTTTTTTTTCAATGCAAAT-GTAA 62 * * * *** * *** * ********* **** consensus_8221#0 ATACTTATTATCATATCATTATATTATATTGTATTGATTAATATTATTAAAACAAAACAC 1800 consensus_8221#1 ATACTTATTATCATATCATTATATTATATTGTATTGATTAATATTATTAAAACAAAACAC 122 ************************************************************ consensus_8221#0 ACAAAACACACAAGTAATGGTAATACATTATTGCATTGAAGATAAAAGGAAAAAACAAAC 1860 consensus_8221#1 ACAAAACACACAAGTAATGGTAATACATTATTGCATTGAAGATAAAAGGAAAAAACAAAC 182 ************************************************************ consensus_8221#0 GCGGTAGACAAACGGGTGGATAA-CGCCCGCAAATGCGTGCAAAAACGCGGAAAAAGCGC 1919 consensus_8221#1 GCGGTAGACAAACGGGTGGATAAACGCCCGCAAATGCGTGCAAAAACGCGGAAAAAGCGC 242 *********************** ************************************ consensus_8221#0 ATAAATACACACAAGTTGTAGCGAAAGACGAAGAAGAAGAAGAAGCAGACCGACGTACAG 1979 consensus_8221#1 ATAAATACACACAAGTTGTAGCGAAAGACGAAGAAGAAGAAGAAGCAGACCGACGTACAG 302 ************************************************************ consensus_8221#0 CGTACAGTAATGGAAGTATAA-ATTATATTGTCTTCT-TTATGAATTTCTATCCAATAAA 2037 consensus_8221#1 CGTACAGTAATGGAAGTATAACATTATATTGTCTTCTCTTATGAATTTCTATACAATAAA 362 ********************* *************** ************** ******* consensus_8221#0 AGGAAAAATAAAATATTATCTGTAATGAATA 2068 consensus_8221#1 ------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||